jgi.p|Nanoce1779_2|592199, mRNA_5342 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592199
Unique NamemRNA_5342
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1461
Alignment locationscaffold_13:205064..206754 +

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Properties
Property NameValue
TranscriptId592285
TrackFilteredModels2
ProteinId592199
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:205064..206754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592199gene_5342Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592199mRNA_5342-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5342CDS_5342Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5342 ID=mRNA_5342|Name=jgi.p|Nanoce1779_2|592199|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
ACGTTTGGCAGCTTTCCATCGTGTGACGGCAGGCCAAGGACCATGTATTT
CTCGACCCAATGTCCATTTTACGCCCTACTTTCTCCCCATTACTTCTCAT
GTCTGCAATTACATAGGTGGCTCCACGAATAGCCGCGGATTGTGGCCTGA
TTTTCCCATCAACGTGTGAGAGAGGGCTTGACGGTAGACTTTCGGAGCAC
CCCTCACTTAAATACACGACCTCTGCCACACGCACGAGCGCACACTCAGG
AGCAACTAATCTCCACGAGCGATCAGCATGGCGACGGGTACGCCCACCAA
TAAGACTGCCCTGAAAAAGGGCTTTGGGCTCATGGATTGGGTCAAGCTTA
CGACTTCCACCTCGGACTTGTCCGGAATGCTGCGCATGGGGGGCATGCGA
GGGTATCGAATGGACGAAGTTGCCAAGCACACAAGTGCAGGGGACGCTTG
GGCTGTGTTTGGTGGCAAGGTTTACAACTTGACGCCTTACCTGCCTTATC
ACCCGGGGGGGGCTGGCATTGTGGTCAAGGCGGCGGGTACAGACTGCACG
GCGTTATTTAATAAGCACCATCCGTGGGTCAACTTTGAGGGTTTGGCGGG
GAAATTGATGGTTGGGTATCTGATAGAAGAAGGAGGTGCTAGCAATGGAT
CAGCAGCATCGGCAGCATCAGCACAAACAGTGACAGCGACGGCTTCGTCA
GCAAGTGCAAAAGGACGGATAGAAACTGATCCACCGTCAACAATAGCAAC
AAAAGATTGCAAATCACAGCCAGCCTTGTCCGTGTTTGCCATGGACTCTC
CTTCACTCCCTCCTCAGAGAATAGTAGTCTCGGCGGTTTTTGGCACTGGT
GAAGAGTCAGAGGAAGAGGGGGTAGAGGAGCAGGAGGTAGGACGGGGAGA
GGGACGCTGACGACGGGTTAGAGGATGACTGTGAATTGAACCAATCTGAC
TTAATATGTGCGGATGTGAGAGAAGCGAGAAGAATGAGAAAGAAGGGATG
AGGGATAAAGGAAGGATTTAGAGGTATGATAGCTGCTGCCTCAAGAAAAT
GCATTTCTTTTGTGCAGTTGGGGGGTTTATCGTAGGATGTCTATGGACGT
CTTCATTTGCATGCTTTTTGTGTACATATATATGTTGCCAATAATGTGGG
TGGGTAAGGATGTAGAAAGGAGGCTGGAAATGGTCGTCGCTTTCTCAAGT
TCTCACAAGAATGGAAACAGGTGAAGGAGAAAAAGGAGGAGAAAATGTGA
AAGCGTCAATTGTCAACAAACATCCAATACTAGTCCGATCTGAATAAGAA
AAAATACCAATAATCAAGGGACTCAATCAAAAAACCAACGACACAGGTGG
GGAAACCAGGCCGGTCCTATCTGTTCAATGAAATGGTGCAGGTTACTCAG
TCATCTACTCTCGTAAGACCCTTTCGATTGTTAAGTTTTTGCAACCGTTG
TTTAACATATT
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protein sequence of jgi.p|Nanoce1779_2|592199

>mRNA_5342-protein ID=mRNA_5342-protein|Name=jgi.p|Nanoce1779_2|592199|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MATGTPTNKTALKKGFGLMDWVKLTTSTSDLSGMLRMGGMRGYRMDEVAK
HTSAGDAWAVFGGKVYNLTPYLPYHPGGAGIVVKAAGTDCTALFNKHHPW
VNFEGLAGKLMVGYLIEEGGASNGSAASAASAQTVTATASSASAKGRIET
DPPSTIATKDCKSQPALSVFAMDSPSLPPQRIVVSAVFGTGEESEEEGVE
EQEVGRGEGR*
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mRNA from alignment at scaffold_13:205064..206754+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5342 ID=mRNA_5342|Name=jgi.p|Nanoce1779_2|592199|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp|location=Sequence derived from alignment at scaffold_13:205064..206754+ (Nannochloropsis oceanica)
ACGTTTGGCAGCTTTCCATCGTGTGACGGCAGGCCAAGGACCATGTATTT
CTCGACCCAATGTCCATTTTACGCCCTACTTTCTCCCCATTACTTCTCAT
GTCTGCAATTACATAGGTGGCTCCACGAATAGCCGCGGATTGTGGCCTGA
TTTTCCCATCAACGTGTGAGAGAGGGCTTGACGGTAGACTTTCGGAGCAC
CCCTCACTTAAATACACGACCTCTGCCACACGCACGAGCGCACACTCAGG
AGCAACTAATCTCCACGAGCGATCAGCATGGCGACGGGTACGCCCACCAA
TAAGACTGCCCTGAAAAAGGGCTTTGGGCTCATGGTACGTGGGACCACAC
GAGCTCACGGCCCTGTGGTGCGAATGCCACGTACTCACTCCTTTCACGCC
CCCGTGTCTGCATCATCCACTGCACTGTAGGATTGGGTCAAGCTTACGAC
TTCCACCTCGGACTTGTCCGGAATGCTGCGCATGGGGGGCATGCGAGGGT
ATCGAATGGACGAAGTTGCCAAGCACACAAGTGCAGGGGACGCTTGGGCT
GTGTTTGGTGGCAAGGTTTACAACTTGACGCCTTACCTGCCTTATCACCC
GGGGGGGGCTGGCATTGTGGTCAAGGCGGCGGGTACAGACTGCACGGCGT
TATTTAATAAGCACCATCCGTGGGTCAACTTTGAGGGTTTGGCGGGGGTA
CGTTTATTTTTGTTTTTGGGAGGGGAGAGTAGGAGGGCGGGAGGGAGGTT
CGGATTATGAGAGTAAATGTCCTTCTCTGTGTTTTTCTTGGTATTTATAA
TTATGCTTACGGCGCTATTATCATTATACAGAAATTGATGGTTGGGTATC
TGATAGAAGAAGGAGGTGCTAGCAATGGATCAGCAGCATCGGCAGCATCA
GCACAAACAGTGACAGCGACGGCTTCGTCAGCAAGTGCAAAAGGACGGAT
AGAAACTGATCCACCGTCAACAATAGCAACAAAAGATTGCAAATCACAGC
CAGCCTTGTCCGTGTTTGCCATGGACTCTCCTTCACTCCCTCCTCAGAGA
ATAGTAGTCTCGGCGGTTTTTGGCACTGGTGAAGAGTCAGAGGAAGAGGG
GGTAGAGGAGCAGGAGGTAGGACGGGGAGAGGGACGCTGACGACGGGTTA
GAGGATGACTGTGAATTGAACCAATCTGACTTAATATGTGCGGATGTGAG
AGAAGCGAGAAGAATGAGAAAGAAGGGATGAGGGATAAAGGAAGGATTTA
GAGGTATGATAGCTGCTGCCTCAAGAAAATGCATTTCTTTTGTGCAGTTG
GGGGGTTTATCGTAGGATGTCTATGGACGTCTTCATTTGCATGCTTTTTG
TGTACATATATATGTTGCCAATAATGTGGGTGGGTAAGGATGTAGAAAGG
AGGCTGGAAATGGTCGTCGCTTTCTCAAGTTCTCACAAGAATGGAAACAG
GTGAAGGAGAAAAAGGAGGAGAAAATGTGAAAGCGTCAATTGTCAACAAA
CATCCAATACTAGTCCGATCTGAATAAGAAAAAATACCAATAATCAAGGG
ACTCAATCAAAAAACCAACGACACAGGTGGGGAAACCAGGCCGGTCCTAT
CTGTTCAATGAAATGGTGCAGGTTACTCAGTCATCTACTCTCGTAAGACC
CTTTCGATTGTTAAGTTTTTGCAACCGTTGTTTAACATATT
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Coding sequence (CDS) from alignment at scaffold_13:205064..206754+

>mRNA_5342 ID=mRNA_5342|Name=jgi.p|Nanoce1779_2|592199|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_13:205064..206754+ (Nannochloropsis oceanica)
ATGGCGACGGGTACGCCCACCAATAAGACTGCCCTGAAAAAGGGCTTTGG
GCTCATGGATTGGGTCAAGCTTACGACTTCCACCTCGGACTTGTCCGGAA
TGCTGCGCATGGGGGGCATGCGAGGGTATCGAATGGACGAAGTTGCCAAG
CACACAAGTGCAGGGGACGCTTGGGCTGTGTTTGGTGGCAAGGTTTACAA
CTTGACGCCTTACCTGCCTTATCACCCGGGGGGGGCTGGCATTGTGGTCA
AGGCGGCGGGTACAGACTGCACGGCGTTATTTAATAAGCACCATCCGTGG
GTCAACTTTGAGGGTTTGGCGGGGAAATTGATGGTTGGGTATCTGATAGA
AGAAGGAGGTGCTAGCAATGGATCAGCAGCATCGGCAGCATCAGCACAAA
CAGTGACAGCGACGGCTTCGTCAGCAAGTGCAAAAGGACGGATAGAAACT
GATCCACCGTCAACAATAGCAACAAAAGATTGCAAATCACAGCCAGCCTT
GTCCGTGTTTGCCATGGACTCTCCTTCACTCCCTCCTCAGAGAATAGTAG
TCTCGGCGGTTTTTGGCACTGGTGAAGAGTCAGAGGAAGAGGGGGTAGAG
GAGCAGGAGGTAGGACGGGGAGAGGGACGCTGAATGGCGACGGGTACGCC
CACCAATAAGACTGCCCTGAAAAAGGGCTTTGGGCTCATGGATTGGGTCA
AGCTTACGACTTCCACCTCGGACTTGTCCGGAATGCTGCGCATGGGGGGC
ATGCGAGGGTATCGAATGGACGAAGTTGCCAAGCACACAAGTGCAGGGGA
CGCTTGGGCTGTGTTTGGTGGCAAGGTTTACAACTTGACGCCTTACCTGC
CTTATCACCCGGGGGGGGCTGGCATTGTGGTCAAGGCGGCGGGTACAGAC
TGCACGGCGTTATTTAATAAGCACCATCCGTGGGTCAACTTTGAGGGTTT
GGCGGGGAAATTGATGGTTGGGTATCTGATAGAAGAAGGAGGTGCTAGCA
ATGGATCAGCAGCATCGGCAGCATCAGCACAAACAGTGACAGCGACGGCT
TCGTCAGCAAGTGCAAAAGGACGGATAGAAACTGATCCACCGTCAACAAT
AGCAACAAAAGATTGCAAATCACAGCCAGCCTTGTCCGTGTTTGCCATGG
ACTCTCCTTCACTCCCTCCTCAGAGAATAGTAGTCTCGGCGGTTTTTGGC
ACTGGTGAAGAGTCAGAGGAAGAGGGGGTAGAGGAGCAGGAGGTAGGACG
GGGAGAGGGACGCTGAATGGCGACGGGTACGCCCACCAATAAGACTGCCC
TGAAAAAGGGCTTTGGGCTCATGGATTGGGTCAAGCTTACGACTTCCACC
TCGGACTTGTCCGGAATGCTGCGCATGGGGGGCATGCGAGGGTATCGAAT
GGACGAAGTTGCCAAGCACACAAGTGCAGGGGACGCTTGGGCTGTGTTTG
GTGGCAAGGTTTACAACTTGACGCCTTACCTGCCTTATCACCCGGGGGGG
GCTGGCATTGTGGTCAAGGCGGCGGGTACAGACTGCACGGCGTTATTTAA
TAAGCACCATCCGTGGGTCAACTTTGAGGGTTTGGCGGGGAAATTGATGG
TTGGGTATCTGATAGAAGAAGGAGGTGCTAGCAATGGATCAGCAGCATCG
GCAGCATCAGCACAAACAGTGACAGCGACGGCTTCGTCAGCAAGTGCAAA
AGGACGGATAGAAACTGATCCACCGTCAACAATAGCAACAAAAGATTGCA
AATCACAGCCAGCCTTGTCCGTGTTTGCCATGGACTCTCCTTCACTCCCT
CCTCAGAGAATAGTAGTCTCGGCGGTTTTTGGCACTGGTGAAGAGTCAGA
GGAAGAGGGGGTAGAGGAGCAGGAGGTAGGACGGGGAGAGGGACGCTGA
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Synonyms
Publications