jgi.p|Nanoce1779_2|611307, mRNA_10390 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611307
Unique NamemRNA_10390
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length851
Alignment locationscaffold_55:76719..77651 +

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Properties
Property NameValue
TranscriptId611393
TrackFilteredModels2
ProteinId611307
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:76719..77651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611307gene_10390Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611307mRNA_10390-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10390CDS_10390Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10390 ID=mRNA_10390|Name=jgi.p|Nanoce1779_2|611307|organism=Nannochloropsis oceanica|type=mRNA|length=851bp
CAGCAGCCAAGCAGATCATACCAGCACAAGCGCTATGGTCAAAAGAGTGA
GAATACGAAAGGGAGGATGGCAGACCCCCTACTCGGCAGGCCCGGGTACT
GTCATCGCCCTCCTTCTCTTTTTTGGTGCGTCGGTCTCCATGCTGCCGCT
TCGGGGGGAAACTAACGCGGTGAATGACAAGCATCGATTCTTGCGGGCCA
ACCTGCCCTTTATCTCCTCGTCGTTTTCGACTTTGTCTACTCCTTCTCCA
GACTGGCATCACAAGACACTGTGGCCGCTTGATACACGGGACTATGTCAC
GCTTGCTCTTGCCACAATCGGTTTAATTCTTGCCGCGGGGGAAGGGATGG
GAGGCGGGGTCATATTGGTGCCGCTTTTTATCCTCGTCCTCGACTTGCCG
CTGAGACGTGCCATACCCCTATCGAACGTCACCATATTGGTAAGGAGGTC
TTTACAACGAGGGGAGGAGAGGGAGAGGAAAGGGGTAGGAAAAAAGAGAA
GATGGGGCGAACCTGCGATTGGTCGTGAAAATACATGTTCTCATTGAGTT
ATTCGTCACTCGAACACCTCATGTTTTGCCACCAGGGAGGTGCTCTTGCC
AACACGTGGCACTCCCTCTCTCAGAGTCATCCGCAAGCAAACCGACAACT
TGTGGACTGGGTAAGAGGAACGATCTGAGAGAGGAAGGGAAGGAGGGAGT
GGGTGGGAAGTGAGAGGAGAAATGTAAAGCCACGAGGCCTGGTGACTCAC
GCTTTCGCTTCCTTTTCGACCGTCCCTCCTTCCTTCCTTCCCTCCCTCCA
TTCCTGCCTTCCTTGCTATTCTCCATCAGAACATGGTACTCATGATTGGA
C
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protein sequence of jgi.p|Nanoce1779_2|611307

>mRNA_10390-protein ID=mRNA_10390-protein|Name=jgi.p|Nanoce1779_2|611307|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MVKRVRIRKGGWQTPYSAGPGTVIALLLFFGASVSMLPLRGETNAVNDKH
RFLRANLPFISSSFSTLSTPSPDWHHKTLWPLDTRDYVTLALATIGLILA
AGEGMGGGVILVPLFILVLDLPLRRAIPLSNVTILVRRSLQRGEERERKG
VGKKRRWGEPAIGRENTCSH*
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mRNA from alignment at scaffold_55:76719..77651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10390 ID=mRNA_10390|Name=jgi.p|Nanoce1779_2|611307|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at scaffold_55:76719..77651+ (Nannochloropsis oceanica)
CAGCAGCCAAGCAGATCATACCAGCACAAGCGCTATGGTCAAAAGAGTGA
GAATACGAAAGGGAGGATGGCAGACCCCCTACTCGGCAGGCCCGGGTACT
GTCATCGCCCTCCTTCTCTTTTTTGGTGCGTCGGTCTCCATGCTGCCGCT
TCGGGGGGAAACTAACGCGGTGAATGACAAGCATCGATGTACGTAAAAGG
CGGTCACTGGTTCTTGAACATTTTGATTTTTTTTCACATCCTTTCGCTCA
CAAACTTCCACCGACAACAGTCTTGCGGGCCAACCTGCCCTTTATCTCCT
CGTCGTTTTCGACTTTGTCTACTCCTTCTCCAGACTGGCATCACAAGACA
CTGTGGCCGCTTGATACACGGGACTATGTCACGCTTGCTCTTGCCACAAT
CGGTTTAATTCTTGCCGCGGGGGAAGGGATGGGAGGCGGGGTCATATTGG
TGCCGCTTTTTATCCTCGTCCTCGACTTGCCGCTGAGACGTGCCATACCC
CTATCGAACGTCACCATATTGGTAAGGAGGTCTTTACAACGAGGGGAGGA
GAGGGAGAGGAAAGGGGTAGGAAAAAAGAGAAGATGGGGCGAACCTGCGA
TTGGTCGTGAAAATACATGTTCTCATTGAGTTATTCGTCACTCGAACACC
TCATGTTTTGCCACCAGGGAGGTGCTCTTGCCAACACGTGGCACTCCCTC
TCTCAGAGTCATCCGCAAGCAAACCGACAACTTGTGGACTGGGTAAGAGG
AACGATCTGAGAGAGGAAGGGAAGGAGGGAGTGGGTGGGAAGTGAGAGGA
GAAATGTAAAGCCACGAGGCCTGGTGACTCACGCTTTCGCTTCCTTTTCG
ACCGTCCCTCCTTCCTTCCTTCCCTCCCTCCATTCCTGCCTTCCTTGCTA
TTCTCCATCAGAACATGGTACTCATGATTGGAC
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Coding sequence (CDS) from alignment at scaffold_55:76719..77651+

>mRNA_10390 ID=mRNA_10390|Name=jgi.p|Nanoce1779_2|611307|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_55:76719..77651+ (Nannochloropsis oceanica)
ATGGTCAAAAGAGTGAGAATACGAAAGGGAGGATGGCAGACCCCCTACTC
GGCAGGCCCGGGTACTGTCATCGCCCTCCTTCTCTTTTTTGGTGCGTCGG
TCTCCATGCTGCCGCTTCGGGGGGAAACTAACGCGGTGAATGACAAGCAT
CGATTCTTGCGGGCCAACCTGCCCTTTATCTCCTCGTCGTTTTCGACTTT
GTCTACTCCTTCTCCAGACTGGCATCACAAGACACTGTGGCCGCTTGATA
CACGGGACTATGTCACGCTTGCTCTTGCCACAATCGGTTTAATTCTTGCC
GCGGGGGAAGGGATGGGAGGCGGGGTCATATTGGTGCCGCTTTTTATCCT
CGTCCTCGACTTGCCGCTGAGACGTGCCATACCCCTATCGAACGTCACCA
TATTGGTAAGGAGGTCTTTACAACGAGGGGAGGAGAGGGAGAGGAAAGGG
GTAGGAAAAAAGAGAAGATGGGGCGAACCTGCGATTGGTCGTGAAAATAC
ATGTTCTCATTGAATGGTCAAAAGAGTGAGAATACGAAAGGGAGGATGGC
AGACCCCCTACTCGGCAGGCCCGGGTACTGTCATCGCCCTCCTTCTCTTT
TTTGGTGCGTCGGTCTCCATGCTGCCGCTTCGGGGGGAAACTAACGCGGT
GAATGACAAGCATCGATTCTTGCGGGCCAACCTGCCCTTTATCTCCTCGT
CGTTTTCGACTTTGTCTACTCCTTCTCCAGACTGGCATCACAAGACACTG
TGGCCGCTTGATACACGGGACTATGTCACGCTTGCTCTTGCCACAATCGG
TTTAATTCTTGCCGCGGGGGAAGGGATGGGAGGCGGGGTCATATTGGTGC
CGCTTTTTATCCTCGTCCTCGACTTGCCGCTGAGACGTGCCATACCCCTA
TCGAACGTCACCATATTGGTAAGGAGGTCTTTACAACGAGGGGAGGAGAG
GGAGAGGAAAGGGGTAGGAAAAAAGAGAAGATGGGGCGAACCTGCGATTG
GTCGTGAAAATACATGTTCTCATTGA
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Synonyms
Publications