jgi.p|Nanoce1779_2|604552, mRNA_8934 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604552
Unique Name	mRNA_8934
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2415
Alignment location	scaffold_29:254752..257166 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604638
Track	FilteredModels2
ProteinId	604552

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:254752..257166 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604552	gene_8934	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604552	mRNA_8934-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8934	CDS_8934	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:254752..257166+
coding sequence from alignment at scaffold_29:254752..257166+

mRNA sequence

>mRNA_8934 ID=mRNA_8934|Name=jgi.p|Nanoce1779_2|604552|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp
ACAGGATGAGACCGTTGACCTTGACTGGGGCTGGGGCCTTGGCCGTGGTG
CTCCTCGCCCAGGCCAGCACCGCCTTTATCCCCAGGCACGCCGCCGTCCG
CAACCTCTTCGCTTCCCGGCCACAGCAGCAACAGCATGCCTCCCGCGTCG
TCCTTTCCATGGTTGAGGCCATCGAGATTGCCATGCCTGCCCTGTCCTCC
ACCATGACAGAAGGGAAAATCGTAGAGTGGACCGCAAAGGTCGGGGATAA
GATCAAAGCTGGGCAGACAATCATGGTGGTGGAGTCCGACAAGGCAGACA
TGGACGTAGAGGCCTTCGAGGAAGGCTTCCTGGCGAAGATTGTTTTCGGT
GATGGCGCCTCTGCCCCTGTAGGTGCCACCGTCGCGCTCCTTGCCAAAAC
CAAGGACGAAGTCGCAGCCGTCGCCGCCATGACCCCCGGTGCAGCTCCCA
GTGCTGCTGCGCCTGCTGCTCCCACTGCCCCCGCTCCTGCGGTCACAGCG
CCTGCGGGAGGTGCAGGGGGTTTGGGTGTGCCGACCAACGAGATCAGCAT
GCCTGCCCTGTCCTCCACCATGACCGAAGGGAAGATTGTGGAGTGGACCG
TGAAGGTGGGGGACAAGGTCAAGTCCGGGCAGACCATCATGGTTGTGGAG
TCCGACAAGGCAGACATGGATGTGGAGGCATTTGAGAGTGGGTACGTGGC
GGCCATCCTCGCCAAGGCCGGAGAGGCCACGCCTGTGGGAGCGCCTTGTG
CCCTCTTGGTCGACAACGAGGCTGACATCGAGACGGTCAAGGCAGCCCTC
GCCGGAGGTGCCAGCGTCGGGGCCGCTGCCCCTGTCGCTGCTACTGCTGC
TGCTGCGCCTGCTGCTGCTGCTGCTGTGCCTGCAGGGCCGGAAAAACCGG
CGTTTGACTTCTCAGAGGTGTCCATGCCGGCCCTGTCCTCGACCATGACA
AGTGGAAAGATCGTGGCGTGGACGGCCAAGGTGGGGGATAGTATCAAGAG
CGGCCAGACGGTTATGGTGGTTGAATCCGATAAGGCAGATATGGACGTGG
AGAGCTTTGAGGGAGGCTTCCTTGCGTCTATCTTGACCGGCGAAGGCCAG
ACCGCCAATGTGGGCGCGCCCGTCGCCCTCCTGGCAGCGAAGAAGGAGGA
CGTGCCCGCCCTCCAAGCATATGGCCAAGCCCTCAAGGCCTCCCTCTCCG
GTGCCCCCACACCTGTTGCTGCAGCGCCTGCTCCTGCCGCTGCTGCTCCT
GCTCCTGCTGCTGCTACTGCTGCTACCACGGTTGCGACTACTCCAGGCGA
GCGTGTGGTTGCCTCCGGGTATGCGAAGAAATTGGCGTCTGAAGCAGGTG
TGGATTTGACGGCTGTATCTGGTACAGGGTTGGGAGGCCGTGTGGTGAGT
GCCAACGTCATCGCTGCAGCTGGAGGGAAGGCCGCGCCCAAGCCCCTTGG
TTACCAGAGCCCGGCGGGAGCGGCGACACCGCTAGGGAGGAAGCTGGCGG
AGGAAGCGGGTTTGGACCTTAAGACGATGAAGGGGACGGGCGAATTCGGG
CGTGTCACGGCGGATGATGTTTTGATTGCCACTGGCAAGAAGAGCCCGAT
CAAGAAGAAGGCTGCTGCTGCGGCTGGGGGCAAGCCGGCCAAGGCACCCA
AGCCGGCGCCGGGACCTATGCCGACGGGCATTAAGCCGATGGACGGAATG
ATGAAGGCCGTGGCTAAGAATATGGAGAAGACCCTGGACGTTCCGATCTT
CCGGGTATCTCGTTTGATCACCACCGACAAGTTCGACAAACTGTACGCGG
AAGTGAAGGGGCAGGGCGTGAGTGTCTCGGCCTTGCTTGCCAAGGCGGTG
GCTATCACTTTGGCACGCTACCCGATTTTGAACGCTGCCTATGACCCTTC
TGGCGCGATCAAGTATAACGCGGACATTAACGTGGCTATGGCCGTTGCCT
TGGATGGGGGCCTCATCACCCCCACCTTGAAAAACGCCGACAAGATGGAC
TTGGTCTCCCTCGGGGCAAAATGGCGCGAACTCGTCAAGAAGGCGCAAGA
GAAACGGCTAACCCCCGACGAGTATACCACGGGTACCTTTACCATCTCCA
ATCTCGGAATGTACGGCGTGTCCGCCTTTGACGCTATCCTCCCTCCTGGC
CAAGGATCGATCTTGGCGATTGGAGGGTCGCTGCCCACGGTAGTGGTGAG
GAAGGACGGAAGTTTCGCGGTTCAAAAGCAGATGACTGTGACGATCACAT
GCGACCATCGTCATATCTACGGAGCGGATGCTGCCGAGTTCCTGCGGGAC
TTGGCTGAGTTGATGGAGGAGGATGTGGAGAGTTTGCTCGACTAGAGCGA
GGGAGGGAGGAAAGGCGCGATTGGGATAGGGCAATAGTTTTCGGTATATA
TATTCATGTCAGTGA

protein sequence of jgi.p|Nanoce1779_2|604552

>mRNA_8934-protein ID=mRNA_8934-protein|Name=jgi.p|Nanoce1779_2|604552|organism=Nannochloropsis oceanica|type=polypeptide|length=780bp
MRPLTLTGAGALAVVLLAQASTAFIPRHAAVRNLFASRPQQQQHASRVVL
SMVEAIEIAMPALSSTMTEGKIVEWTAKVGDKIKAGQTIMVVESDKADMD
VEAFEEGFLAKIVFGDGASAPVGATVALLAKTKDEVAAVAAMTPGAAPSA
AAPAAPTAPAPAVTAPAGGAGGLGVPTNEISMPALSSTMTEGKIVEWTVK
VGDKVKSGQTIMVVESDKADMDVEAFESGYVAAILAKAGEATPVGAPCAL
LVDNEADIETVKAALAGGASVGAAAPVAATAAAAPAAAAAVPAGPEKPAF
DFSEVSMPALSSTMTSGKIVAWTAKVGDSIKSGQTVMVVESDKADMDVES
FEGGFLASILTGEGQTANVGAPVALLAAKKEDVPALQAYGQALKASLSGA
PTPVAAAPAPAAAAPAPAAATAATTVATTPGERVVASGYAKKLASEAGVD
LTAVSGTGLGGRVVSANVIAAAGGKAAPKPLGYQSPAGAATPLGRKLAEE
AGLDLKTMKGTGEFGRVTADDVLIATGKKSPIKKKAAAAAGGKPAKAPKP
APGPMPTGIKPMDGMMKAVAKNMEKTLDVPIFRVSRLITTDKFDKLYAEV
KGQGVSVSALLAKAVAITLARYPILNAAYDPSGAIKYNADINVAMAVALD
GGLITPTLKNADKMDLVSLGAKWRELVKKAQEKRLTPDEYTTGTFTISNL
GMYGVSAFDAILPPGQGSILAIGGSLPTVVVRKDGSFAVQKQMTVTITCD
HRHIYGADAAEFLRDLAELMEEDVESLLD*

mRNA from alignment at scaffold_29:254752..257166+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8934 ID=mRNA_8934|Name=jgi.p|Nanoce1779_2|604552|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp|location=Sequence derived from alignment at scaffold_29:254752..257166+ (Nannochloropsis oceanica)
ACAGGATGAGACCGTTGACCTTGACTGGGGCTGGGGCCTTGGCCGTGGTG
CTCCTCGCCCAGGCCAGCACCGCCTTTATCCCCAGGCACGCCGCCGTCCG
CAACCTCTTCGCTTCCCGGCCACAGCAGCAACAGCATGCCTCCCGCGTCG
TCCTTTCCATGGTTGAGGCCATCGAGATTGCCATGCCTGCCCTGTCCTCC
ACCATGACAGAAGGGAAAATCGTAGAGTGGACCGCAAAGGTCGGGGATAA
GATCAAAGCTGGGCAGACAATCATGGTGGTGGAGTCCGACAAGGCAGACA
TGGACGTAGAGGCCTTCGAGGAAGGCTTCCTGGCGAAGATTGTTTTCGGT
GATGGCGCCTCTGCCCCTGTAGGTGCCACCGTCGCGCTCCTTGCCAAAAC
CAAGGACGAAGTCGCAGCCGTCGCCGCCATGACCCCCGGTGCAGCTCCCA
GTGCTGCTGCGCCTGCTGCTCCCACTGCCCCCGCTCCTGCGGTCACAGCG
CCTGCGGGAGGTGCAGGGGGTTTGGGTGTGCCGACCAACGAGATCAGCAT
GCCTGCCCTGTCCTCCACCATGACCGAAGGGAAGATTGTGGAGTGGACCG
TGAAGGTGGGGGACAAGGTCAAGTCCGGGCAGACCATCATGGTTGTGGAG
TCCGACAAGGCAGACATGGATGTGGAGGCATTTGAGAGTGGGTACGTGGC
GGCCATCCTCGCCAAGGCCGGAGAGGCCACGCCTGTGGGAGCGCCTTGTG
CCCTCTTGGTCGACAACGAGGCTGACATCGAGACGGTCAAGGCAGCCCTC
GCCGGAGGTGCCAGCGTCGGGGCCGCTGCCCCTGTCGCTGCTACTGCTGC
TGCTGCGCCTGCTGCTGCTGCTGCTGTGCCTGCAGGGCCGGAAAAACCGG
CGTTTGACTTCTCAGAGGTGTCCATGCCGGCCCTGTCCTCGACCATGACA
AGTGGAAAGATCGTGGCGTGGACGGCCAAGGTGGGGGATAGTATCAAGAG
CGGCCAGACGGTTATGGTGGTTGAATCCGATAAGGCAGATATGGACGTGG
AGAGCTTTGAGGGAGGCTTCCTTGCGTCTATCTTGACCGGCGAAGGCCAG
ACCGCCAATGTGGGCGCGCCCGTCGCCCTCCTGGCAGCGAAGAAGGAGGA
CGTGCCCGCCCTCCAAGCATATGGCCAAGCCCTCAAGGCCTCCCTCTCCG
GTGCCCCCACACCTGTTGCTGCAGCGCCTGCTCCTGCCGCTGCTGCTCCT
GCTCCTGCTGCTGCTACTGCTGCTACCACGGTTGCGACTACTCCAGGCGA
GCGTGTGGTTGCCTCCGGGTATGCGAAGAAATTGGCGTCTGAAGCAGGTG
TGGATTTGACGGCTGTATCTGGTACAGGGTTGGGAGGCCGTGTGGTGAGT
GCCAACGTCATCGCTGCAGCTGGAGGGAAGGCCGCGCCCAAGCCCCTTGG
TTACCAGAGCCCGGCGGGAGCGGCGACACCGCTAGGGAGGAAGCTGGCGG
AGGAAGCGGGTTTGGACCTTAAGACGATGAAGGGGACGGGCGAATTCGGG
CGTGTCACGGCGGATGATGTTTTGATTGCCACTGGCAAGAAGAGCCCGAT
CAAGAAGAAGGCTGCTGCTGCGGCTGGGGGCAAGCCGGCCAAGGCACCCA
AGCCGGCGCCGGGACCTATGCCGACGGGCATTAAGCCGATGGACGGAATG
ATGAAGGCCGTGGCTAAGAATATGGAGAAGACCCTGGACGTTCCGATCTT
CCGGGTATCTCGTTTGATCACCACCGACAAGTTCGACAAACTGTACGCGG
AAGTGAAGGGGCAGGGCGTGAGTGTCTCGGCCTTGCTTGCCAAGGCGGTG
GCTATCACTTTGGCACGCTACCCGATTTTGAACGCTGCCTATGACCCTTC
TGGCGCGATCAAGTATAACGCGGACATTAACGTGGCTATGGCCGTTGCCT
TGGATGGGGGCCTCATCACCCCCACCTTGAAAAACGCCGACAAGATGGAC
TTGGTCTCCCTCGGGGCAAAATGGCGCGAACTCGTCAAGAAGGCGCAAGA
GAAACGGCTAACCCCCGACGAGTATACCACGGGTACCTTTACCATCTCCA
ATCTCGGAATGTACGGCGTGTCCGCCTTTGACGCTATCCTCCCTCCTGGC
CAAGGATCGATCTTGGCGATTGGAGGGTCGCTGCCCACGGTAGTGGTGAG
GAAGGACGGAAGTTTCGCGGTTCAAAAGCAGATGACTGTGACGATCACAT
GCGACCATCGTCATATCTACGGAGCGGATGCTGCCGAGTTCCTGCGGGAC
TTGGCTGAGTTGATGGAGGAGGATGTGGAGAGTTTGCTCGACTAGAGCGA
GGGAGGGAGGAAAGGCGCGATTGGGATAGGGCAATAGTTTTCGGTATATA
TATTCATGTCAGTGA

Coding sequence (CDS) from alignment at scaffold_29:254752..257166+

>mRNA_8934 ID=mRNA_8934|Name=jgi.p|Nanoce1779_2|604552|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_29:254752..257166+ (Nannochloropsis oceanica)
ATGAGACCGTTGACCTTGACTGGGGCTGGGGCCTTGGCCGTGGTGCTCCT
CGCCCAGGCCAGCACCGCCTTTATCCCCAGGCACGCCGCCGTCCGCAACC
TCTTCGCTTCCCGGCCACAGCAGCAACAGCATGCCTCCCGCGTCGTCCTT
TCCATGGTTGAGGCCATCGAGATTGCCATGCCTGCCCTGTCCTCCACCAT
GACAGAAGGGAAAATCGTAGAGTGGACCGCAAAGGTCGGGGATAAGATCA
AAGCTGGGCAGACAATCATGGTGGTGGAGTCCGACAAGGCAGACATGGAC
GTAGAGGCCTTCGAGGAAGGCTTCCTGGCGAAGATTGTTTTCGGTGATGG
CGCCTCTGCCCCTGTAGGTGCCACCGTCGCGCTCCTTGCCAAAACCAAGG
ACGAAGTCGCAGCCGTCGCCGCCATGACCCCCGGTGCAGCTCCCAGTGCT
GCTGCGCCTGCTGCTCCCACTGCCCCCGCTCCTGCGGTCACAGCGCCTGC
GGGAGGTGCAGGGGGTTTGGGTGTGCCGACCAACGAGATCAGCATGCCTG
CCCTGTCCTCCACCATGACCGAAGGGAAGATTGTGGAGTGGACCGTGAAG
GTGGGGGACAAGGTCAAGTCCGGGCAGACCATCATGGTTGTGGAGTCCGA
CAAGGCAGACATGGATGTGGAGGCATTTGAGAGTGGGTACGTGGCGGCCA
TCCTCGCCAAGGCCGGAGAGGCCACGCCTGTGGGAGCGCCTTGTGCCCTC
TTGGTCGACAACGAGGCTGACATCGAGACGGTCAAGGCAGCCCTCGCCGG
AGGTGCCAGCGTCGGGGCCGCTGCCCCTGTCGCTGCTACTGCTGCTGCTG
CGCCTGCTGCTGCTGCTGCTGTGCCTGCAGGGCCGGAAAAACCGGCGTTT
GACTTCTCAGAGGTGTCCATGCCGGCCCTGTCCTCGACCATGACAAGTGG
AAAGATCGTGGCGTGGACGGCCAAGGTGGGGGATAGTATCAAGAGCGGCC
AGACGGTTATGGTGGTTGAATCCGATAAGGCAGATATGGACGTGGAGAGC
TTTGAGGGAGGCTTCCTTGCGTCTATCTTGACCGGCGAAGGCCAGACCGC
CAATGTGGGCGCGCCCGTCGCCCTCCTGGCAGCGAAGAAGGAGGACGTGC
CCGCCCTCCAAGCATATGGCCAAGCCCTCAAGGCCTCCCTCTCCGGTGCC
CCCACACCTGTTGCTGCAGCGCCTGCTCCTGCCGCTGCTGCTCCTGCTCC
TGCTGCTGCTACTGCTGCTACCACGGTTGCGACTACTCCAGGCGAGCGTG
TGGTTGCCTCCGGGTATGCGAAGAAATTGGCGTCTGAAGCAGGTGTGGAT
TTGACGGCTGTATCTGGTACAGGGTTGGGAGGCCGTGTGGTGAGTGCCAA
CGTCATCGCTGCAGCTGGAGGGAAGGCCGCGCCCAAGCCCCTTGGTTACC
AGAGCCCGGCGGGAGCGGCGACACCGCTAGGGAGGAAGCTGGCGGAGGAA
GCGGGTTTGGACCTTAAGACGATGAAGGGGACGGGCGAATTCGGGCGTGT
CACGGCGGATGATGTTTTGATTGCCACTGGCAAGAAGAGCCCGATCAAGA
AGAAGGCTGCTGCTGCGGCTGGGGGCAAGCCGGCCAAGGCACCCAAGCCG
GCGCCGGGACCTATGCCGACGGGCATTAAGCCGATGGACGGAATGATGAA
GGCCGTGGCTAAGAATATGGAGAAGACCCTGGACGTTCCGATCTTCCGGG
TATCTCGTTTGATCACCACCGACAAGTTCGACAAACTGTACGCGGAAGTG
AAGGGGCAGGGCGTGAGTGTCTCGGCCTTGCTTGCCAAGGCGGTGGCTAT
CACTTTGGCACGCTACCCGATTTTGAACGCTGCCTATGACCCTTCTGGCG
CGATCAAGTATAACGCGGACATTAACGTGGCTATGGCCGTTGCCTTGGAT
GGGGGCCTCATCACCCCCACCTTGAAAAACGCCGACAAGATGGACTTGGT
CTCCCTCGGGGCAAAATGGCGCGAACTCGTCAAGAAGGCGCAAGAGAAAC
GGCTAACCCCCGACGAGTATACCACGGGTACCTTTACCATCTCCAATCTC
GGAATGTACGGCGTGTCCGCCTTTGACGCTATCCTCCCTCCTGGCCAAGG
ATCGATCTTGGCGATTGGAGGGTCGCTGCCCACGGTAGTGGTGAGGAAGG
ACGGAAGTTTCGCGGTTCAAAAGCAGATGACTGTGACGATCACATGCGAC
CATCGTCATATCTACGGAGCGGATGCTGCCGAGTTCCTGCGGGACTTGGC
TGAGTTGATGGAGGAGGATGTGGAGAGTTTGCTCGACTAG

Synonyms

Publications