jgi.p|Nanoce1779_2|610462, mRNA_10220 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610462
Unique NamemRNA_10220
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length451
Alignment locationscaffold_50:44898..45348 -

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Properties
Property NameValue
TranscriptId610548
TrackFilteredModels2
ProteinId610462
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:44898..45348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610462gene_10220Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610462mRNA_10220-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10220CDS_10220Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10220 ID=mRNA_10220|Name=jgi.p|Nanoce1779_2|610462|organism=Nannochloropsis oceanica|type=mRNA|length=451bp
CAACAGGCACACCATGCAACCACCACCACGTCTCTTTGCTCTTTTGCTTA
TTCCCCTCCTCCTAGCTCTCTTTATCTCTCCCTGGGTCGTCATCGTCGAT
GCCTTTGTCTCCCTCCCGTCCTCCTCCGGCTCGCCCTCGTCCTCCTGCCT
GCCTCTCTACGCACGCCCCATCCTTTCCTCAGCCGAGCGCCTTACACTAA
ACGAACCCGTGCTGAGAGAAATCGCCACGAAATTAGACGAAGCTGGGCTA
GGCAAAACACACCTCGTGCAAGACAGAAGCCTTGGGCCTGGGTTACACGT
AAGTACGCAAAGGAAAAAAGGACGGGCAGGGGGGATAGTAGGGGAGGTTT
CCTGTCGCTCTGCGGTGGTAATTCTCAACCTCATCGATGAATCGCATAAA
TCTTTCTTTGCATCGTTTGGACATGTAGAATCAGCATTACCGCTTTGACA
C
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protein sequence of jgi.p|Nanoce1779_2|610462

>mRNA_10220-protein ID=mRNA_10220-protein|Name=jgi.p|Nanoce1779_2|610462|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MQPPPRLFALLLIPLLLALFISPWVVIVDAFVSLPSSSGSPSSSCLPLYA
RPILSSAERLTLNEPVLREIATKLDEAGLGKTHLVQDRSLGPGLHVSTQR
KKGRAGGIVGEVSCRSAVVILNLIDESHKSFFASFGHVESALPL*
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mRNA from alignment at scaffold_50:44898..45348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10220 ID=mRNA_10220|Name=jgi.p|Nanoce1779_2|610462|organism=Nannochloropsis oceanica|type=mRNA|length=451bp|location=Sequence derived from alignment at scaffold_50:44898..45348- (Nannochloropsis oceanica)
CAACAGGCACACCATGCAACCACCACCACGTCTCTTTGCTCTTTTGCTTA
TTCCCCTCCTCCTAGCTCTCTTTATCTCTCCCTGGGTCGTCATCGTCGAT
GCCTTTGTCTCCCTCCCGTCCTCCTCCGGCTCGCCCTCGTCCTCCTGCCT
GCCTCTCTACGCACGCCCCATCCTTTCCTCAGCCGAGCGCCTTACACTAA
ACGAACCCGTGCTGAGAGAAATCGCCACGAAATTAGACGAAGCTGGGCTA
GGCAAAACACACCTCGTGCAAGACAGAAGCCTTGGGCCTGGGTTACACGT
AAGTACGCAAAGGAAAAAAGGACGGGCAGGGGGGATAGTAGGGGAGGTTT
CCTGTCGCTCTGCGGTGGTAATTCTCAACCTCATCGATGAATCGCATAAA
TCTTTCTTTGCATCGTTTGGACATGTAGAATCAGCATTACCGCTTTGACA
C
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Coding sequence (CDS) from alignment at scaffold_50:44898..45348-

>mRNA_10220 ID=mRNA_10220|Name=jgi.p|Nanoce1779_2|610462|organism=Nannochloropsis oceanica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_50:44898..45348- (Nannochloropsis oceanica)
ATGCAACCACCACCACGTCTCTTTGCTCTTTTGCTTATTCCCCTCCTCCT
AGCTCTCTTTATCTCTCCCTGGGTCGTCATCGTCGATGCCTTTGTCTCCC
TCCCGTCCTCCTCCGGCTCGCCCTCGTCCTCCTGCCTGCCTCTCTACGCA
CGCCCCATCCTTTCCTCAGCCGAGCGCCTTACACTAAACGAACCCGTGCT
GAGAGAAATCGCCACGAAATTAGACGAAGCTGGGCTAGGCAAAACACACC
TCGTGCAAGACAGAAGCCTTGGGCCTGGGTTACACGTAAGTACGCAAAGG
AAAAAAGGACGGGCAGGGGGGATAGTAGGGGAGGTTTCCTGTCGCTCTGC
GGTGGTAATTCTCAACCTCATCGATGAATCGCATAAATCTTTCTTTGCAT
CGTTTGGACATGTAGAATCAGCATTACCGCTTTGA
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Synonyms
Publications