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Properties
| Property Name | Value |
|---|
| TranscriptId | 613942 |
| Track | FilteredModels2 |
| ProteinId | 613856 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_79 | supercontig | scaffold_79:16917..19844 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10883 ID=mRNA_10883|Name=jgi.p|Nanoce1779_2|613856|organism=Nannochloropsis oceanica|type=mRNA|length=2550bp
CCTCCCCGGGGCGCACAAGCAACCGCCCCTACCACAAGCATCAGTGCCTG
CACCACTAGTACGACGACCACCACCACCACCACCAGCGGCAAGGGAAGCA
AATGTAAAAGCACAACAAGAGCAACACCACCAGCGCCGAAGCTCTGCCCG
CCAGCTCCTCCAAGAACAAGCAGGTTGTCTCCCCGGGGCGTGTAATGTCC
TTCCCGACTGGGAATATGATGTATACGACTTCTTCACCCACATCGTCCCC
AAGCTCCACCCAGATATTTTGATCGTTAACAGCGGGCATTGGGCTCGCCT
GCCGGGAGAATATGACATGCCCCGCTTGAGTGAAGTGGTTCGGGAAGCAG
TGCGAGCGTCGGGAGGTAGAGCTATTTGGAAAACGACCACCGCACGTAGG
GAGCCCGCTGCCTTCCTTCCTGAAGACGATCTCAAGGAATATTTTCATGG
CGAAGGCTTCAGCATCCTCGATGCTGGCGCTATCACATATGCGGCTCGCG
GCATTGAAACACACTTAAATGAGACTCAAAACACGCACCTGTATTGGGAC
ACATTGCACTTTTACGCTCCGATCTACGCGGGTTTGAATAACGTCTTGCT
CAATTACATTTGTCCGGTGTAGTGCGGGGGACACACATGCGTGCGTCAAT
GTAGCACAGAGGGGAAAAGATCGTAGGATGGATAAGAAGGTTGAGGGCTG
GCGTCAAAGTTGGACACATGATAACGAAGAAGTTTCCCCTGCAGCTGCAA
AAGGGAGCTGTGGAAGTGAATAAGGGGGCGAGCGAATCCACCCTTGACCA
GAGGTTTTGTACAGACTTACAATTGAGGTTTATGAGAAGTCGTAAATTAC
ATATCATCAATGAAAGGCATAAACGGACTGTATAAAATTGATACCTCGCT
TTTCGATCTCCTAGTCGACCTTCCTTCCCATCGCGCTTATCCTGCTGTGG
ATCGTTTTGATGCAAAAATCATGCTCAATTCGCTTCTGCATGCTATGCCA
CTACGGCGTCCTCAAACCTAGTAATCTCACGCTCATTTATCAGTGTATTC
ATCTATGTGACACCTACAACCTCCTGGTTCCTGCTCGTTGAAGAAAAATA
TTATAAAAATAGCAGCATTTTATCAATTCGATCAATTCACCACACGCCAC
ATTACTGCACAGCCATGTTGTCCCTGTCTCTCGTCTGGTCGCTTCTGACG
GTGGTGGGCGTCCTCCCGCTGCGGCCATGCTCTGCGAAGCTCGTCCTGTA
CGACAATACTCGGCCAATGCTCGACACGGAGGGCCGCATTCTAGATGCTC
ACGACGGCACCATTCAGCGCTTCCACGATGACGGGCCATACTACATGCAC
GCGGTAGAGTACGGACTTTGTCAGGCACCGAATGTGACTGGTTGTGACTC
GCCTGATCGCTGCGGCTTCCGGCTGGACCACAATGTCAGTGTTTACGCCA
GCTGGGACCTGAGCAGCGGGTCCTGGGCTTTTCAAGGGTACGCTTTCCAT
TGGACGGAGCGCCCGGCCGGCACACTTTTCAGGCCCTCCGCCGTCTTTAA
TCCCAACACGTGCGAGTATGTGCTGTGGTGGAATTATGTGTACCCCAATG
GGACGTATGCAGGCTTCGCTGTAGCTACGTCCTCAAAGCCTGAGGGACAC
TTTGAGCAACGCCGCACAGTGGTGCCAATCGCCCATTTACCCGCCGGGGA
TTTCCATTTGTTTGTCGACGATGACGGCACGGGTTATGTATTGTATTCAG
CAGACTTTTGGATCACAGTCCAAGAGCTGACACGTGATTTCTTGTCGGTC
ACGGAGAAGATATTCGATGGCTTTCGGGGGAATCAGTCAGAATGGGGCTG
GGAGGCTCCGGTCATGTTCAAAAGACAGGGATTGTATTACATCTTGACTG
GCCCCATGTGTTGCTTTTGTTATCAAGGGTCGGGTATTCGTGTGTATACC
GCGTCGTCGCCTCTAGGGCCGTATACATTCCAAGGCCAGGACATTGCCTG
TCAGACTACAAGAAGCAGTAGCAGTAGCAGTAGCAGTAGCAGCCTAATCC
TCTCCCCCGCTACTGCTGTTGCCGACGGTCCCGTCTCAACACCAAATCAG
GGCTGCCTCTTCTATAGTTCAGATCAAGCATCCGCAACGCGAGCCCAGCA
GAATTTTGTGGTGGAAGTCCGAACAGCAGCAGGGGAGACTGAGTACCTAT
GGACGGGTGATCGTTGGATGCAGTCCCCAGATGGTTTGAAGGGCCATGAG
CCGCAGTATTGGTTCCCCTTGACCTTTGATAATGAGGGGGTGATTGGGAG
GGTGACATGGGTGGATTTATTTGTATTAGACTTGGCGGATCCGGTGGAGG
AGGAGGCGCGGGACTTGTCTGTGAGTGTGAGTCGGAGATAAAAGGAAAGA
GAAAGGGAGAAAAAGGACGGGGGTAGAACAGAGATCATGGAAGAGGAAAT
GTTGGAGAAGAAGTGACGAAAAAAGAAAAGAGTGTACATATCATGTAATG
TTTGATAAATTAACACGAAAAGCAACCAAACTAAAAATCCGGCAGCATCA back to topprotein sequence of jgi.p|Nanoce1779_2|613856 >mRNA_10883-protein ID=mRNA_10883-protein|Name=jgi.p|Nanoce1779_2|613856|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MLSLSLVWSLLTVVGVLPLRPCSAKLVLYDNTRPMLDTEGRILDAHDGTI
QRFHDDGPYYMHAVEYGLCQAPNVTGCDSPDRCGFRLDHNVSVYASWDLS
SGSWAFQGYAFHWTERPAGTLFRPSAVFNPNTCEYVLWWNYVYPNGTYAG
FAVATSSKPEGHFEQRRTVVPIAHLPAGDFHLFVDDDGTGYVLYSADFWI
TVQELTRDFLSVTEKIFDGFRGNQSEWGWEAPVMFKRQGLYYILTGPMCC
FCYQGSGIRVYTASSPLGPYTFQGQDIACQTTRSSSSSSSSSSLILSPAT
AVADGPVSTPNQGCLFYSSDQASATRAQQNFVVEVRTAAGETEYLWTGDR
WMQSPDGLKGHEPQYWFPLTFDNEGVIGRVTWVDLFVLDLADPVEEEARD
LSVSVSRR* back to topmRNA from alignment at scaffold_79:16917..19844- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10883 ID=mRNA_10883|Name=jgi.p|Nanoce1779_2|613856|organism=Nannochloropsis oceanica|type=mRNA|length=2928bp|location=Sequence derived from alignment at scaffold_79:16917..19844- (Nannochloropsis oceanica)
CCTCCCCGGGGCGCACAAGCAACCGCCCCTACCACAAGCATCAGTGCCTG
CACCACTAGTACGACGACCACCACCACCACCACCAGCGGCAAGGGAAGCA
AATGTAAAAGCACAACAAGAGCAACACCACCAGCGCCGAAGCTCTGCCCG
CCAGCTCCTCCAAGAACAAGCAGGTTGTCTCCCCGGGGCGTGTAATGTCC
TTCCCGACTGGGAATATGATGTATACGACTTCTTCACCCACATCGTCCCC
AAGCTCCACCCAGATATTTTGATCGTTAACAGCGGGCATTGGGCTCGCCT
GCCGGGAGAATATGACATGCCCCGCTTGAGTGAAGTGGTTCGGGAAGCAG
TGCGAGCGTCGGGAGGTAGAGCTATTTGGAAAACGACCACCGCACGTAGG
TAAGTAGGAAGAGAGAAGGGAAGAGATGAGAGTTTTGAATTATGTGATGC
ATCTATTTTTCTATCTCATCATTTCACTTTATTTATGATCAATACCATCC
CTCCCCTTCACCTGTACACCCCACCCCAACCTCAGGGAGCCCGCTGCCTT
CCTTCCTGAAGACGATCTCAAGGAATATTTTCATGGCGAAGGCTTCAGCA
TCCTCGATGCTGGCGCTATCACATATGCGGCTCGCGGCATTGAAACACAC
TTAAATGAGACTCAAAACACGCACCTGTATTGGGACACATTGCACTTTTA
CGCTCCGATCTACGCGGGTTTGAATAACGTCTTGCTCAATTACATTTGTC
CGGTGTAGTGCGGGGGACACACATGCGTGCGTCAATGTAGCACAGAGGGG
AAAAGATCGTAGGATGGATAAGAAGGTTGAGGGCTGGCGTCAAAGTTGGA
CACATGATAACGAAGAAGTTTCCCCTGCAGCTGCAAAAGGGAGCTGTGGA
AGTGAATAAGGGGGCGAGCGAATCCACCCTTGACCAGAGGTTTTGTACAG
ACTTACAATTGAGGTTTATGAGAAGTCGTAAATTACATATCATCAATGAA
AGGCATAAACGGACTGTATAAAATTGATACCTCGCTTTTCGATCTCCTAG
TCGACCTTCCTTCCCATCGCGCTTATCCTGCTGTGGATCGTTTTGATGCA
AAAATCATGCTCAATTCGCTTCTGCATGCTATGCCACTACGGCGTCCTCA
AACCTAGTAATCTCACGCTCATTTATCAGTGTATTCATCTATGTGACACC
TACAACCTCCTGGTTCCTGCTCGTTGAAGAAAAATATTATAAAAATAGCA
GCATTTTATCAATTCGATCAATTCACCACACGCCACATTACTGCACAGCC
ATGTTGTCCCTGTCTCTCGTCTGGTCGCTTCTGACGGTGGTGGGCGTCCT
CCCGCTGCGGCCATGCTCTGCGAAGCTCGTCCTGTACGACAATACTCGGC
CAATGCTCGACACGGAGGGCCGCATTCTAGATGCTCACGACGGCACCATT
CAGCGCTTCCACGATGACGGGCCATACTACATGCACGCGGTAGAGTACGG
ACTTTGTCAGGTGAGGGTTTCGGAATGGTTGTGTGTGTGTGTTTTGGGGG
GGGGGGGGCGCGCAGGTCGGGCACCGCACGAAGCAAAGGAAATGCCTGTG
GGAAAGTCGAGGTCTTTCGTCGCACCCTTCCCAATCTGATCATCGACCCA
CACACAAACGCTATCCTACGTAGGCACCGAATGTGACTGGTTGTGACTCG
CCTGATCGCTGCGGCTTCCGGCTGGACCACAATGTCAGTGTTTACGCCAG
CTGGGACCTGAGCAGCGGGTCCTGGGCTTTTCAAGGGTACGCTTTCCATT
GGACGGAGCGCCCGGCCGGCACACTTTTCAGGCCCTCCGCCGTCTTTAAT
CCCAACACGTGCGAGTATGTGCTGTGGTGGAATTATGTGTACCCCAATGG
GACGTATGCAGGCTTCGCTGTAGCTACGTCCTCAAAGCCTGAGGGACACT
TTGAGCAACGCCGCACAGTGGTGCCAATCGCCCATTTACCCGCCGGGGAT
TTCCATTTGTTTGTCGACGATGACGGCACGGGTTATGTATTGTATTCAGC
AGACTTTTGGATCACAGTCCAAGAGCTGACACGTGATTTCTTGTCGGTCA
CGGAGAAGATATTCGATGGCTTTCGGGGGAATCAGTCAGAATGGGGCTGG
GAGGCTCCGGTCATGTTCAAAAGACAGGGATTGTATTACATCTTGACTGG
CCCCATGTGTTGCTTTTGTTATCAAGGGTCGGGTATTCGTGTGTATACCG
CGTCGTCGCCTCTAGGGCCGTATACATTCCAAGGCCAGGACATTGCCTGT
CAGACTACAAGAAGCAGTAGCAGTAGCAGTAGCAGTAGCAGCCTAATCCT
CTCCCCCGCTACTGCTGTTGCCGACGGTCCCGTCTCAACACCAAATCAGG
GCTGCCTCTTCTATAGTTCAGATCAAGCATCCGCAACGCGAGCCCAGCAG
AATTTTGTGGTGGAAGTCCGAACAGCAGCAGGGGAGACTGAGTACCTATG
GACGGGTGATCGTTGGATGCAGGTACGCCGCCCCCTCCTTCCCTCCTCCC
TCACTTTCACACTTCGCTCACCTTTTCTTTTCCTACCTCCTTTACACACA
GTCCCCAGATGGTTTGAAGGGCCATGAGCCGCAGTATTGGTTCCCCTTGA
CCTTTGATAATGAGGGGGTGATTGGGAGGGTGACATGGGTGGATTTATTT
GTATTAGACTTGGCGGATCCGGTGGAGGAGGAGGCGCGGGACTTGTCTGT
GAGTGTGAGTCGGAGATAAAAGGAAAGAGAAAGGGAGAAAAAGGACGGGG
GTAGAACAGAGATCATGGAAGAGGAAATGTTGGAGAAGAAGTGACGAAAA
AAGAAAAGAGTGTACATATCATGTAATGTTTGATAAATTAACACGAAAAG
CAACCAAACTAAAAATCCGGCAGCATCA back to topCoding sequence (CDS) from alignment at scaffold_79:16917..19844- >mRNA_10883 ID=mRNA_10883|Name=jgi.p|Nanoce1779_2|613856|organism=Nannochloropsis oceanica|type=CDS|length=3681bp|location=Sequence derived from alignment at scaffold_79:16917..19844- (Nannochloropsis oceanica)
TCCCCAGATGGTTTGAAGGGCCATGAGCCGCAGTATTGGTTCCCCTTGAC
CTTTGATAATGAGGGGGTGATTGGGAGGGTGACATGGGTGGATTTATTTG
TATTAGACTTGGCGGATCCGGTGGAGGAGGAGGCGCGGGACTTGTCTGTG
AGTGTGAGTCGGAGATAAGCACCGAATGTGACTGGTTGTGACTCGCCTGA
TCGCTGCGGCTTCCGGCTGGACCACAATGTCAGTGTTTACGCCAGCTGGG
ACCTGAGCAGCGGGTCCTGGGCTTTTCAAGGGTACGCTTTCCATTGGACG
GAGCGCCCGGCCGGCACACTTTTCAGGCCCTCCGCCGTCTTTAATCCCAA
CACGTGCGAGTATGTGCTGTGGTGGAATTATGTGTACCCCAATGGGACGT
ATGCAGGCTTCGCTGTAGCTACGTCCTCAAAGCCTGAGGGACACTTTGAG
CAACGCCGCACAGTGGTGCCAATCGCCCATTTACCCGCCGGGGATTTCCA
TTTGTTTGTCGACGATGACGGCACGGGTTATGTATTGTATTCAGCAGACT
TTTGGATCACAGTCCAAGAGCTGACACGTGATTTCTTGTCGGTCACGGAG
AAGATATTCGATGGCTTTCGGGGGAATCAGTCAGAATGGGGCTGGGAGGC
TCCGGTCATGTTCAAAAGACAGGGATTGTATTACATCTTGACTGGCCCCA
TGTGTTGCTTTTGTTATCAAGGGTCGGGTATTCGTGTGTATACCGCGTCG
TCGCCTCTAGGGCCGTATACATTCCAAGGCCAGGACATTGCCTGTCAGAC
TACAAGAAGCAGTAGCAGTAGCAGTAGCAGTAGCAGCCTAATCCTCTCCC
CCGCTACTGCTGTTGCCGACGGTCCCGTCTCAACACCAAATCAGGGCTGC
CTCTTCTATAGTTCAGATCAAGCATCCGCAACGCGAGCCCAGCAGAATTT
TGTGGTGGAAGTCCGAACAGCAGCAGGGGAGACTGAGTACCTATGGACGG
GTGATCGTTGGATGCAGATGTTGTCCCTGTCTCTCGTCTGGTCGCTTCTG
ACGGTGGTGGGCGTCCTCCCGCTGCGGCCATGCTCTGCGAAGCTCGTCCT
GTACGACAATACTCGGCCAATGCTCGACACGGAGGGCCGCATTCTAGATG
CTCACGACGGCACCATTCAGCGCTTCCACGATGACGGGCCATACTACATG
CACGCGGTAGAGTACGGACTTTGTCAGTCCCCAGATGGTTTGAAGGGCCA
TGAGCCGCAGTATTGGTTCCCCTTGACCTTTGATAATGAGGGGGTGATTG
GGAGGGTGACATGGGTGGATTTATTTGTATTAGACTTGGCGGATCCGGTG
GAGGAGGAGGCGCGGGACTTGTCTGTGAGTGTGAGTCGGAGATAAGCACC
GAATGTGACTGGTTGTGACTCGCCTGATCGCTGCGGCTTCCGGCTGGACC
ACAATGTCAGTGTTTACGCCAGCTGGGACCTGAGCAGCGGGTCCTGGGCT
TTTCAAGGGTACGCTTTCCATTGGACGGAGCGCCCGGCCGGCACACTTTT
CAGGCCCTCCGCCGTCTTTAATCCCAACACGTGCGAGTATGTGCTGTGGT
GGAATTATGTGTACCCCAATGGGACGTATGCAGGCTTCGCTGTAGCTACG
TCCTCAAAGCCTGAGGGACACTTTGAGCAACGCCGCACAGTGGTGCCAAT
CGCCCATTTACCCGCCGGGGATTTCCATTTGTTTGTCGACGATGACGGCA
CGGGTTATGTATTGTATTCAGCAGACTTTTGGATCACAGTCCAAGAGCTG
ACACGTGATTTCTTGTCGGTCACGGAGAAGATATTCGATGGCTTTCGGGG
GAATCAGTCAGAATGGGGCTGGGAGGCTCCGGTCATGTTCAAAAGACAGG
GATTGTATTACATCTTGACTGGCCCCATGTGTTGCTTTTGTTATCAAGGG
TCGGGTATTCGTGTGTATACCGCGTCGTCGCCTCTAGGGCCGTATACATT
CCAAGGCCAGGACATTGCCTGTCAGACTACAAGAAGCAGTAGCAGTAGCA
GTAGCAGTAGCAGCCTAATCCTCTCCCCCGCTACTGCTGTTGCCGACGGT
CCCGTCTCAACACCAAATCAGGGCTGCCTCTTCTATAGTTCAGATCAAGC
ATCCGCAACGCGAGCCCAGCAGAATTTTGTGGTGGAAGTCCGAACAGCAG
CAGGGGAGACTGAGTACCTATGGACGGGTGATCGTTGGATGCAGATGTTG
TCCCTGTCTCTCGTCTGGTCGCTTCTGACGGTGGTGGGCGTCCTCCCGCT
GCGGCCATGCTCTGCGAAGCTCGTCCTGTACGACAATACTCGGCCAATGC
TCGACACGGAGGGCCGCATTCTAGATGCTCACGACGGCACCATTCAGCGC
TTCCACGATGACGGGCCATACTACATGCACGCGGTAGAGTACGGACTTTG
TCAGTCCCCAGATGGTTTGAAGGGCCATGAGCCGCAGTATTGGTTCCCCT
TGACCTTTGATAATGAGGGGGTGATTGGGAGGGTGACATGGGTGGATTTA
TTTGTATTAGACTTGGCGGATCCGGTGGAGGAGGAGGCGCGGGACTTGTC
TGTGAGTGTGAGTCGGAGATAAGCACCGAATGTGACTGGTTGTGACTCGC
CTGATCGCTGCGGCTTCCGGCTGGACCACAATGTCAGTGTTTACGCCAGC
TGGGACCTGAGCAGCGGGTCCTGGGCTTTTCAAGGGTACGCTTTCCATTG
GACGGAGCGCCCGGCCGGCACACTTTTCAGGCCCTCCGCCGTCTTTAATC
CCAACACGTGCGAGTATGTGCTGTGGTGGAATTATGTGTACCCCAATGGG
ACGTATGCAGGCTTCGCTGTAGCTACGTCCTCAAAGCCTGAGGGACACTT
TGAGCAACGCCGCACAGTGGTGCCAATCGCCCATTTACCCGCCGGGGATT
TCCATTTGTTTGTCGACGATGACGGCACGGGTTATGTATTGTATTCAGCA
GACTTTTGGATCACAGTCCAAGAGCTGACACGTGATTTCTTGTCGGTCAC
GGAGAAGATATTCGATGGCTTTCGGGGGAATCAGTCAGAATGGGGCTGGG
AGGCTCCGGTCATGTTCAAAAGACAGGGATTGTATTACATCTTGACTGGC
CCCATGTGTTGCTTTTGTTATCAAGGGTCGGGTATTCGTGTGTATACCGC
GTCGTCGCCTCTAGGGCCGTATACATTCCAAGGCCAGGACATTGCCTGTC
AGACTACAAGAAGCAGTAGCAGTAGCAGTAGCAGTAGCAGCCTAATCCTC
TCCCCCGCTACTGCTGTTGCCGACGGTCCCGTCTCAACACCAAATCAGGG
CTGCCTCTTCTATAGTTCAGATCAAGCATCCGCAACGCGAGCCCAGCAGA
ATTTTGTGGTGGAAGTCCGAACAGCAGCAGGGGAGACTGAGTACCTATGG
ACGGGTGATCGTTGGATGCAGATGTTGTCCCTGTCTCTCGTCTGGTCGCT
TCTGACGGTGGTGGGCGTCCTCCCGCTGCGGCCATGCTCTGCGAAGCTCG
TCCTGTACGACAATACTCGGCCAATGCTCGACACGGAGGGCCGCATTCTA
GATGCTCACGACGGCACCATTCAGCGCTTCCACGATGACGGGCCATACTA
CATGCACGCGGTAGAGTACGGACTTTGTCAG back to top
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