jgi.p|Nanoce1779_2|644315, mRNA_11831 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|644315
Unique Name	mRNA_11831
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	771
Alignment location	scaffold_138:21548..22966 +

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Properties


Property Name	Value
TranscriptId	644401
Track	FilteredModels2
ProteinId	644315

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_138	supercontig	scaffold_138:21548..22966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|644315	gene_11831	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|644315	mRNA_11831-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11831	CDS_11831	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_138:21548..22966+
coding sequence from alignment at scaffold_138:21548..22966+

mRNA sequence

>mRNA_11831 ID=mRNA_11831|Name=jgi.p|Nanoce1779_2|644315|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
ATGCAAGTCCATGCATTACACTTGAGAGCCTTGCAAGATAATGTTCGACG
GCCCTGGCAAGGGCTGTGCCAACAGGAGCATCCCCGTCGGCATGTGAGAC
TCAAAAAAGAATGGAACCAGATCGTTACTACGTACCATCGGCGGCGACAG
GAGCTCGATGCTGACAAGCGCTTGCTCAGCCAGGCCGTCCAAGAAGAAGC
CTCAGCACTTGCACGTAAATTTGTAGCCCAGGCTGGGATGGTGTTTATGG
ATCTTGCAAAGCGTGAACGCAGCGCCACTTCCGCGGCCTTGTTGATGGTG
GCAGCTGCAGAAAAGGCGCACTACCAGGCACGGATCTTGGCTGCAGAGAA
AGTAGAAGTAGCAGCAAGAAGAGCAGGACAAGAAGAGGGAGTGGTGAAAG
GAGTCGACGCGTGTGTGGTAAGACACAAGCAACCGGAGCTGACGCATAGA
TACTATGCGGCGCTGATGGTGTTGGATCAAGAGTGGGATATAGACAGCAA
CACGAACAAGGAGAAGAACTTTGGGAGGATGGAAGGGACAGAGAGGAGTA
CGGCTAGCACATGCTTAGAGCCGGAATTGTATGACAAGTCTCAAGACCCA
GAGCAACAACAACCAAAACGAAAGTACTTGATTGCATGCATCCGCAGCCA
CCCGTGGTGGCAATCCCGGGAAGTGTGGAAAGAGGCCCTAAGGCTGAATG
TAGACCACGAACTGAGTCAGTGCCAGCAGCAAGGGCCGTGGGAGCTGTCT
TCCGAGGCGTTGCGAGAGTAA

protein sequence of jgi.p|Nanoce1779_2|644315

>mRNA_11831-protein ID=mRNA_11831-protein|Name=jgi.p|Nanoce1779_2|644315|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MQVHALHLRALQDNVRRPWQGLCQQEHPRRHVRLKKEWNQIVTTYHRRRQ
ELDADKRLLSQAVQEEASALARKFVAQAGMVFMDLAKRERSATSAALLMV
AAAEKAHYQARILAAEKVEVAARRAGQEEGVVKGVDACVVRHKQPELTHR
YYAALMVLDQEWDIDSNTNKEKNFGRMEGTERSTASTCLEPELYDKSQDP
EQQQPKRKYLIACIRSHPWWQSREVWKEALRLNVDHELSQCQQQGPWELS
SEALRE*

mRNA from alignment at scaffold_138:21548..22966+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11831 ID=mRNA_11831|Name=jgi.p|Nanoce1779_2|644315|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at scaffold_138:21548..22966+ (Nannochloropsis oceanica)
ATGCAAGTCCATGCATTACACTTGAGAGCCTTGCAAGATAATGTTCGACG
GCCCTGGCAAGGGCTGTGCCAACAGGAGCATCCCCGTCGGCATGTGAGAC
TCAAAAAAGAATGGAACCAGATCGTTACTACGTACCATCGGCGGCGACAG
GAGCTCGATGCTGACAAGCGCTTGCTCAGCCAGGCCGTCCAAGAAGAAGC
CTCAGCACTTGCACGTACGTTTGGCACTGCCTCGACGAGGACTTTTGAAG
GACGTGAGCGGCGTTGACAAGAATGAAGGCACGTAACGGGTGCAATTGAC
TACTGTACGAGAAGAAGCTAGATGAAAGACAAGGCTGACCAAAGAACGTC
TTGTCAAAGCCATATTAGCGAGGTAAATTTGTAGCCCAGGCTGGGATGGT
GTTTATGGATCTTGCAAAGCGTGAACGCAGCGCCACTTCCGCGGCCTTGT
TGATGGTGGCAGCTGCAGAAAAGGCGCACTACCAGGCACGGATCTTGGCT
GCAGAGAAAGTAGAAGTAGCAGCAAGAAGAGCAGGACAAGAAGAGGGAGT
GGTGAAAGGAGTCGACGCGTGTGTGGTAAGACACAAGCAACCGGAGCTGA
CGCATAGATACTATGCGGCGCTGATGGTGTTGGATCAAGAGTGGGATATA
GACAGCAACACGAACAAGGAGAAGAACTTTGGGAGGATGGAAGGGACAGA
GAGGAGGTAAACGAAGAGATGAGGGAAATGGATGCATTTCTGGCGGATCT
TTGGGGGCCCGCCGCCATACGTCACGACAAGAATGTGGAGGAGCATGCCA
GAGCTTTGGACAGCAGAAGAGACCGTGGGACAGCGATACCACTTCTCTTT
CCTCTCTCCTTCCTACTTCCACGTCATTCCTATCTCTCATCGATACCCCC
TGTGGCCTTGCCTACTTTTTGCGGCAGCTAAACGCTCGTCGTGGCGGCAG
TACGGCTAGCACATGCTTAGAGCCGGAATTGTATGACAAGGTAGGTAGGT
GCCTGTTTGACCATGATCTTGGATAGATATCAGGCCTGGAACGACGTCCG
CGCGGCGTAGCAGGCCTTGTTCATGGCAAACACCTTCTTCCGTCTTTATC
CGTCGGAGATCTTGGACAGGGGGGGGGCACATTATCACCGGCACCACTGT
AGGGTAGCACGGCCGCAGGTACAAGTATGTCTGGTGCCTCAGTGCCTTTA
CCCTTGACCCGAAAACCTGCGACTCGACCAACACAGTCTCAAGACCCAGA
GCAACAACAACCAAAACGAAAGTACTTGATTGCATGCATCCGCAGCCACC
CGTGGTGGCAATCCCGGGAAGTGTGGAAAGAGGCCCTAAGGCTGAATGTA
GACCACGAACTGAGTCAGTGCCAGCAGCAAGGGCCGTGGGAGCTGTCTTC
CGAGGCGTTGCGAGAGTAA

Coding sequence (CDS) from alignment at scaffold_138:21548..22966+

>mRNA_11831 ID=mRNA_11831|Name=jgi.p|Nanoce1779_2|644315|organism=Nannochloropsis oceanica|type=CDS|length=3084bp|location=Sequence derived from alignment at scaffold_138:21548..22966+ (Nannochloropsis oceanica)
ATGCAAGTCCATGCATTACACTTGAGAGCCTTGCAAGATAATGTTCGACG
GCCCTGGCAAGGGCTGTGCCAACAGGAGCATCCCCGTCGGCATGTGAGAC
TCAAAAAAGAATGGAACCAGATCGTTACTACGTACCATCGGCGGCGACAG
GAGCTCGATGCTGACAAGCGCTTGCTCAGCCAGGCCGTCCAAGAAGAAGC
CTCAGCACTTGCACGTAAATTTGTAGCCCAGGCTGGGATGGTGTTTATGG
ATCTTGCAAAGCGTGAACGCAGCGCCACTTCCGCGGCCTTGTTGATGGTG
GCAGCTGCAGAAAAGGCGCACTACCAGGCACGGATCTTGGCTGCAGAGAA
AGTAGAAGTAGCAGCAAGAAGAGCAGGACAAGAAGAGGGAGTGGTGAAAG
GAGTCGACGCGTGTGTGGTAAGACACAAGCAACCGGAGCTGACGCATAGA
TACTATGCGGCGCTGATGGTGTTGGATCAAGAGTGGGATATAGACAGCAA
CACGAACAAGGAGAAGAACTTTGGGAGGATGGAAGGGACAGAGAGGAGTA
CGGCTAGCACATGCTTAGAGCCGGAATTGTATGACAAGTCTCAAGACCCA
GAGCAACAACAACCAAAACGAAAGTACTTGATTGCATGCATCCGCAGCCA
CCCGTGGTGGCAATCCCGGGAAGTGTGGAAAGAGGCCCTAAGGCTGAATG
TAGACCACGAACTGAGTCAGTGCCAGCAGCAAGGGCCGTGGGAGCTGTCT
TCCGAGGCGTTGCGAGAGTAAATGCAAGTCCATGCATTACACTTGAGAGC
CTTGCAAGATAATGTTCGACGGCCCTGGCAAGGGCTGTGCCAACAGGAGC
ATCCCCGTCGGCATGTGAGACTCAAAAAAGAATGGAACCAGATCGTTACT
ACGTACCATCGGCGGCGACAGGAGCTCGATGCTGACAAGCGCTTGCTCAG
CCAGGCCGTCCAAGAAGAAGCCTCAGCACTTGCACGTAAATTTGTAGCCC
AGGCTGGGATGGTGTTTATGGATCTTGCAAAGCGTGAACGCAGCGCCACT
TCCGCGGCCTTGTTGATGGTGGCAGCTGCAGAAAAGGCGCACTACCAGGC
ACGGATCTTGGCTGCAGAGAAAGTAGAAGTAGCAGCAAGAAGAGCAGGAC
AAGAAGAGGGAGTGGTGAAAGGAGTCGACGCGTGTGTGGTAAGACACAAG
CAACCGGAGCTGACGCATAGATACTATGCGGCGCTGATGGTGTTGGATCA
AGAGTGGGATATAGACAGCAACACGAACAAGGAGAAGAACTTTGGGAGGA
TGGAAGGGACAGAGAGGAGTACGGCTAGCACATGCTTAGAGCCGGAATTG
TATGACAAGTCTCAAGACCCAGAGCAACAACAACCAAAACGAAAGTACTT
GATTGCATGCATCCGCAGCCACCCGTGGTGGCAATCCCGGGAAGTGTGGA
AAGAGGCCCTAAGGCTGAATGTAGACCACGAACTGAGTCAGTGCCAGCAG
CAAGGGCCGTGGGAGCTGTCTTCCGAGGCGTTGCGAGAGTAAATGCAAGT
CCATGCATTACACTTGAGAGCCTTGCAAGATAATGTTCGACGGCCCTGGC
AAGGGCTGTGCCAACAGGAGCATCCCCGTCGGCATGTGAGACTCAAAAAA
GAATGGAACCAGATCGTTACTACGTACCATCGGCGGCGACAGGAGCTCGA
TGCTGACAAGCGCTTGCTCAGCCAGGCCGTCCAAGAAGAAGCCTCAGCAC
TTGCACGTAAATTTGTAGCCCAGGCTGGGATGGTGTTTATGGATCTTGCA
AAGCGTGAACGCAGCGCCACTTCCGCGGCCTTGTTGATGGTGGCAGCTGC
AGAAAAGGCGCACTACCAGGCACGGATCTTGGCTGCAGAGAAAGTAGAAG
TAGCAGCAAGAAGAGCAGGACAAGAAGAGGGAGTGGTGAAAGGAGTCGAC
GCGTGTGTGGTAAGACACAAGCAACCGGAGCTGACGCATAGATACTATGC
GGCGCTGATGGTGTTGGATCAAGAGTGGGATATAGACAGCAACACGAACA
AGGAGAAGAACTTTGGGAGGATGGAAGGGACAGAGAGGAGTACGGCTAGC
ACATGCTTAGAGCCGGAATTGTATGACAAGTCTCAAGACCCAGAGCAACA
ACAACCAAAACGAAAGTACTTGATTGCATGCATCCGCAGCCACCCGTGGT
GGCAATCCCGGGAAGTGTGGAAAGAGGCCCTAAGGCTGAATGTAGACCAC
GAACTGAGTCAGTGCCAGCAGCAAGGGCCGTGGGAGCTGTCTTCCGAGGC
GTTGCGAGAGTAAATGCAAGTCCATGCATTACACTTGAGAGCCTTGCAAG
ATAATGTTCGACGGCCCTGGCAAGGGCTGTGCCAACAGGAGCATCCCCGT
CGGCATGTGAGACTCAAAAAAGAATGGAACCAGATCGTTACTACGTACCA
TCGGCGGCGACAGGAGCTCGATGCTGACAAGCGCTTGCTCAGCCAGGCCG
TCCAAGAAGAAGCCTCAGCACTTGCACGTAAATTTGTAGCCCAGGCTGGG
ATGGTGTTTATGGATCTTGCAAAGCGTGAACGCAGCGCCACTTCCGCGGC
CTTGTTGATGGTGGCAGCTGCAGAAAAGGCGCACTACCAGGCACGGATCT
TGGCTGCAGAGAAAGTAGAAGTAGCAGCAAGAAGAGCAGGACAAGAAGAG
GGAGTGGTGAAAGGAGTCGACGCGTGTGTGGTAAGACACAAGCAACCGGA
GCTGACGCATAGATACTATGCGGCGCTGATGGTGTTGGATCAAGAGTGGG
ATATAGACAGCAACACGAACAAGGAGAAGAACTTTGGGAGGATGGAAGGG
ACAGAGAGGAGTACGGCTAGCACATGCTTAGAGCCGGAATTGTATGACAA
GTCTCAAGACCCAGAGCAACAACAACCAAAACGAAAGTACTTGATTGCAT
GCATCCGCAGCCACCCGTGGTGGCAATCCCGGGAAGTGTGGAAAGAGGCC
CTAAGGCTGAATGTAGACCACGAACTGAGTCAGTGCCAGCAGCAAGGGCC
GTGGGAGCTGTCTTCCGAGGCGTTGCGAGAGTAA

Synonyms

Publications