jgi.p|Nanoce1779_2|582735, mRNA_3601 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582735
Unique NamemRNA_3601
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2015
Alignment locationscaffold_6:745564..747578 -

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Properties
Property NameValue
TranscriptId582821
TrackFilteredModels2
ProteinId582735
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:745564..747578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582735gene_3601Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582735mRNA_3601-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3601CDS_3601Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3601 ID=mRNA_3601|Name=jgi.p|Nanoce1779_2|582735|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp
ACAGTCACATTCCAGCCACGATGCGGTTGTCATTGGCCTTGTTAACGCTC
GCCACGGGGGCCACCGCCTTCCTCCAACCCAAGCCAGCACTCCATCTGAT
GTCAGCGAGTAGACGCAGCACTGCCGCCCCTGCCGCTACCACGCCGCGTT
TTCGCGTGCTTTCTACACGACAAGGCGCGCTCTTTATGGGGGAGCAGTAT
GATTACGACCTCATAATTGTCGGATGTGGTGTGGGCGGGCACGGCGCTGC
CCTACATGCCCGCTCGGAGGGGCTGAAGACAGCTGTGTTTTCGGGCAAGG
ATGTTGGGGGGACGTGCGTGAACCGCGGTTGCGTGCCGTCCAAGGCCTTG
TTGGCGGCGGCGGGGCGTGTGCGTGAAATGAAGGACGCGCACCACCTGAA
AGCGTTGGGCATCACAGTCGAAGGTGATATAAGCTACGATCGGGCTTCGG
TGGCGGGGCACGCGGCGAACTTGGCCAATAAGGTCAAGGGCAATTTGGAG
AACTCTCTTAAAGCCTTGGGGGTGGATGTGATTGAAGCGAAAGGTGTGCT
GGCGGGCCCGCATAAGGTGATGGGCGAGGGTAAGATCTACACGGCAAAGG
ACATCATCCTGGCACCGGGCTCCTTGCCTTTCGTCCCGCCCGGGGTCGAG
TGCGATGAAAAGACAGTTTTTACTTCCGACGGTGGGTTGAAACTGGAGCG
TGTTCCTGAATACGTGGCCATTATCGGCTCGGGATATATTGGATTGGAGT
TCTCGGATGTCTACACCGCGTTGGGGTCGGAGGTAACATTCATCGAGGCC
ATGGACAGGATCATGCCTACTTTTGACCCAGAAATCGCGCGAGTGGCTGA
GCGGTTGCTGATTAAGCCCCGGGCAATTGACTATAGGACAGGGGTGTTCG
CGTCGAAGGTGACCCCAGGTGTTCCAGGTGTGAAGCCTGTGCGGATTGAG
ATGATCGACGCCAAGACCAAGGAGCTGGTGGAGGTGCTGGAGGTGGACGC
GTGCATGGTGGCTACAGGCCGAGTTCCCAACACAAAAGAATTGGGCCTGG
GGGAGGTTGGTGTAGAGACTTTCAGGGGTTTTGTGCAGGTAGATGAGAAT
ATGCGGGTATTGACGAAGTCCTTCGACGAGGGGGGTGAGGTGGTTCCGAA
TTTGTACTGCATTGGGGATGCGAATGGGAAATTGATGCTTGCCCATGCGG
CTTCAGCGCAGGGGGTGAGCGCTGTGGAGAATATCAAGGGAAGGAAGCAT
GCCGTAGACCATGACACAGTGCCGGCTGCGTGTTTTACGCACCCGGAGGT
AGCATTCGTGGGATTGAGCGAGGAGCAGGCGAAGGCAAAGGGGGAGAAAG
AGGGATTCAAGGTAGGGAAAAGCATTGGACATTTCCGTGCCAATTCCAAG
GCGCTGGCCGAGGGGGAGCCGGATGGAATTGCAAAGGTTTTAGTGAACAA
GGATACAGGCGATTTGTTGGGTGTGCATATTATTGGGTTGCACGCCGCGG
ATTTGATTCAGGAGTGCGCGAATGCCATGGCGGCGAAGACGACGGTGAAT
GAGCTGTCGATGATGGTGCATACCCACCCGACACTGTGTGAGGTGTTGGA
TGAGGCATTCAAGGGCGCTGTGGGCCGCACGGCACATTAAGAGACGTGTG
TCCGTATGTTTGTTCTGTGTGTTCTGTTTGTTTCTGAGTCAGAGTAGCAG
TTTTATCATATATACATACGTGCGCGGTTTCTCTTTTCCGATAGTCAAGT
TTGGAGGAAAGAGAGGGGGGTGAAAAAAGGTCCATAGGAACGTGTGTGTT
TTATGTGTTTTATCTGTGGTGGCTTTTGTGCAGTAGTCCTCAATGTGCTG
TCTGTGCCTGGGTTTTTCCGTATTTATTGGTTAGTGGTTGTGCGAGTCTA
TGTGTCGTTCCTTTTCTTCCCCGTCCCTATGCTGTCCTCCTCGGATCCGG
CTCAATTAGACCATGCTCAAGTTCGAACGACGTATGAAAGAAACAAAAAG
CTTCTGCAGCAGGAA
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protein sequence of jgi.p|Nanoce1779_2|582735

>mRNA_3601-protein ID=mRNA_3601-protein|Name=jgi.p|Nanoce1779_2|582735|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MRLSLALLTLATGATAFLQPKPALHLMSASRRSTAAPAATTPRFRVLSTR
QGALFMGEQYDYDLIIVGCGVGGHGAALHARSEGLKTAVFSGKDVGGTCV
NRGCVPSKALLAAAGRVREMKDAHHLKALGITVEGDISYDRASVAGHAAN
LANKVKGNLENSLKALGVDVIEAKGVLAGPHKVMGEGKIYTAKDIILAPG
SLPFVPPGVECDEKTVFTSDGGLKLERVPEYVAIIGSGYIGLEFSDVYTA
LGSEVTFIEAMDRIMPTFDPEIARVAERLLIKPRAIDYRTGVFASKVTPG
VPGVKPVRIEMIDAKTKELVEVLEVDACMVATGRVPNTKELGLGEVGVET
FRGFVQVDENMRVLTKSFDEGGEVVPNLYCIGDANGKLMLAHAASAQGVS
AVENIKGRKHAVDHDTVPAACFTHPEVAFVGLSEEQAKAKGEKEGFKVGK
SIGHFRANSKALAEGEPDGIAKVLVNKDTGDLLGVHIIGLHAADLIQECA
NAMAAKTTVNELSMMVHTHPTLCEVLDEAFKGAVGRTAH*
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mRNA from alignment at scaffold_6:745564..747578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3601 ID=mRNA_3601|Name=jgi.p|Nanoce1779_2|582735|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp|location=Sequence derived from alignment at scaffold_6:745564..747578- (Nannochloropsis oceanica)
ACAGTCACATTCCAGCCACGATGCGGTTGTCATTGGCCTTGTTAACGCTC
GCCACGGGGGCCACCGCCTTCCTCCAACCCAAGCCAGCACTCCATCTGAT
GTCAGCGAGTAGACGCAGCACTGCCGCCCCTGCCGCTACCACGCCGCGTT
TTCGCGTGCTTTCTACACGACAAGGCGCGCTCTTTATGGGGGAGCAGTAT
GATTACGACCTCATAATTGTCGGATGTGGTGTGGGCGGGCACGGCGCTGC
CCTACATGCCCGCTCGGAGGGGCTGAAGACAGCTGTGTTTTCGGGCAAGG
ATGTTGGGGGGACGTGCGTGAACCGCGGTTGCGTGCCGTCCAAGGCCTTG
TTGGCGGCGGCGGGGCGTGTGCGTGAAATGAAGGACGCGCACCACCTGAA
AGCGTTGGGCATCACAGTCGAAGGTGATATAAGCTACGATCGGGCTTCGG
TGGCGGGGCACGCGGCGAACTTGGCCAATAAGGTCAAGGGCAATTTGGAG
AACTCTCTTAAAGCCTTGGGGGTGGATGTGATTGAAGCGAAAGGTGTGCT
GGCGGGCCCGCATAAGGTGATGGGCGAGGGTAAGATCTACACGGCAAAGG
ACATCATCCTGGCACCGGGCTCCTTGCCTTTCGTCCCGCCCGGGGTCGAG
TGCGATGAAAAGACAGTTTTTACTTCCGACGGTGGGTTGAAACTGGAGCG
TGTTCCTGAATACGTGGCCATTATCGGCTCGGGATATATTGGATTGGAGT
TCTCGGATGTCTACACCGCGTTGGGGTCGGAGGTAACATTCATCGAGGCC
ATGGACAGGATCATGCCTACTTTTGACCCAGAAATCGCGCGAGTGGCTGA
GCGGTTGCTGATTAAGCCCCGGGCAATTGACTATAGGACAGGGGTGTTCG
CGTCGAAGGTGACCCCAGGTGTTCCAGGTGTGAAGCCTGTGCGGATTGAG
ATGATCGACGCCAAGACCAAGGAGCTGGTGGAGGTGCTGGAGGTGGACGC
GTGCATGGTGGCTACAGGCCGAGTTCCCAACACAAAAGAATTGGGCCTGG
GGGAGGTTGGTGTAGAGACTTTCAGGGGTTTTGTGCAGGTAGATGAGAAT
ATGCGGGTATTGACGAAGTCCTTCGACGAGGGGGGTGAGGTGGTTCCGAA
TTTGTACTGCATTGGGGATGCGAATGGGAAATTGATGCTTGCCCATGCGG
CTTCAGCGCAGGGGGTGAGCGCTGTGGAGAATATCAAGGGAAGGAAGCAT
GCCGTAGACCATGACACAGTGCCGGCTGCGTGTTTTACGCACCCGGAGGT
AGCATTCGTGGGATTGAGCGAGGAGCAGGCGAAGGCAAAGGGGGAGAAAG
AGGGATTCAAGGTAGGGAAAAGCATTGGACATTTCCGTGCCAATTCCAAG
GCGCTGGCCGAGGGGGAGCCGGATGGAATTGCAAAGGTTTTAGTGAACAA
GGATACAGGCGATTTGTTGGGTGTGCATATTATTGGGTTGCACGCCGCGG
ATTTGATTCAGGAGTGCGCGAATGCCATGGCGGCGAAGACGACGGTGAAT
GAGCTGTCGATGATGGTGCATACCCACCCGACACTGTGTGAGGTGTTGGA
TGAGGCATTCAAGGGCGCTGTGGGCCGCACGGCACATTAAGAGACGTGTG
TCCGTATGTTTGTTCTGTGTGTTCTGTTTGTTTCTGAGTCAGAGTAGCAG
TTTTATCATATATACATACGTGCGCGGTTTCTCTTTTCCGATAGTCAAGT
TTGGAGGAAAGAGAGGGGGGTGAAAAAAGGTCCATAGGAACGTGTGTGTT
TTATGTGTTTTATCTGTGGTGGCTTTTGTGCAGTAGTCCTCAATGTGCTG
TCTGTGCCTGGGTTTTTCCGTATTTATTGGTTAGTGGTTGTGCGAGTCTA
TGTGTCGTTCCTTTTCTTCCCCGTCCCTATGCTGTCCTCCTCGGATCCGG
CTCAATTAGACCATGCTCAAGTTCGAACGACGTATGAAAGAAACAAAAAG
CTTCTGCAGCAGGAA
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Coding sequence (CDS) from alignment at scaffold_6:745564..747578-

>mRNA_3601 ID=mRNA_3601|Name=jgi.p|Nanoce1779_2|582735|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_6:745564..747578- (Nannochloropsis oceanica)
ATGCGGTTGTCATTGGCCTTGTTAACGCTCGCCACGGGGGCCACCGCCTT
CCTCCAACCCAAGCCAGCACTCCATCTGATGTCAGCGAGTAGACGCAGCA
CTGCCGCCCCTGCCGCTACCACGCCGCGTTTTCGCGTGCTTTCTACACGA
CAAGGCGCGCTCTTTATGGGGGAGCAGTATGATTACGACCTCATAATTGT
CGGATGTGGTGTGGGCGGGCACGGCGCTGCCCTACATGCCCGCTCGGAGG
GGCTGAAGACAGCTGTGTTTTCGGGCAAGGATGTTGGGGGGACGTGCGTG
AACCGCGGTTGCGTGCCGTCCAAGGCCTTGTTGGCGGCGGCGGGGCGTGT
GCGTGAAATGAAGGACGCGCACCACCTGAAAGCGTTGGGCATCACAGTCG
AAGGTGATATAAGCTACGATCGGGCTTCGGTGGCGGGGCACGCGGCGAAC
TTGGCCAATAAGGTCAAGGGCAATTTGGAGAACTCTCTTAAAGCCTTGGG
GGTGGATGTGATTGAAGCGAAAGGTGTGCTGGCGGGCCCGCATAAGGTGA
TGGGCGAGGGTAAGATCTACACGGCAAAGGACATCATCCTGGCACCGGGC
TCCTTGCCTTTCGTCCCGCCCGGGGTCGAGTGCGATGAAAAGACAGTTTT
TACTTCCGACGGTGGGTTGAAACTGGAGCGTGTTCCTGAATACGTGGCCA
TTATCGGCTCGGGATATATTGGATTGGAGTTCTCGGATGTCTACACCGCG
TTGGGGTCGGAGGTAACATTCATCGAGGCCATGGACAGGATCATGCCTAC
TTTTGACCCAGAAATCGCGCGAGTGGCTGAGCGGTTGCTGATTAAGCCCC
GGGCAATTGACTATAGGACAGGGGTGTTCGCGTCGAAGGTGACCCCAGGT
GTTCCAGGTGTGAAGCCTGTGCGGATTGAGATGATCGACGCCAAGACCAA
GGAGCTGGTGGAGGTGCTGGAGGTGGACGCGTGCATGGTGGCTACAGGCC
GAGTTCCCAACACAAAAGAATTGGGCCTGGGGGAGGTTGGTGTAGAGACT
TTCAGGGGTTTTGTGCAGGTAGATGAGAATATGCGGGTATTGACGAAGTC
CTTCGACGAGGGGGGTGAGGTGGTTCCGAATTTGTACTGCATTGGGGATG
CGAATGGGAAATTGATGCTTGCCCATGCGGCTTCAGCGCAGGGGGTGAGC
GCTGTGGAGAATATCAAGGGAAGGAAGCATGCCGTAGACCATGACACAGT
GCCGGCTGCGTGTTTTACGCACCCGGAGGTAGCATTCGTGGGATTGAGCG
AGGAGCAGGCGAAGGCAAAGGGGGAGAAAGAGGGATTCAAGGTAGGGAAA
AGCATTGGACATTTCCGTGCCAATTCCAAGGCGCTGGCCGAGGGGGAGCC
GGATGGAATTGCAAAGGTTTTAGTGAACAAGGATACAGGCGATTTGTTGG
GTGTGCATATTATTGGGTTGCACGCCGCGGATTTGATTCAGGAGTGCGCG
AATGCCATGGCGGCGAAGACGACGGTGAATGAGCTGTCGATGATGGTGCA
TACCCACCCGACACTGTGTGAGGTGTTGGATGAGGCATTCAAGGGCGCTG
TGGGCCGCACGGCACATTAA
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Synonyms
Publications