jgi.p|Nanoce1779_2|600281, mRNA_7861 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600281
Unique NamemRNA_7861
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length943
Alignment locationscaffold_21:530888..532753 +

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Properties
Property NameValue
TranscriptId600367
TrackFilteredModels2
ProteinId600281
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:530888..532753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600281gene_7861Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600281mRNA_7861-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7861CDS_7861Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
CTGATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGC
CGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGC
CTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCT
ACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCT
CATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAA
AGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGG
ATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGG
AATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACGGCA
GAGTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGG
CAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCT
CAGGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGG
CGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATT
CAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAAC
GAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGA
GGAAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGC
ATGTATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAA
GAGAACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTT
CTTTCCACTTCCCTTAACTGCCAGCTGGAGTCAGAAACGTACGCCAAAAA
CGCCTACGGGGCGCCTCGCACTGGTGCTGCCATTCCTACTTCT
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protein sequence of jgi.p|Nanoce1779_2|600281

>mRNA_7861-protein ID=mRNA_7861-protein|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MFDDGSRVKAQCILAADGVHSVLRQKFVGDGKPREHGRLIYRSVIPYPAT
DREEMMGKINTEPSKLIHWQPCGEKNTYWAVIKKGGASPPIRRDGNPTRM
KQWLLHEYADFPDILGMIEATPAEGILERPNGRVLLIGDAAHAMILSVGQ
GANTALEDAVYIASYLRDAYALFPKNKGKAVQAAFEAFQNVRVKHCTDIQ
VRRRKRERKRGRKRGTKGGRERREEGKEGNEERKGREGKNRAQRKGRKGM
YIYRLHHSLAISLSRKRTGTNVKYTAHQSSPSSFHFP*
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mRNA from alignment at scaffold_21:530888..532753+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_21:530888..532753+ (Nannochloropsis oceanica)
CTGATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGC CGATGGCGTGCACTCAGGTCGGGAGGGAGGGAGGGAGGGAGGAAGGGGGG GGGGGGGGGGGGGATTGCCGATAGTGAGGGAGGGATCTTCACCTTGTCCA TCTGCCATATCATCCTTCCCTCACTCCCTCCCTTCCTCCCTCCCTCCCAG TGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGC CTCATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGAT GATGGGGAAGATTAACACTGAACCGAGGTAGGGAGGGAGGGAGGGAGGGA GGGATTGTACGATGACGAGAGGACAAAAGGTGACGACCACCTGTGTCCCC TCCCCTCCTCCTTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTC CCTCCCTCCCTGGGTTCAGTGTTAATCTTCCCTTCCTCCTTTCCTCCCTC CCTCCTTCAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACG TATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGA CGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACT TTCCCGACATTCTGGGAATGATTGAAGGTAGGTGTAGGCATGCCTTCCCT CCCTCCCTCCCTCGCACCCTCTTACCTTCCTGTGGCCTCGAAGTCGGCAA GTGGTGCGAGGAGACTACCTATACTCCCTCCCATCCATGTCCCCTCCCTC CCTCCCTCCCTCCCTCCCACCTTTCGCAGCGACGCCCGCAGAGGGCATCT TGGAGCGTCCAAGTGATAGACCGCGCGCCCATCACTCAGTGGTCATACCT AGACGGCAGAGTCCTGCTGATTGGCGATGCCGTGAGTCCCTCCCTCCCTC CCTCCCTCCCTCCCTCCCTCCCTCCCCATCACGGACCATCGAGGACGCTT CCTACTCTTTCTTCACCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCG TCCTCCTTCAGGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAAC ACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGTTGGCACG GAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGAGGGGGTCGTCTAG GTGGCCTCATACCTCAGGTTGATGCCGAGGGAGGGAGGGAGGAAGGGAGG GAGGGGGGGAAGAGGGGGAAGAGAGGGCGGGAAAGACAGAAAGGCAGCGT CGATTTTCGCACATTTATCCCATCCATTTGCACGTCACGTTCCACGTGCC ACAACATGAGGTCGTCGTCTCTCAAGCCTACACTCCCTCCGTCCCTCCCT CCCTCCCTCCCTCCATCTTTCCTCAGGGACGCCTACGCCCTTTTTCCCAA GAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGC GGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAAGG AAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAGGA AGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAGAG CACAGAGGAAGGGAAGGAAGGGCATGTATATATACAGGCTTCACCACTCA TTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTACAC CGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAACTGCCAGCTG GAGTCAGAAACGTACGCCAAAAACGCCTACGGGGCGCCTCGCACTGGTGC TGCCATTCCTACTTCT
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Coding sequence (CDS) from alignment at scaffold_21:530888..532753+

>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=CDS|length=6048bp|location=Sequence derived from alignment at scaffold_21:530888..532753+ (Nannochloropsis oceanica)
ATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGA
TGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTA
GAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCTACG
GATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCTCAT
CCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAAAGA
AGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGGATG
AAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGGAAT
GATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACGGCAGAG
TCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAA
GGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAG
GGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGG
CGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAG
GTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAA
GGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGA
AGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATG
TATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAG
AACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTT
TCCACTTCCCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGC
ATCTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGG
CGACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTC
CTTACCCCGCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAA
CCGAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTG
GGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTA
ATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCC
GACATTCTGGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCG
TCCAAACGGCAGAGTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCC
TCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATC
GCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAA
AGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATT
GCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGG
AAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGG
GAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGG
GAAGGAAGGGCATGTATATATACAGGCTTCACCACTCATTGGCCATCTCC
CTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTACACCGCTCATCAGTC
ATCTCCCTCTTCTTTCCACTTCCCTTAAATGTTTGATGACGGCTCGAGGG
TGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGG
CAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTA
CCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGATGATGGGGA
AGATTAACACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAG
AAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCAT
TCGTCGCGACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGT
ACGCTGACTTTCCCGACATTCTGGGAATGATTGAAGCGACGCCCGCAGAG
GGCATCTTGGAGCGTCCAAACGGCAGAGTCCTGCTGATTGGCGATGCCGC
CCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGG
ACGCAGTGTACATCGCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCC
AAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGT
GCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAA
GGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAG
GAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAG
AGCACAGAGGAAGGGAAGGAAGGGCATGTATATATACAGGCTTCACCACT
CATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTAC
ACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAAATGTTTGA
TGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGC
ACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCAC
GGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGA
GGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCTCATCCACTGGC
AGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGT
GCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGGATGAAGCAATG
GCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGGAATGATTGAAG
CGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACGGCAGAGTCCTGCTG
ATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAA
CACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACGCCT
ACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAG
GCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAG
GAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAA
GGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGG
GAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATATATA
CAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAA
CGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTC
CCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGC
AGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGA
AGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCC
GCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAA
GCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGA
TAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACC
CGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCT
GGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACG
GCAGAGTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTG
GGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATA
CCTCAGGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCC
AGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGAC
ATTCAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGG
AACGAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAG
AGAGGAAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAG
GGCATGTATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAG
AAAGAGAACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCT
CTTCTTTCCACTTCCCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCC
CAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTT
TGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTG
TCATTCCTTACCCCGCTACGGATAGGGAGGAGATGATGGGGAAGATTAAC
ACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACAC
GTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCG
ACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGAC
TTTCCCGACATTCTGGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTT
GGAGCGTCCAAACGGCAGAGTCCTGCTGATTGGCGATGCCGCCCATGCCA
TGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTG
TACATCGCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCCAAGAATAA
AGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCA
AGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGA
GGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAA
GGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAGAGCACAGA
GGAAGGGAAGGAAGGGCATGTATATATACAGGCTTCACCACTCATTGGCC
ATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTACACCGCTCA
TCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAAATGTTTGATGACGGCT
CGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTG
CTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCT
CATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGATGA
TGGGGAAGATTAACACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGC
GGGGAGAAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCC
TCCCATTCGTCGCGACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGC
ACGAGTACGCTGACTTTCCCGACATTCTGGGAATGATTGAAGCGACGCCC
GCAGAGGGCATCTTGGAGCGTCCAAACGGCAGAGTCCTGCTGATTGGCGA
TGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCC
TGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACGCCTACGCCCTT
TTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCA
GAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGA
GAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGA
AGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAA
GAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATATATACAGGCTTC
ACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTA
AAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAA
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Synonyms
Publications