jgi.p|Nanoce1779_2|598216, mRNA_7314 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598216
Unique Name	mRNA_7314
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1772
Alignment location	scaffold_19:191778..193758 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598302
Track	FilteredModels2
ProteinId	598216

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:191778..193758 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598216	gene_7314	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598216	mRNA_7314-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7314	CDS_7314	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:191778..193758-
coding sequence from alignment at scaffold_19:191778..193758-

mRNA sequence

>mRNA_7314 ID=mRNA_7314|Name=jgi.p|Nanoce1779_2|598216|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp
CAGGCATCCATCCCCTACATCCATACAGGTGCGAGACCATGGAGGGCAGA
TCACAAAAGAGAATAGGACGCAGTGCCTGGTCACTCCTCCTCCTCGTCTC
CGTCTTCGGCCTGATGGCACCGTGTCTGGGTTTCCGACTCCCCTTCACCC
CGTCAGCCTCCCCCTCCCCCCCCTCCTCCTCATCCTTGCCCCCGTGTCGC
CCCGCCAGAGCAGCCGCAGCTACGGCCACTTCTTCCACAACAAATATGCA
AAAAAGAGCGCGAGACCAAGATAGATCTTCGGATTGGTGGAAGGACCCCC
GCGCAACGCAACGCCTCCTAGATCCCGCGTCAGCACCGCTTAGCGCTGCC
GAGCGCGTCAAGCCAGCAGCCGCAGCATCATCTTGCGCTTCCTCTTCTTC
GTCGTCGTCGTCGTCATCGTTTGACCGTTTCCTGTTCTCGGCCTCCTACT
CCATGCGGAATTTCAAGCGGCTGGCCTTCTCGGTTGCCCTGCCCGTTCTC
CTCTCTATCAATGGGGACAGCCTCTTTGCCGGCGGCCTGCCCCATCCCCC
GGTCGCCGCGGCAGTCGACAGCGTCAAGGTGGGCAAGTGTCTGCTGCAGA
ATTGCCAGTTGGAGTTGGCACGATGTATCTTGGACCCCAAGTGCTTGGCA
AATGTGATCTGCTTGAATACGTGCAACAACAAGGCGGACGAGGTAGGCTG
CCAGATTGGGTGTGGCGATCTTTTCGAGAACGAGGTGGTGGGGCAATTTA
ATGCCTGCGCGCTAAGCAAGAAGCAGTGCGTACCTCGCAAGGAGGATGAC
GGGTCTTATCCCGTCCCGGCAGACTCGGCGTTGGTCCCGTCGTTTGACAT
CAATTCCTTCAAGGGCAAGTGGTACATCTCTGCGGGCCTGAACCCGCTCT
TTGACATCTTCGACTGCCAGGTCCACTTCTTCACCGTGCAGGGCGATAAG
CTCTATGGCAAGCTGAACTGGCGGATAACGGAGCCGGACGGGGAGTTTTT
CACCCGTGACACGGTACAGCGGTTCGTGCAGGACCCGAAGTTCCCGGGCA
AGCTTTACAACCACGACAACGAGTACCTGCACTACCAGGACGATTGGTAT
ATCCTGGACCACGAGCCTGACCAGTTCATTGCCATCTTCTACCGGGGCCA
GAATGACGCTTGGACGGGTTACGGCGGGGGGGTGGTATACACACGGGGAC
CCTCCGTCCCTCCCAAGTACAAGGAGCGGATCTCGGCGGCCTTCGCCAAG
GCTGGAGTGGACTATGCGAAATTTCAGGACGTGGACAATACGTGTAGCGA
GCAGAGTAAGAACCCGACGGTCTTGCGGGCCGAATTTGCGAGAAGACTAT
TTTTGACTGAGGAGCAGCAGTTGCAGGAGGCGCTGACGACGGCCAGAATC
ACGGCGGGAAATGCCATTCTGATGGAGGAGAAGGAGGCACAGGCGGCAGT
TAAAGAGCTCGAGCGGGCTATCAATAACTTCGAGAGAGGGGTGGAGGAGG
AGGTGATAAAGGATGTGAAAGTCCTCGAGGGTGAGATAAAGGAGGTAGAG
AAGACATTCGAGAAGGTGATCGACACCAACTTGTGGAAGAAGAATAACCA
GCAGAACCTGGATTCTCTGGCCCAGAAACTGGAGGGAAGACCACTGGTGG
ATCCCCGGCCAGCGCCCAAGTAGGAAGATGGGGGGATCTTGGGGAAGGGA
GGGAGGGAGCGACGGAGGGAGCGAGGGAGGGGTGCTGGACTGAATCGTAT
GGCATTGGTCGGGAGGGGCGCT

protein sequence of jgi.p|Nanoce1779_2|598216

>mRNA_7314-protein ID=mRNA_7314-protein|Name=jgi.p|Nanoce1779_2|598216|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MEGRSQKRIGRSAWSLLLLVSVFGLMAPCLGFRLPFTPSASPSPPSSSSL
PPCRPARAAAATATSSTTNMQKRARDQDRSSDWWKDPRATQRLLDPASAP
LSAAERVKPAAAASSCASSSSSSSSSSFDRFLFSASYSMRNFKRLAFSVA
LPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDP
KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPR
KEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTV
QGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQ
DDWYILDHEPDQFIAIFYRGQNDAWTGYGGGVVYTRGPSVPPKYKERISA
AFAKAGVDYAKFQDVDNTCSEQSKNPTVLRAEFARRLFLTEEQQLQEALT
TARITAGNAILMEEKEAQAAVKELERAINNFERGVEEEVIKDVKVLEGEI
KEVEKTFEKVIDTNLWKKNNQQNLDSLAQKLEGRPLVDPRPAPK*

mRNA from alignment at scaffold_19:191778..193758-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7314 ID=mRNA_7314|Name=jgi.p|Nanoce1779_2|598216|organism=Nannochloropsis oceanica|type=mRNA|length=1981bp|location=Sequence derived from alignment at scaffold_19:191778..193758- (Nannochloropsis oceanica)
CAGGCATCCATCCCCTACATCCATACAGGTGCGAGACCATGGAGGGCAGA
TCACAAAAGAGAATAGGACGCAGTGCCTGGTCACTCCTCCTCCTCGTCTC
CGTCTTCGGCCTGATGGCACCGTGTCTGGGTTTCCGACTCCCCTTCACCC
CGTCAGCCTCCCCCTCCCCCCCCTCCTCCTCATCCTTGCCCCCGTGTCGC
CCCGCCAGAGCAGCCGCAGCTACGGCCACTTCTTCCACAACAAATATGCA
AAAAAGAGCGCGAGACCAAGATAGATCTTCGGATTGGTGGAAGGACCCCC
GCGCAACGCAACGCCTCCTAGATCCCGCGTCAGCACCGCTTAGCGCTGCC
GAGCGCGTCAAGCCAGCAGCCGCAGCATCATCTTGCGCTTCCTCTTCTTC
GTCGTCGTCGTCGTCATCGTTTGACCGTTTCCTGTTCTCGGCCTCCTACT
CCATGCGGAATTTCAAGCGGCTGGCCTTCTCGGTTGCCCTGCCCGTTCTC
CTCTCTATCAATGGGGACAGCCTCTTTGCCGGCGGCCTGCCCCATCCCCC
GGTCGCCGCGGCAGTCGACAGCGTCAAGGTGGGCAAGTGTCTGCTGCAGA
ATTGCCAGTTGGAGTTGGCACGATGTATCTTGGACCCCAAGTGCTTGGCA
AATGTGATCTGCTTGAATACGTGCAACAACAAGGCGGACGAGGTAGGCTG
CCAGATTGGGTGTGGCGATCTTTTCGAGAACGAGGTGGTGGGGCAATTTA
ATGCCTGCGCGCTAAGCAAGAAGCAGTGCGTACCTCGCAAGGAGGATGAC
GGGTCTTATCCCGTCCCGGCAGACTCGGCGTTGGTCCCGTCGTTTGACAT
CAATTCCTTCAAGGGCAAGTGGTACATCTCTGCGGGCCTGAACCCGCTCT
TTGACATCTTCGACTGCCAGGTCCACTTCTTCACCGTGCAGGGCGATAAG
CTCTATGGCAAGCTGAACTGGCGGATAACGGAGCCGGACGGGGAGTTTTT
CACCCGTGACACGGTACAGCGGTTCGTGCAGGACCCGAAGTTCCCGGGCA
AGCTTTACAACCACGACAACGAGTACCTGCACTACCAGGCAAGTTGACAC
TTTCACTACCACTGAGTTGTCTCGTGAAATATGCTCTACATTTTCAATGT
CTCTTAAAGACACTTGAATGGGACTGAGGGAGGAGGTCCGAAGGCTCATG
ACTGTGTTCTCTGTTGTCCCTCCCTCCCTCCCTCCCTGTTACCTTCCTCC
TCTCTAACACTCCCCTCCTTCCTGTCTTCCTCCCTCTCTCTCCCCAGGAC
GATTGGTATATCCTGGACCACGAGCCTGACCAGTTCATTGCCATCTTCTA
CCGGGGCCAGAATGACGCTTGGACGGGTTACGGCGGGGGGGTGGTATACA
CACGGGGACCCTCCGTCCCTCCCAAGTACAAGGAGCGGATCTCGGCGGCC
TTCGCCAAGGCTGGAGTGGACTATGCGAAATTTCAGGACGTGGACAATAC
GTGTAGCGAGCAGAGTAAGAACCCGACGGTCTTGCGGGCCGAATTTGCGA
GAAGACTATTTTTGACTGAGGAGCAGCAGTTGCAGGAGGCGCTGACGACG
GCCAGAATCACGGCGGGAAATGCCATTCTGATGGAGGAGAAGGAGGCACA
GGCGGCAGTTAAAGAGCTCGAGCGGGCTATCAATAACTTCGAGAGAGGGG
TGGAGGAGGAGGTGATAAAGGATGTGAAAGTCCTCGAGGGTGAGATAAAG
GAGGTAGAGAAGACATTCGAGAAGGTGATCGACACCAACTTGTGGAAGAA
GAATAACCAGCAGAACCTGGATTCTCTGGCCCAGAAACTGGAGGGAAGAC
CACTGGTGGATCCCCGGCCAGCGCCCAAGTAGGAAGATGGGGGGATCTTG
GGGAAGGGAGGGAGGGAGCGACGGAGGGAGCGAGGGAGGGGTGCTGGACT
GAATCGTATGGCATTGGTCGGGAGGGGCGCT

Coding sequence (CDS) from alignment at scaffold_19:191778..193758-

>mRNA_7314 ID=mRNA_7314|Name=jgi.p|Nanoce1779_2|598216|organism=Nannochloropsis oceanica|type=CDS|length=3270bp|location=Sequence derived from alignment at scaffold_19:191778..193758- (Nannochloropsis oceanica)
GACGATTGGTATATCCTGGACCACGAGCCTGACCAGTTCATTGCCATCTT
CTACCGGGGCCAGAATGACGCTTGGACGGGTTACGGCGGGGGGGTGGTAT
ACACACGGGGACCCTCCGTCCCTCCCAAGTACAAGGAGCGGATCTCGGCG
GCCTTCGCCAAGGCTGGAGTGGACTATGCGAAATTTCAGGACGTGGACAA
TACGTGTAGCGAGCAGAGTAAGAACCCGACGGTCTTGCGGGCCGAATTTG
CGAGAAGACTATTTTTGACTGAGGAGCAGCAGTTGCAGGAGGCGCTGACG
ACGGCCAGAATCACGGCGGGAAATGCCATTCTGATGGAGGAGAAGGAGGC
ACAGGCGGCAGTTAAAGAGCTCGAGCGGGCTATCAATAACTTCGAGAGAG
GGGTGGAGGAGGAGGTGATAAAGGATGTGAAAGTCCTCGAGGGTGAGATA
AAGGAGGTAGAGAAGACATTCGAGAAGGTGATCGACACCAACTTGTGGAA
GAAGAATAACCAGCAGAACCTGGATTCTCTGGCCCAGAAACTGGAGGGAA
GACCACTGGTGGATCCCCGGCCAGCGCCCAAGTAGATGGAGGGCAGATCA
CAAAAGAGAATAGGACGCAGTGCCTGGTCACTCCTCCTCCTCGTCTCCGT
CTTCGGCCTGATGGCACCGTGTCTGGGTTTCCGACTCCCCTTCACCCCGT
CAGCCTCCCCCTCCCCCCCCTCCTCCTCATCCTTGCCCCCGTGTCGCCCC
GCCAGAGCAGCCGCAGCTACGGCCACTTCTTCCACAACAAATATGCAAAA
AAGAGCGCGAGACCAAGATAGATCTTCGGATTGGTGGAAGGACCCCCGCG
CAACGCAACGCCTCCTAGATCCCGCGTCAGCACCGCTTAGCGCTGCCGAG
CGCGTCAAGCCAGCAGCCGCAGCATCATCTTGCGCTTCCTCTTCTTCGTC
GTCGTCGTCGTCATCGTTTGACCGTTTCCTGTTCTCGGCCTCCTACTCCA
TGCGGAATTTCAAGCGGCTGGCCTTCTCGGTTGCCCTGCCCGTTCTCCTC
TCTATCAATGGGGACAGCCTCTTTGCCGGCGGCCTGCCCCATCCCCCGGT
CGCCGCGGCAGTCGACAGCGTCAAGGTGGGCAAGTGTCTGCTGCAGAATT
GCCAGTTGGAGTTGGCACGATGTATCTTGGACCCCAAGTGCTTGGCAAAT
GTGATCTGCTTGAATACGTGCAACAACAAGGCGGACGAGGTAGGCTGCCA
GATTGGGTGTGGCGATCTTTTCGAGAACGAGGTGGTGGGGCAATTTAATG
CCTGCGCGCTAAGCAAGAAGCAGTGCGTACCTCGCAAGGAGGATGACGGG
TCTTATCCCGTCCCGGCAGACTCGGCGTTGGTCCCGTCGTTTGACATCAA
TTCCTTCAAGGGCAAGTGGTACATCTCTGCGGGCCTGAACCCGCTCTTTG
ACATCTTCGACTGCCAGGTCCACTTCTTCACCGTGCAGGGCGATAAGCTC
TATGGCAAGCTGAACTGGCGGATAACGGAGCCGGACGGGGAGTTTTTCAC
CCGTGACACGGTACAGCGGTTCGTGCAGGACCCGAAGTTCCCGGGCAAGC
TTTACAACCACGACAACGAGTACCTGCACTACCAGGACGATTGGTATATC
CTGGACCACGAGCCTGACCAGTTCATTGCCATCTTCTACCGGGGCCAGAA
TGACGCTTGGACGGGTTACGGCGGGGGGGTGGTATACACACGGGGACCCT
CCGTCCCTCCCAAGTACAAGGAGCGGATCTCGGCGGCCTTCGCCAAGGCT
GGAGTGGACTATGCGAAATTTCAGGACGTGGACAATACGTGTAGCGAGCA
GAGTAAGAACCCGACGGTCTTGCGGGCCGAATTTGCGAGAAGACTATTTT
TGACTGAGGAGCAGCAGTTGCAGGAGGCGCTGACGACGGCCAGAATCACG
GCGGGAAATGCCATTCTGATGGAGGAGAAGGAGGCACAGGCGGCAGTTAA
AGAGCTCGAGCGGGCTATCAATAACTTCGAGAGAGGGGTGGAGGAGGAGG
TGATAAAGGATGTGAAAGTCCTCGAGGGTGAGATAAAGGAGGTAGAGAAG
ACATTCGAGAAGGTGATCGACACCAACTTGTGGAAGAAGAATAACCAGCA
GAACCTGGATTCTCTGGCCCAGAAACTGGAGGGAAGACCACTGGTGGATC
CCCGGCCAGCGCCCAAGTAGATGGAGGGCAGATCACAAAAGAGAATAGGA
CGCAGTGCCTGGTCACTCCTCCTCCTCGTCTCCGTCTTCGGCCTGATGGC
ACCGTGTCTGGGTTTCCGACTCCCCTTCACCCCGTCAGCCTCCCCCTCCC
CCCCCTCCTCCTCATCCTTGCCCCCGTGTCGCCCCGCCAGAGCAGCCGCA
GCTACGGCCACTTCTTCCACAACAAATATGCAAAAAAGAGCGCGAGACCA
AGATAGATCTTCGGATTGGTGGAAGGACCCCCGCGCAACGCAACGCCTCC
TAGATCCCGCGTCAGCACCGCTTAGCGCTGCCGAGCGCGTCAAGCCAGCA
GCCGCAGCATCATCTTGCGCTTCCTCTTCTTCGTCGTCGTCGTCGTCATC
GTTTGACCGTTTCCTGTTCTCGGCCTCCTACTCCATGCGGAATTTCAAGC
GGCTGGCCTTCTCGGTTGCCCTGCCCGTTCTCCTCTCTATCAATGGGGAC
AGCCTCTTTGCCGGCGGCCTGCCCCATCCCCCGGTCGCCGCGGCAGTCGA
CAGCGTCAAGGTGGGCAAGTGTCTGCTGCAGAATTGCCAGTTGGAGTTGG
CACGATGTATCTTGGACCCCAAGTGCTTGGCAAATGTGATCTGCTTGAAT
ACGTGCAACAACAAGGCGGACGAGGTAGGCTGCCAGATTGGGTGTGGCGA
TCTTTTCGAGAACGAGGTGGTGGGGCAATTTAATGCCTGCGCGCTAAGCA
AGAAGCAGTGCGTACCTCGCAAGGAGGATGACGGGTCTTATCCCGTCCCG
GCAGACTCGGCGTTGGTCCCGTCGTTTGACATCAATTCCTTCAAGGGCAA
GTGGTACATCTCTGCGGGCCTGAACCCGCTCTTTGACATCTTCGACTGCC
AGGTCCACTTCTTCACCGTGCAGGGCGATAAGCTCTATGGCAAGCTGAAC
TGGCGGATAACGGAGCCGGACGGGGAGTTTTTCACCCGTGACACGGTACA
GCGGTTCGTGCAGGACCCGAAGTTCCCGGGCAAGCTTTACAACCACGACA
ACGAGTACCTGCACTACCAG

Synonyms

Publications