jgi.p|Nanoce1779_2|613274, mRNA_10838 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613274
Unique Name	mRNA_10838
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1554
Alignment location	scaffold_72:38532..40085 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	613360
Track	FilteredModels2
ProteinId	613274

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_72	supercontig	scaffold_72:38532..40085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613274	gene_10838	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613274	mRNA_10838-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10838	CDS_10838	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_72:38532..40085+
coding sequence from alignment at scaffold_72:38532..40085+

mRNA sequence

>mRNA_10838 ID=mRNA_10838|Name=jgi.p|Nanoce1779_2|613274|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp
CCCAGCACGCGCACATAAGCACCTTCTCCCATCATCGTCTGTAAGAATTT
GCATCATTCGAATGAATTAGCCTCATTCTTTTTGCAGCAGCTTCATTGGC
TTGCATTTATAGTCCACAGGCAACGATGCGACAACGACAACATGGAATCT
CACTTGGCTGACCTCCCCCCCACCACCCCGCCCACACCCCTGCCTCTTCC
GCCACAACAGCGTGGTGTTCCGCTCTATATTTTATTCACCCCACCACCAA
TGTCACTTGACACCTGTTGGCAAATAAACGTTGAGGATCTCAATCAGGTT
TACGGCGGCCGACGAGATCCCCAGACTGGGAGGACACTTCTACACAACGC
GGCCTCCCAAGGAAATTCAGACATCGTCCGCTGGCTGATAGAGGGAAAAA
AAATCAACATCGCTGCACAGGACTTAAAAGGGGTGACAGTACTAGAGTGT
GTGACCATTCTGGGTTGCGCTGCTGGTGTAGCAGTAGTCGAAGTTGTCGA
ATACTTAATGGCGCACCATGCGCCAGAGGATGCGGACCACCTCTTGAAGA
TCGTGAGGGGCATGGGTACGGACGAGGAAAAGTATCTTGAAGTAGTAGCT
TGCGTGCTAAGATACACCAAGGGCGAAACACTGAACTACATCGACCATCA
TTACTACACGCCTTTGGCCTGTGCCTGCGTCAGGGGTTACGCAAAAGTGG
CACACTTGCTCCTCCTTGCGGGTGCTGAAGCTTACGAGACATACCCCTTT
TCCCACTCAAATGCCGTTAAATGGGATCCAGGCAACCGCAACGCATTAGT
AAAGGCCAAGGCGATTTTTGGGCGTGATTCAGCAAAGAAACGTGCGGCGA
GGCTCCGGTGTGTGGCGTTGATCGAGGTATGTGGTTGGTACCCTACGGAC
GGGAAGGAGGCTTAAGTGGGATTATTAGGTTACTCCAATGCATGAGTGAT
ATATCATCTAATCTGCACCTTAATGCTATCGAAGTATTTTTAAAACCTGC
AATGGTGTGAAAAGGTGATATTAACCAGGCGGTGCATGGGTAAAGTGAAA
GAAGGACTGGGCATGCAGGAGCTGACTCAACTCCTCTTGTATATTTGCGA
CTCATCTTCCCTCTAAAATAACTGCAGACTGTGCCTCGAGTCGTCCTCCT
GCATAAATGCCGCGAGCTTCATGGTGCTACTGACTTTCTCAGAGAATGTA
TGGGTGGGGCAGTAGAAGAAATTTATGACATAAAAAAAGAAATTAAGATA
GCCGAGAAACGAGAAAGGCTGCGTGGGATGAGCTTTTTGTGCGATCGAGT
CGAGCCAATGGTCTTGCCTGTGATAGAAATCAATGATAAAGGCGTGGACG
AGGTGGTAGTGGCGTGTGTGCAGCATGTGGTAAAGGGTGGGCTTTTGCCG
GATGTGTGGCACGAATTGTTGGAAATGCTGGACGTATGAGGTTATGTGGG
GGTGAGGAGATTAGAAGGAATATAAATGTACAGTAACAATATGGTATAAC
TCATCATGAAAGATTATGAAATTAAGGAGAAAGTGAATCGAAGCATGTTG
AGGA

protein sequence of jgi.p|Nanoce1779_2|613274

>mRNA_10838-protein ID=mRNA_10838-protein|Name=jgi.p|Nanoce1779_2|613274|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MESHLADLPPTTPPTPLPLPPQQRGVPLYILFTPPPMSLDTCWQINVEDL
NQVYGGRRDPQTGRTLLHNAASQGNSDIVRWLIEGKKINIAAQDLKGVTV
LECVTILGCAAGVAVVEVVEYLMAHHAPEDADHLLKIVRGMGTDEEKYLE
VVACVLRYTKGETLNYIDHHYYTPLACACVRGYAKVAHLLLLAGAEAYET
YPFSHSNAVKWDPGNRNALVKAKAIFGRDSAKKRAARLRCVALIEVCGWY
PTDGKEA*

mRNA from alignment at scaffold_72:38532..40085+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10838 ID=mRNA_10838|Name=jgi.p|Nanoce1779_2|613274|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at scaffold_72:38532..40085+ (Nannochloropsis oceanica)
CCCAGCACGCGCACATAAGCACCTTCTCCCATCATCGTCTGTAAGAATTT
GCATCATTCGAATGAATTAGCCTCATTCTTTTTGCAGCAGCTTCATTGGC
TTGCATTTATAGTCCACAGGCAACGATGCGACAACGACAACATGGAATCT
CACTTGGCTGACCTCCCCCCCACCACCCCGCCCACACCCCTGCCTCTTCC
GCCACAACAGCGTGGTGTTCCGCTCTATATTTTATTCACCCCACCACCAA
TGTCACTTGACACCTGTTGGCAAATAAACGTTGAGGATCTCAATCAGGTT
TACGGCGGCCGACGAGATCCCCAGACTGGGAGGACACTTCTACACAACGC
GGCCTCCCAAGGAAATTCAGACATCGTCCGCTGGCTGATAGAGGGAAAAA
AAATCAACATCGCTGCACAGGACTTAAAAGGGGTGACAGTACTAGAGTGT
GTGACCATTCTGGGTTGCGCTGCTGGTGTAGCAGTAGTCGAAGTTGTCGA
ATACTTAATGGCGCACCATGCGCCAGAGGATGCGGACCACCTCTTGAAGA
TCGTGAGGGGCATGGGTACGGACGAGGAAAAGTATCTTGAAGTAGTAGCT
TGCGTGCTAAGATACACCAAGGGCGAAACACTGAACTACATCGACCATCA
TTACTACACGCCTTTGGCCTGTGCCTGCGTCAGGGGTTACGCAAAAGTGG
CACACTTGCTCCTCCTTGCGGGTGCTGAAGCTTACGAGACATACCCCTTT
TCCCACTCAAATGCCGTTAAATGGGATCCAGGCAACCGCAACGCATTAGT
AAAGGCCAAGGCGATTTTTGGGCGTGATTCAGCAAAGAAACGTGCGGCGA
GGCTCCGGTGTGTGGCGTTGATCGAGGTATGTGGTTGGTACCCTACGGAC
GGGAAGGAGGCTTAAGTGGGATTATTAGGTTACTCCAATGCATGAGTGAT
ATATCATCTAATCTGCACCTTAATGCTATCGAAGTATTTTTAAAACCTGC
AATGGTGTGAAAAGGTGATATTAACCAGGCGGTGCATGGGTAAAGTGAAA
GAAGGACTGGGCATGCAGGAGCTGACTCAACTCCTCTTGTATATTTGCGA
CTCATCTTCCCTCTAAAATAACTGCAGACTGTGCCTCGAGTCGTCCTCCT
GCATAAATGCCGCGAGCTTCATGGTGCTACTGACTTTCTCAGAGAATGTA
TGGGTGGGGCAGTAGAAGAAATTTATGACATAAAAAAAGAAATTAAGATA
GCCGAGAAACGAGAAAGGCTGCGTGGGATGAGCTTTTTGTGCGATCGAGT
CGAGCCAATGGTCTTGCCTGTGATAGAAATCAATGATAAAGGCGTGGACG
AGGTGGTAGTGGCGTGTGTGCAGCATGTGGTAAAGGGTGGGCTTTTGCCG
GATGTGTGGCACGAATTGTTGGAAATGCTGGACGTATGAGGTTATGTGGG
GGTGAGGAGATTAGAAGGAATATAAATGTACAGTAACAATATGGTATAAC
TCATCATGAAAGATTATGAAATTAAGGAGAAAGTGAATCGAAGCATGTTG
AGGA

Coding sequence (CDS) from alignment at scaffold_72:38532..40085+

>mRNA_10838 ID=mRNA_10838|Name=jgi.p|Nanoce1779_2|613274|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_72:38532..40085+ (Nannochloropsis oceanica)
ATGGAATCTCACTTGGCTGACCTCCCCCCCACCACCCCGCCCACACCCCT
GCCTCTTCCGCCACAACAGCGTGGTGTTCCGCTCTATATTTTATTCACCC
CACCACCAATGTCACTTGACACCTGTTGGCAAATAAACGTTGAGGATCTC
AATCAGGTTTACGGCGGCCGACGAGATCCCCAGACTGGGAGGACACTTCT
ACACAACGCGGCCTCCCAAGGAAATTCAGACATCGTCCGCTGGCTGATAG
AGGGAAAAAAAATCAACATCGCTGCACAGGACTTAAAAGGGGTGACAGTA
CTAGAGTGTGTGACCATTCTGGGTTGCGCTGCTGGTGTAGCAGTAGTCGA
AGTTGTCGAATACTTAATGGCGCACCATGCGCCAGAGGATGCGGACCACC
TCTTGAAGATCGTGAGGGGCATGGGTACGGACGAGGAAAAGTATCTTGAA
GTAGTAGCTTGCGTGCTAAGATACACCAAGGGCGAAACACTGAACTACAT
CGACCATCATTACTACACGCCTTTGGCCTGTGCCTGCGTCAGGGGTTACG
CAAAAGTGGCACACTTGCTCCTCCTTGCGGGTGCTGAAGCTTACGAGACA
TACCCCTTTTCCCACTCAAATGCCGTTAAATGGGATCCAGGCAACCGCAA
CGCATTAGTAAAGGCCAAGGCGATTTTTGGGCGTGATTCAGCAAAGAAAC
GTGCGGCGAGGCTCCGGTGTGTGGCGTTGATCGAGGTATGTGGTTGGTAC
CCTACGGACGGGAAGGAGGCTTAA

Synonyms

Publications