jgi.p|Nanoce1779_2|531373, mRNA_7285 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531373
Unique NamemRNA_7285
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length774
Alignment locationscaffold_19:125396..126169 -

Link to JBrowse

Properties
Property NameValue
TranscriptId531459
TrackFilteredModels2
ProteinId531373
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:125396..126169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531373gene_7285Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7285CDS_7285Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531373mRNA_7285-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7285 ID=mRNA_7285|Name=jgi.p|Nanoce1779_2|531373|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
ATGTCCACCACTATCAACGACGAGAGCCACCCCGCCTCAACCACTGAAAA
TAATTGCAGCAGCAACAGCACTAGCAGCAGCCTCGCCACCACCCGTCGTA
CGGGTATCATCCGCATCCCCGACGAAGGCGAGAGCTCCGGGGCGCCCTTC
CTCCCCATTTCCTCCTTTCTCATTCCTCCCCAATATCAAGACGCAGTCTC
CCACGTCCTGATCCCTCATGGCCTCATCCAGGATCGAATTCACAAGCTCG
CTTTTGACATCAACCAAGAGTACGCCGATAAGACTCTTCATCTCTTATGT
GTGCTTAAGGGCGGTTCGTCTTTTTTCTGGGAGTTGCAGAGTGCTCTTAT
CAACCTGTCGTCGCACCGACGGACGAACACCGCCAAGTTCCAATTTTCTT
TCGACTTTGTCCGAGTGAAGAGCTACGAAGGGACGGAGAGCACGGGGACA
GTGCAAATTACTGGGACGGATATGAAGAATTTGAAGGGGAGGCATTTGCT
TCTGGTGGAGGATTTGATTGACTCGGGGTTGACCATGTCACAATTGGTGC
CTCACATCACCAAGAATGCTGAACCGGAGAGCATACGCGTGGCAGCGTTG
ATGGAGAAGAGGACGCATCGCTCCTGTGGATTTAAGGCGGACTATGTGGC
GTTTGACATTCCCGATTTGTTCGTGGTGGGTTACTCATTGGATTATAATG
AGGCCTTCCGGGACATGTTGCATATCTGTGTGATTAATGAGCATGGGATT
GAGAAATTCAAGAGCAACCCTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|531373

>mRNA_7285-protein ID=mRNA_7285-protein|Name=jgi.p|Nanoce1779_2|531373|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MSTTINDESHPASTTENNCSSNSTSSSLATTRRTGIIRIPDEGESSGAPF
LPISSFLIPPQYQDAVSHVLIPHGLIQDRIHKLAFDINQEYADKTLHLLC
VLKGGSSFFWELQSALINLSSHRRTNTAKFQFSFDFVRVKSYEGTESTGT
VQITGTDMKNLKGRHLLLVEDLIDSGLTMSQLVPHITKNAEPESIRVAAL
MEKRTHRSCGFKADYVAFDIPDLFVVGYSLDYNEAFRDMLHICVINEHGI
EKFKSNP*
back to top

mRNA from alignment at scaffold_19:125396..126169-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7285 ID=mRNA_7285|Name=jgi.p|Nanoce1779_2|531373|organism=Nannochloropsis oceanica|type=mRNA|length=774bp|location=Sequence derived from alignment at scaffold_19:125396..126169- (Nannochloropsis oceanica)
ATGTCCACCACTATCAACGACGAGAGCCACCCCGCCTCAACCACTGAAAA
TAATTGCAGCAGCAACAGCACTAGCAGCAGCCTCGCCACCACCCGTCGTA
CGGGTATCATCCGCATCCCCGACGAAGGCGAGAGCTCCGGGGCGCCCTTC
CTCCCCATTTCCTCCTTTCTCATTCCTCCCCAATATCAAGACGCAGTCTC
CCACGTCCTGATCCCTCATGGCCTCATCCAGGATCGAATTCACAAGCTCG
CTTTTGACATCAACCAAGAGTACGCCGATAAGACTCTTCATCTCTTATGT
GTGCTTAAGGGCGGTTCGTCTTTTTTCTGGGAGTTGCAGAGTGCTCTTAT
CAACCTGTCGTCGCACCGACGGACGAACACCGCCAAGTTCCAATTTTCTT
TCGACTTTGTCCGAGTGAAGAGCTACGAAGGGACGGAGAGCACGGGGACA
GTGCAAATTACTGGGACGGATATGAAGAATTTGAAGGGGAGGCATTTGCT
TCTGGTGGAGGATTTGATTGACTCGGGGTTGACCATGTCACAATTGGTGC
CTCACATCACCAAGAATGCTGAACCGGAGAGCATACGCGTGGCAGCGTTG
ATGGAGAAGAGGACGCATCGCTCCTGTGGATTTAAGGCGGACTATGTGGC
GTTTGACATTCCCGATTTGTTCGTGGTGGGTTACTCATTGGATTATAATG
AGGCCTTCCGGGACATGTTGCATATCTGTGTGATTAATGAGCATGGGATT
GAGAAATTCAAGAGCAACCCTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_19:125396..126169-

>mRNA_7285 ID=mRNA_7285|Name=jgi.p|Nanoce1779_2|531373|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_19:125396..126169- (Nannochloropsis oceanica)
ATGTCCACCACTATCAACGACGAGAGCCACCCCGCCTCAACCACTGAAAA
TAATTGCAGCAGCAACAGCACTAGCAGCAGCCTCGCCACCACCCGTCGTA
CGGGTATCATCCGCATCCCCGACGAAGGCGAGAGCTCCGGGGCGCCCTTC
CTCCCCATTTCCTCCTTTCTCATTCCTCCCCAATATCAAGACGCAGTCTC
CCACGTCCTGATCCCTCATGGCCTCATCCAGGATCGAATTCACAAGCTCG
CTTTTGACATCAACCAAGAGTACGCCGATAAGACTCTTCATCTCTTATGT
GTGCTTAAGGGCGGTTCGTCTTTTTTCTGGGAGTTGCAGAGTGCTCTTAT
CAACCTGTCGTCGCACCGACGGACGAACACCGCCAAGTTCCAATTTTCTT
TCGACTTTGTCCGAGTGAAGAGCTACGAAGGGACGGAGAGCACGGGGACA
GTGCAAATTACTGGGACGGATATGAAGAATTTGAAGGGGAGGCATTTGCT
TCTGGTGGAGGATTTGATTGACTCGGGGTTGACCATGTCACAATTGGTGC
CTCACATCACCAAGAATGCTGAACCGGAGAGCATACGCGTGGCAGCGTTG
ATGGAGAAGAGGACGCATCGCTCCTGTGGATTTAAGGCGGACTATGTGGC
GTTTGACATTCCCGATTTGTTCGTGGTGGGTTACTCATTGGATTATAATG
AGGCCTTCCGGGACATGTTGCATATCTGTGTGATTAATGAGCATGGGATT
GAGAAATTCAAGAGCAACCCTTGA
back to top
Synonyms
Publications