jgi.p|Nanoce1779_2|610497, mRNA_10228 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610497
Unique NamemRNA_10228
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length537
Alignment locationscaffold_50:70684..71220 -

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Properties
Property NameValue
TranscriptId610583
TrackFilteredModels2
ProteinId610497
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:70684..71220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610497gene_10228Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610497mRNA_10228-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10228CDS_10228Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10228 ID=mRNA_10228|Name=jgi.p|Nanoce1779_2|610497|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
GAAAGAGGGAGAAGAAAAAAATGAAGAATGGGAAGAGGAGGAGGGGGACA
GGAGGAGCGAGTAATTTCCTACTCGTTTCGCCTCTTTTTCAATGCTTCCA
TTCCTCGCTCTTTCTCCACGCCCCTTCATTCATCTCTCGCTTCTTTTCCT
CCTCCCTTGTCCTCTGAAATTTTCGTGTTGTTTGTTTCTCACTGTTTCCC
CAAAAAACATGCTCGTTAACCTCCTCTTCCCGTCCGGGTACACTTGCCTT
GTTATCACGATCACTTTCTTTGCCTCTCTATTAATCAAGTAACTGTGCTC
GTACAGTATTAACGTCACCCAGCACGTCACAGCCAGCAGCAGGAGGCATG
TGACAGCCTTGAGCGCGGCCCATCGCTCCTGTTGGCGCTACGCCGCGACG
ACGAACAACGGCATGCGCTGCTTCATCCGCCTTGACTATCACAAGCATAC
TCACATATTAGAAACCCTATCCCCAAAACGCATCCACACAGACGCCAAAC
ATTGTCCCCAAGCTCCCTCTAGAGCCATGCTACTCCT
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protein sequence of jgi.p|Nanoce1779_2|610497

>mRNA_10228-protein ID=mRNA_10228-protein|Name=jgi.p|Nanoce1779_2|610497|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MLPFLALSPRPFIHLSLLFLLPCPLKFSCCLFLTVSPKNMLVNLLFPSGY
TCLVITITFFASLLIK*
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mRNA from alignment at scaffold_50:70684..71220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10228 ID=mRNA_10228|Name=jgi.p|Nanoce1779_2|610497|organism=Nannochloropsis oceanica|type=mRNA|length=537bp|location=Sequence derived from alignment at scaffold_50:70684..71220- (Nannochloropsis oceanica)
GAAAGAGGGAGAAGAAAAAAATGAAGAATGGGAAGAGGAGGAGGGGGACA
GGAGGAGCGAGTAATTTCCTACTCGTTTCGCCTCTTTTTCAATGCTTCCA
TTCCTCGCTCTTTCTCCACGCCCCTTCATTCATCTCTCGCTTCTTTTCCT
CCTCCCTTGTCCTCTGAAATTTTCGTGTTGTTTGTTTCTCACTGTTTCCC
CAAAAAACATGCTCGTTAACCTCCTCTTCCCGTCCGGGTACACTTGCCTT
GTTATCACGATCACTTTCTTTGCCTCTCTATTAATCAAGTAACTGTGCTC
GTACAGTATTAACGTCACCCAGCACGTCACAGCCAGCAGCAGGAGGCATG
TGACAGCCTTGAGCGCGGCCCATCGCTCCTGTTGGCGCTACGCCGCGACG
ACGAACAACGGCATGCGCTGCTTCATCCGCCTTGACTATCACAAGCATAC
TCACATATTAGAAACCCTATCCCCAAAACGCATCCACACAGACGCCAAAC
ATTGTCCCCAAGCTCCCTCTAGAGCCATGCTACTCCT
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Coding sequence (CDS) from alignment at scaffold_50:70684..71220-

>mRNA_10228 ID=mRNA_10228|Name=jgi.p|Nanoce1779_2|610497|organism=Nannochloropsis oceanica|type=CDS|length=201bp|location=Sequence derived from alignment at scaffold_50:70684..71220- (Nannochloropsis oceanica)
ATGCTTCCATTCCTCGCTCTTTCTCCACGCCCCTTCATTCATCTCTCGCT
TCTTTTCCTCCTCCCTTGTCCTCTGAAATTTTCGTGTTGTTTGTTTCTCA
CTGTTTCCCCAAAAAACATGCTCGTTAACCTCCTCTTCCCGTCCGGGTAC
ACTTGCCTTGTTATCACGATCACTTTCTTTGCCTCTCTATTAATCAAGTA
A
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Synonyms
Publications