jgi.p|Nanoce1779_2|611223, mRNA_10370 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611223
Unique NamemRNA_10370
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_55:16976..17833 +

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Properties
Property NameValue
TranscriptId611309
TrackFilteredModels2
ProteinId611223
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:16976..17833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611223gene_10370Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611223mRNA_10370-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10370CDS_10370Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10370 ID=mRNA_10370|Name=jgi.p|Nanoce1779_2|611223|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
CAGGCGTGAGAAGGACCATGGCGTCTTCCCTCTCTGTTGTTGTCAAGAGG
GCAGGCGGCGCGGCCTTGGCCCGTCCTCTGTCCCACGAAGTCAGGAGGAA
TTTTACGCGTTCGGCGGCGGTACTAGGCGGTGGTGGCCATCACCCCGGCC
CTCCCCTGCAACCATTTAAGCGTACGGCCATGCCTGAGGGACCGCTATTT
GAGGAGCACGAGTTGATTTGGGACGATCGGGTGGCGGCGGAGATGTGTCT
GGATTTCGACGCGAGCTTTGTGCCCAAGGGAGAGGCTGTGCGATGGTGGC
TAGGCGGCTTCGGCTTCTTCTTCTCTCTGCTCGGCCTCGTCTCCCTCACG
GACCCAGGGGCAGCCAATCCGTGCGTGAACAAGACTGAGACGATGCCAGA
CCTTGGCCTCTCGTTCATCCAGATGGGAGGGAGTCCGGCGGCGGAGGAAG
AGGAGGCGGAGGAGGAGTAGACGGAGGGAGGAAGGAGAGGGAGGAGGGTG
TTTGTGTCTAGGTAGGGAGGGT
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protein sequence of jgi.p|Nanoce1779_2|611223

>mRNA_10370-protein ID=mRNA_10370-protein|Name=jgi.p|Nanoce1779_2|611223|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MASSLSVVVKRAGGAALARPLSHEVRRNFTRSAAVLGGGGHHPGPPLQPF
KRTAMPEGPLFEEHELIWDDRVAAEMCLDFDASFVPKGEAVRWWLGGFGF
FFSLLGLVSLTDPGAANPCVNKTETMPDLGLSFIQMGGSPAAEEEEAEEE
*
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mRNA from alignment at scaffold_55:16976..17833+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10370 ID=mRNA_10370|Name=jgi.p|Nanoce1779_2|611223|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at scaffold_55:16976..17833+ (Nannochloropsis oceanica)
CAGGCGTGAGAAGGACCATGGCGTCTTCCCTCTCTGTTGTTGTCAAGAGG
GCAGGCGGCGCGGCCTTGGCCCGTCCTCTGTCCCACGAAGTCAGGAGGAA
TTTTACGCGTTCGGCGGCGGTACTAGGTGGGTTGTGTGTGGAGTGGAAGG
CGGACAGGAAGAAAGGGAAGCAGGGGAGGCATGTACTGGGATGTAATTGT
ACTCAAGAGAAAGTTCGATAACGAGAAGGGGTGGACTTGAAAAGGGCAGG
TGGAGAATGAATCGACTGTCACGATCCGAACGTACACGACTCACCTCCCC
CTCTTTCCCCCCCCTTGCCCACAATCAGGCGGTGGTGGCCATCACCCCGG
CCCTCCCCTGCAACCATTTAAGCGTACGGCCATGCCTGAGGGACCGCTAT
TTGAGGAGCACGAGTTGATTTGGGACGATCGGGTGGCGGCGGAGATGTGT
CTGGATTTCGACGCGAGCTTTGTGCCCAAGGGAGAGGTGAGGGAGGGAGG
GGGAGGGAAGGGAAAAGCGAGAGCAAAGAGAGATAATTTGAGAAGGCTTT
TATCTCGTGTTGACCTTCTTGTAATGCTTAAACCTGCTCTCTTGTCCGTT
TCCCCTTGCATGACCGGTAGGCTGTGCGATGGTGGCTAGGCGGCTTCGGC
TTCTTCTTCTCTCTGCTCGGCCTCGTCTCCCTCACGGACCCAGGGGCAGC
CAATCCGTGCGTGAACAAGACTGAGACGATGCCAGACCTTGGCCTCTCGT
TCATCCAGATGGGAGGGAGTCCGGCGGCGGAGGAAGAGGAGGCGGAGGAG
GAGTAGACGGAGGGAGGAAGGAGAGGGAGGAGGGTGTTTGTGTCTAGGTA
GGGAGGGT
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Coding sequence (CDS) from alignment at scaffold_55:16976..17833+

>mRNA_10370 ID=mRNA_10370|Name=jgi.p|Nanoce1779_2|611223|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_55:16976..17833+ (Nannochloropsis oceanica)
ATGGCGTCTTCCCTCTCTGTTGTTGTCAAGAGGGCAGGCGGCGCGGCCTT
GGCCCGTCCTCTGTCCCACGAAGTCAGGAGGAATTTTACGCGTTCGGCGG
CGGTACTAGGCGGTGGTGGCCATCACCCCGGCCCTCCCCTGCAACCATTT
AAGCGTACGGCCATGCCTGAGGGACCGCTATTTGAGGAGCACGAGTTGAT
TTGGGACGATCGGGTGGCGGCGGAGATGTGTCTGGATTTCGACGCGAGCT
TTGTGCCCAAGGGAGAGGCTGTGCGATGGTGGCTAGGCGGCTTCGGCTTC
TTCTTCTCTCTGCTCGGCCTCGTCTCCCTCACGGACCCAGGGGCAGCCAA
TCCGTGCGTGAACAAGACTGAGACGATGCCAGACCTTGGCCTCTCGTTCA
TCCAGATGGGAGGGAGTCCGGCGGCGGAGGAAGAGGAGGCGGAGGAGGAG
TAGATGGCGTCTTCCCTCTCTGTTGTTGTCAAGAGGGCAGGCGGCGCGGC
CTTGGCCCGTCCTCTGTCCCACGAAGTCAGGAGGAATTTTACGCGTTCGG
CGGCGGTACTAGGCGGTGGTGGCCATCACCCCGGCCCTCCCCTGCAACCA
TTTAAGCGTACGGCCATGCCTGAGGGACCGCTATTTGAGGAGCACGAGTT
GATTTGGGACGATCGGGTGGCGGCGGAGATGTGTCTGGATTTCGACGCGA
GCTTTGTGCCCAAGGGAGAGGCTGTGCGATGGTGGCTAGGCGGCTTCGGC
TTCTTCTTCTCTCTGCTCGGCCTCGTCTCCCTCACGGACCCAGGGGCAGC
CAATCCGTGCGTGAACAAGACTGAGACGATGCCAGACCTTGGCCTCTCGT
TCATCCAGATGGGAGGGAGTCCGGCGGCGGAGGAAGAGGAGGCGGAGGAG
GAGTAGATGGCGTCTTCCCTCTCTGTTGTTGTCAAGAGGGCAGGCGGCGC
GGCCTTGGCCCGTCCTCTGTCCCACGAAGTCAGGAGGAATTTTACGCGTT
CGGCGGCGGTACTAGGCGGTGGTGGCCATCACCCCGGCCCTCCCCTGCAA
CCATTTAAGCGTACGGCCATGCCTGAGGGACCGCTATTTGAGGAGCACGA
GTTGATTTGGGACGATCGGGTGGCGGCGGAGATGTGTCTGGATTTCGACG
CGAGCTTTGTGCCCAAGGGAGAGGCTGTGCGATGGTGGCTAGGCGGCTTC
GGCTTCTTCTTCTCTCTGCTCGGCCTCGTCTCCCTCACGGACCCAGGGGC
AGCCAATCCGTGCGTGAACAAGACTGAGACGATGCCAGACCTTGGCCTCT
CGTTCATCCAGATGGGAGGGAGTCCGGCGGCGGAGGAAGAGGAGGCGGAG
GAGGAGTAG
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Synonyms
Publications