jgi.p|Nanoce1779_2|616986, mRNA_12215 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|616986
Unique Name	mRNA_12215
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2178
Alignment location	scaffold_128:14227..16404 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	617072
Track	FilteredModels2
ProteinId	616986

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_128	supercontig	scaffold_128:14227..16404 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616986	gene_12215	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616986	mRNA_12215-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12215	CDS_12215	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_128:14227..16404+
coding sequence from alignment at scaffold_128:14227..16404+

mRNA sequence

>mRNA_12215 ID=mRNA_12215|Name=jgi.p|Nanoce1779_2|616986|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp
ACAGACTGGACATCTCACACTTCCTCGTAGAGCGTGGTTCTGTGCCTATG
GTGACAACCATAAGTAAATTACCACGTCTCATGCAATAAGCTAAGGCAGG
AGGGTGACTTCGATGCGTAGTGTCCAACATCGATACGTCCAAGCCTAAGC
TCCCAAGGAAATATGCTCCCACTACCGGTTCTTGCCGCTTGCGCCATCTA
AGGTCTTCCGGGCAATGCGGCGGCCTTCCGGGCAATGCGGCGGCGGCGCT
ATACAGGACGCTAGCGCTGTGCATGAGGGACGATAAGCGACATGTGCATA
TTCTGCTTACCCAACACAACAAAGGACTTCACTGGGCCCATCGTAAGAGG
ACGGGGAGGGAGAGGACGAGCCAAGGGTGTGGCACCTCTCGCCTCATCCT
CTCCCTCCTCGTCCTCCTCCCCGCCTTCGGCCTCTGATCGCTCGCCCCCT
TTGGCCCCTGATCCCTCCCTCTCTGCGTTGTCCTTTTTAGCTGCATTTGG
TCTCGCGAATTGACGTGTGTGCAGCATCATCACCACCTCTTCGTCCAGCC
CCTCCTGCTCCAGCTTGCACTCAAACGGCCGGAGTGAGGAGCAGGTGGAG
CTGGGGGGAGGGATCGGGGGCCGAAGGGGGGGAGGAGGACGGGGAGGGAG
AGAACGAGACGAGTGGTGCCATCCCTGTCTCGTCGTCATCACTACCCCAA
GGCGCAAAGACAAAGAGGTGGGCAGCAGTGACCCTCCCTCACACGATGAA
GATGAGTGAATTGATGCTTTTGTTGTGTCAGTATTTGAAGGACAAGACTT
TGGAGCACTATGTTTATGTGCACACGCAGCGCAAGTCCATGCGCTTCCTA
CGCCTCAACCTCCCCAACGGCCACCTCATCATCCTGGTGGACTTCGCCAT
GATTTTCTCGGCCTTCTTCATGGAGCAAGCAAAAGACGCCTTCATGTCCT
CTGCTCAGACGACCGTGGTGTGGCGGCACGTGAATTTGGGAACGGGCATG
TATGTGGACAAGGTGTGGGTCGATGACACGAAGGTCGTTCAAGAGCGGCA
CATCTTTGCGTCGGCAAGCCCTAGGCACGACATCGAATTCGTGCAGGTCA
GCCTAAATCATCTCCTTGCCTTCGACATGACTTATCTGGACCCGTTTCGG
TATACGATCATGTTGCCTTGCCGAGACCAAAGAGGGACGCGACGCACTTG
CTTCCCGCTGTCGGTGGTAAATGTAAGGGGCATTTGACTTGATGCTCGCC
AAGAGTCCCATTTTTTGTGTTTCTTGTACTTAGGAAGTTTCTCTGTACCT
TTGTGTATAGGAAAGAGAAAAGGGAGGCCCAGGTGTATGTGAGTACAACG
CCAACCTCCCAGCAGAGCGAGGCGGCGGCCAAGAAGGACGTAAGAAATGT
CACAAATAAACAAATAATGTTCATAGAAAGGAATATCTGTTGACTCACAA
GGGGGCTGCCTTGAAGCGTCACAGCAGTCTGCTAGGGATGGTATTGGCGA
AGGAGGAATTCCAATATAGGTATCAGCTTACGTAAGAAATTCTCCAAATT
ATATCACAGTCCACATGATTACACTTTAAACAATTCGATGAGAAAAACTT
CACTTTTGTCACTTCAAAAAAAAAGATCGCCTGCTAAAGCTTTGTACAAG
GCCTCGGGAAACAAGTACACGTAATGACATTAACGTTTCTCTGTAGTTCC
TACCACTTTTTATATATTAAGAACTATGAAGCCGTAAGCTTGAATACCAG
CAAGCTCTAAAACCACCAATATGAATAATAAGTCAAGAGACGAAATAAAG
CTACATTAAATGGAGCCCCTTCTTTCATCACTCCTCATGCAAAGCCTGCA
GAAAATTTCAAAAGAGTATGACCAGCCATCATGTTTGAAAGATAAATTGC
TAGGCTTATCTCCATAAGACCCAGCAAAAAGCCGATGATATAGCCGTACT
TACAAAAAAATATTATGAAAATTTGTGCCGGATATACTCACTTTGATGAT
CGCTGTATAAGCCCGTGCCGGCGATACTCAGTTTGATGATCGCTGTATAA
GCCCCCGAAAAAAATTACAATGGTATGTATGCCACCAAGGTTTAAAAAAA
AAGAATAATATACGTTTAAGATTCGACGACCAAGGAAAGGATAAAACCAA
GTGTGATATAAAAATAAAAAGGTACGAG

protein sequence of jgi.p|Nanoce1779_2|616986

>mRNA_12215-protein ID=mRNA_12215-protein|Name=jgi.p|Nanoce1779_2|616986|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MKMSELMLLLCQYLKDKTLEHYVYVHTQRKSMRFLRLNLPNGHLIILVDF
AMIFSAFFMEQAKDAFMSSAQTTVVWRHVNLGTGMYVDKVWVDDTKVVQE
RHIFASASPRHDIEFVQVSLNHLLAFDMTYLDPFRYTIMLPCRDQRGTRR
TCFPLSVVNVRGI*

mRNA from alignment at scaffold_128:14227..16404+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12215 ID=mRNA_12215|Name=jgi.p|Nanoce1779_2|616986|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at scaffold_128:14227..16404+ (Nannochloropsis oceanica)
ACAGACTGGACATCTCACACTTCCTCGTAGAGCGTGGTTCTGTGCCTATG
GTGACAACCATAAGTAAATTACCACGTCTCATGCAATAAGCTAAGGCAGG
AGGGTGACTTCGATGCGTAGTGTCCAACATCGATACGTCCAAGCCTAAGC
TCCCAAGGAAATATGCTCCCACTACCGGTTCTTGCCGCTTGCGCCATCTA
AGGTCTTCCGGGCAATGCGGCGGCCTTCCGGGCAATGCGGCGGCGGCGCT
ATACAGGACGCTAGCGCTGTGCATGAGGGACGATAAGCGACATGTGCATA
TTCTGCTTACCCAACACAACAAAGGACTTCACTGGGCCCATCGTAAGAGG
ACGGGGAGGGAGAGGACGAGCCAAGGGTGTGGCACCTCTCGCCTCATCCT
CTCCCTCCTCGTCCTCCTCCCCGCCTTCGGCCTCTGATCGCTCGCCCCCT
TTGGCCCCTGATCCCTCCCTCTCTGCGTTGTCCTTTTTAGCTGCATTTGG
TCTCGCGAATTGACGTGTGTGCAGCATCATCACCACCTCTTCGTCCAGCC
CCTCCTGCTCCAGCTTGCACTCAAACGGCCGGAGTGAGGAGCAGGTGGAG
CTGGGGGGAGGGATCGGGGGCCGAAGGGGGGGAGGAGGACGGGGAGGGAG
AGAACGAGACGAGTGGTGCCATCCCTGTCTCGTCGTCATCACTACCCCAA
GGCGCAAAGACAAAGAGGTGGGCAGCAGTGACCCTCCCTCACACGATGAA
GATGAGTGAATTGATGCTTTTGTTGTGTCAGTATTTGAAGGACAAGACTT
TGGAGCACTATGTTTATGTGCACACGCAGCGCAAGTCCATGCGCTTCCTA
CGCCTCAACCTCCCCAACGGCCACCTCATCATCCTGGTGGACTTCGCCAT
GATTTTCTCGGCCTTCTTCATGGAGCAAGCAAAAGACGCCTTCATGTCCT
CTGCTCAGACGACCGTGGTGTGGCGGCACGTGAATTTGGGAACGGGCATG
TATGTGGACAAGGTGTGGGTCGATGACACGAAGGTCGTTCAAGAGCGGCA
CATCTTTGCGTCGGCAAGCCCTAGGCACGACATCGAATTCGTGCAGGTCA
GCCTAAATCATCTCCTTGCCTTCGACATGACTTATCTGGACCCGTTTCGG
TATACGATCATGTTGCCTTGCCGAGACCAAAGAGGGACGCGACGCACTTG
CTTCCCGCTGTCGGTGGTAAATGTAAGGGGCATTTGACTTGATGCTCGCC
AAGAGTCCCATTTTTTGTGTTTCTTGTACTTAGGAAGTTTCTCTGTACCT
TTGTGTATAGGAAAGAGAAAAGGGAGGCCCAGGTGTATGTGAGTACAACG
CCAACCTCCCAGCAGAGCGAGGCGGCGGCCAAGAAGGACGTAAGAAATGT
CACAAATAAACAAATAATGTTCATAGAAAGGAATATCTGTTGACTCACAA
GGGGGCTGCCTTGAAGCGTCACAGCAGTCTGCTAGGGATGGTATTGGCGA
AGGAGGAATTCCAATATAGGTATCAGCTTACGTAAGAAATTCTCCAAATT
ATATCACAGTCCACATGATTACACTTTAAACAATTCGATGAGAAAAACTT
CACTTTTGTCACTTCAAAAAAAAAGATCGCCTGCTAAAGCTTTGTACAAG
GCCTCGGGAAACAAGTACACGTAATGACATTAACGTTTCTCTGTAGTTCC
TACCACTTTTTATATATTAAGAACTATGAAGCCGTAAGCTTGAATACCAG
CAAGCTCTAAAACCACCAATATGAATAATAAGTCAAGAGACGAAATAAAG
CTACATTAAATGGAGCCCCTTCTTTCATCACTCCTCATGCAAAGCCTGCA
GAAAATTTCAAAAGAGTATGACCAGCCATCATGTTTGAAAGATAAATTGC
TAGGCTTATCTCCATAAGACCCAGCAAAAAGCCGATGATATAGCCGTACT
TACAAAAAAATATTATGAAAATTTGTGCCGGATATACTCACTTTGATGAT
CGCTGTATAAGCCCGTGCCGGCGATACTCAGTTTGATGATCGCTGTATAA
GCCCCCGAAAAAAATTACAATGGTATGTATGCCACCAAGGTTTAAAAAAA
AAGAATAATATACGTTTAAGATTCGACGACCAAGGAAAGGATAAAACCAA
GTGTGATATAAAAATAAAAAGGTACGAG

Coding sequence (CDS) from alignment at scaffold_128:14227..16404+

>mRNA_12215 ID=mRNA_12215|Name=jgi.p|Nanoce1779_2|616986|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_128:14227..16404+ (Nannochloropsis oceanica)
ATGAAGATGAGTGAATTGATGCTTTTGTTGTGTCAGTATTTGAAGGACAA
GACTTTGGAGCACTATGTTTATGTGCACACGCAGCGCAAGTCCATGCGCT
TCCTACGCCTCAACCTCCCCAACGGCCACCTCATCATCCTGGTGGACTTC
GCCATGATTTTCTCGGCCTTCTTCATGGAGCAAGCAAAAGACGCCTTCAT
GTCCTCTGCTCAGACGACCGTGGTGTGGCGGCACGTGAATTTGGGAACGG
GCATGTATGTGGACAAGGTGTGGGTCGATGACACGAAGGTCGTTCAAGAG
CGGCACATCTTTGCGTCGGCAAGCCCTAGGCACGACATCGAATTCGTGCA
GGTCAGCCTAAATCATCTCCTTGCCTTCGACATGACTTATCTGGACCCGT
TTCGGTATACGATCATGTTGCCTTGCCGAGACCAAAGAGGGACGCGACGC
ACTTGCTTCCCGCTGTCGGTGGTAAATGTAAGGGGCATTTGA

Synonyms

Publications