jgi.p|Nanoce1779_2|579222, mRNA_2136 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579222
Unique Name	mRNA_2136
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1565
Alignment location	scaffold_4:882040..883779 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579308
Track	FilteredModels2
ProteinId	579222

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:882040..883779 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579222	gene_2136	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579222	mRNA_2136-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2136	CDS_2136	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:882040..883779+
coding sequence from alignment at scaffold_4:882040..883779+

mRNA sequence

>mRNA_2136 ID=mRNA_2136|Name=jgi.p|Nanoce1779_2|579222|organism=Nannochloropsis oceanica|type=mRNA|length=1565bp
GTTCAACTCCGCGCCGTAAATAGCAGCCACTCTTACATAATTATTTAAGA
GCTCTATCGCCCGCAAAAAACTTGAATGCGCTTTAAGCTTTCAAGCGTTT
CACCCACGCGCCGCCTACCCCATTTTTACTTCACAAACGACCACACGCAC
ATGGAACTCACAGCGATCTCGATGAGAACGTGGTTGTATCTCTGAGGTCC
ACGCTCGACATACAATACACAGATACAGACATACACACACACACACAGCA
GCAGCAGCAGCAACAGCAGCAGTAGCAACAGCATGCCATTGACCCTGAAG
ATCAATGGTCCGGAGGGCAAGAGCGTCGTGCTTAAGGGCTTGGATGACGG
GCTGACCCTGCAGCAACTCAAGGACAAAGTACAGGAAACCTTCGGCGTGC
CGGGGGTGGAGCAGAAGCTTAGGGCCAGCTTCCCGCCCAAAGATGTTGTC
ATGCAAGATGAGACCGCCTTGGTGACGGCCTTGGGGATTCAGTCTGGGAG
CGCCATCACTGTTGTGCGGGAGGCGGCAAATGAGTCTGCATCTGTTGCTG
CCGCTGCTGTCACCATTACCTCGGCAGTGCGACAGCTGATGGACATGGGC
TTTCCTGCTGCCGTGGCTGCCAAGGCGCTGGAAATGGCACACAACGACGT
TGGGGGTGCATTGGAGCTTTGCATTGGTGGGGTAGTGACGGAGGAATCCT
TGGGGTCTGCGCCTGCCCCGCCTCCTTCTGTGCCGGTATCGACTCATGGG
GGGATGAGCACCGCGAATCGGGTGATGATTCGGCGGGTGGTGGATGCGGA
CAACAGTTGTTTGTTCAATGCCATTGGGTATTGCATGGAGAAGGATCGGA
AGTTGGGAACGAAGCTCAGGAGGATTATTGCTGATTGTGTGAGGAACCGC
CCGGACGTGTATACTGAGGCAACGCTGGGCAAGACGCCGAAGGAGTACTC
GGATTGGATTCAGGACCCAACGCAATGGGGAGGAGAAATCGAGCTCTTTG
TCCTCTCTCAGTACTACGGCTGCGAAATTGTGGCGGTGGAGATCAAGAGC
GTCCATGCCTATGTGTATGGGGAAGGGAAGAATTACTCAAGGCGGATCTA
TGTGTTATATGATGGGGTGCATTATGATGCCCTTGCCATGGCTGCGGGCT
CGCCCACCGCGCCTGAGTCGCTCGACATGACTCAGTTTCCTGCCGGCGAC
GAGGGGACGAAGGACGCAGCGTTGGCGGTGGCGGCCCAATTGAAGCAGGA
GAGGCAATTTGTTGATATGGCTGGGTTTACGTTGAGATGCTTAACGTGTA
TGAAGGGACTTTCAGGGCAGGAGGAGGCGAAAGCCCATGCCGCGGCGACA
CGACATCAAAATTTCGGGGAGTACTAGATGATTGTGCTAGTGATTTAAGC
AAAAGCAGAGTTTATTAATTAAAGGCATGAGATAGTACAAATGAGGTGAA
GGATGGAAATGTACAGGGGAGGTCGCAAAGGAGCCTCGAAAGTACCGGTA
GGGATATGTATGATTGAAGTATCAGCGGGTCAGCGAAGAAAATAAGATGG
ATTCGGTAACGCGCC

protein sequence of jgi.p|Nanoce1779_2|579222

>mRNA_2136-protein ID=mRNA_2136-protein|Name=jgi.p|Nanoce1779_2|579222|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MPLTLKINGPEGKSVVLKGLDDGLTLQQLKDKVQETFGVPGVEQKLRASF
PPKDVVMQDETALVTALGIQSGSAITVVREAANESASVAAAAVTITSAVR
QLMDMGFPAAVAAKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSV
PVSTHGGMSTANRVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIA
DCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIV
AVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMT
QFPAGDEGTKDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAK
AHAAATRHQNFGEY*

mRNA from alignment at scaffold_4:882040..883779+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2136 ID=mRNA_2136|Name=jgi.p|Nanoce1779_2|579222|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp|location=Sequence derived from alignment at scaffold_4:882040..883779+ (Nannochloropsis oceanica)
GTTCAACTCCGCGCCGTAAATAGCAGCCACTCTTACATAATTATTTAAGA
GCTCTATCGCCCGCAAAAAACTTGAATGCGCTTTAAGCTTTCAAGCGTTT
CACCCACGCGCCGCCTACCCCATTTTTACTTCACAAACGACCACACGCAC
ATGGAACTCACAGCGATCTCGATGAGAACGTGGTTGTATCTCTGAGGTCC
ACGCTCGACATACAATGTGAGTCCACAAATGAGAGCGCACCCACACACAG
TCAAAGCTATGCTCATTCCCATTGCATTCCACCACAGACACAGATACAGA
CATACACACACACACACAGCAGCAGCAGCAGCAACAGCAGCAGTAGCAAC
AGCATGCCATTGACCCTGAAGATCAATGGTCCGGAGGGCAAGAGCGTCGT
GCTTAAGGGCTTGGATGACGGGCTGACCCTGCAGCAACTCAAGGACAAAG
TACAGGAAACCTTCGGCGTGCCGGGGGTGGAGCAGAAGCTTAGGGCCAGC
TTCCCGCCCAAAGATGTTGTCATGCAAGATGAGACCGCCTTGGTGACGGC
CTTGGGGATTCAGTCTGGGAGCGCCATCACTGTTGTGCGGGAGGCGGCAA
ATGAGTCTGCATCTGTTGCTGCCGCTGCTGTCACCATTACCTCGGCAGTG
CGACAGCTGATGGACATGGGCTTTCCTGCTGCCGTGGCTGCCAAGGCGCT
GGAAATGGCACACAACGACGTTGGGGGTGCATTGGAGCTTTGCATTGGTG
GGGTAGTGACGGAGGAATCCTTGGGGTCTGCGCCTGCCCCGCCTCCTTCT
GTGCCGGTATCGACTCATGGGGGGATGAGCACCGCGAATCGGGTGATGAT
TCGGCGGGTGGTGGATGCGGACAACAGTTGTTTGTTCAATGCCATTGGGT
ATTGCATGGAGAAGGATCGGAAGTTGGGAACGAAGCTCAGGAGGATTATT
GCTGATTGTGTGAGGAACCGCCCGGACGTGTATACTGAGGCAACGCTGGG
CAAGACGCCGAAGGAGTACTCGGATTGGATTCAGGTAGGATGCGCGCCAG
GGAGGTAGGGAGGGGGAAAGAGGAAAGTGGATAAAGGAAGTAACGGGACT
CAATTTTACCTGTCTTTTTCCTGTCACATTTCTGTCAGGACCCAACGCAA
TGGGGAGGAGAAATCGAGCTCTTTGTCCTCTCTCAGTACTACGGCTGCGA
AATTGTGGCGGTGGAGATCAAGAGCGTCCATGCCTATGTGTATGGGGAAG
GGAAGAATTACTCAAGGCGGATCTATGTGTTATATGATGGGGTGCATTAT
GATGCCCTTGCCATGGCTGCGGGCTCGCCCACCGCGCCTGAGTCGCTCGA
CATGACTCAGTTTCCTGCCGGCGACGAGGGGACGAAGGACGCAGCGTTGG
CGGTGGCGGCCCAATTGAAGCAGGAGAGGCAATTTGTTGATATGGCTGGG
TTTACGTTGAGATGCTTAACGTGTATGAAGGGACTTTCAGGGCAGGAGGA
GGCGAAAGCCCATGCCGCGGCGACACGACATCAAAATTTCGGGGAGTACT
AGATGATTGTGCTAGTGATTTAAGCAAAAGCAGAGTTTATTAATTAAAGG
CATGAGATAGTACAAATGAGGTGAAGGATGGAAATGTACAGGGGAGGTCG
CAAAGGAGCCTCGAAAGTACCGGTAGGGATATGTATGATTGAAGTATCAG
CGGGTCAGCGAAGAAAATAAGATGGATTCGGTAACGCGCC

Coding sequence (CDS) from alignment at scaffold_4:882040..883779+

>mRNA_2136 ID=mRNA_2136|Name=jgi.p|Nanoce1779_2|579222|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_4:882040..883779+ (Nannochloropsis oceanica)
ATGCCATTGACCCTGAAGATCAATGGTCCGGAGGGCAAGAGCGTCGTGCT
TAAGGGCTTGGATGACGGGCTGACCCTGCAGCAACTCAAGGACAAAGTAC
AGGAAACCTTCGGCGTGCCGGGGGTGGAGCAGAAGCTTAGGGCCAGCTTC
CCGCCCAAAGATGTTGTCATGCAAGATGAGACCGCCTTGGTGACGGCCTT
GGGGATTCAGTCTGGGAGCGCCATCACTGTTGTGCGGGAGGCGGCAAATG
AGTCTGCATCTGTTGCTGCCGCTGCTGTCACCATTACCTCGGCAGTGCGA
CAGCTGATGGACATGGGCTTTCCTGCTGCCGTGGCTGCCAAGGCGCTGGA
AATGGCACACAACGACGTTGGGGGTGCATTGGAGCTTTGCATTGGTGGGG
TAGTGACGGAGGAATCCTTGGGGTCTGCGCCTGCCCCGCCTCCTTCTGTG
CCGGTATCGACTCATGGGGGGATGAGCACCGCGAATCGGGTGATGATTCG
GCGGGTGGTGGATGCGGACAACAGTTGTTTGTTCAATGCCATTGGGTATT
GCATGGAGAAGGATCGGAAGTTGGGAACGAAGCTCAGGAGGATTATTGCT
GATTGTGTGAGGAACCGCCCGGACGTGTATACTGAGGCAACGCTGGGCAA
GACGCCGAAGGAGTACTCGGATTGGATTCAGGACCCAACGCAATGGGGAG
GAGAAATCGAGCTCTTTGTCCTCTCTCAGTACTACGGCTGCGAAATTGTG
GCGGTGGAGATCAAGAGCGTCCATGCCTATGTGTATGGGGAAGGGAAGAA
TTACTCAAGGCGGATCTATGTGTTATATGATGGGGTGCATTATGATGCCC
TTGCCATGGCTGCGGGCTCGCCCACCGCGCCTGAGTCGCTCGACATGACT
CAGTTTCCTGCCGGCGACGAGGGGACGAAGGACGCAGCGTTGGCGGTGGC
GGCCCAATTGAAGCAGGAGAGGCAATTTGTTGATATGGCTGGGTTTACGT
TGAGATGCTTAACGTGTATGAAGGGACTTTCAGGGCAGGAGGAGGCGAAA
GCCCATGCCGCGGCGACACGACATCAAAATTTCGGGGAGTACTAGATGCC
ATTGACCCTGAAGATCAATGGTCCGGAGGGCAAGAGCGTCGTGCTTAAGG
GCTTGGATGACGGGCTGACCCTGCAGCAACTCAAGGACAAAGTACAGGAA
ACCTTCGGCGTGCCGGGGGTGGAGCAGAAGCTTAGGGCCAGCTTCCCGCC
CAAAGATGTTGTCATGCAAGATGAGACCGCCTTGGTGACGGCCTTGGGGA
TTCAGTCTGGGAGCGCCATCACTGTTGTGCGGGAGGCGGCAAATGAGTCT
GCATCTGTTGCTGCCGCTGCTGTCACCATTACCTCGGCAGTGCGACAGCT
GATGGACATGGGCTTTCCTGCTGCCGTGGCTGCCAAGGCGCTGGAAATGG
CACACAACGACGTTGGGGGTGCATTGGAGCTTTGCATTGGTGGGGTAGTG
ACGGAGGAATCCTTGGGGTCTGCGCCTGCCCCGCCTCCTTCTGTGCCGGT
ATCGACTCATGGGGGGATGAGCACCGCGAATCGGGTGATGATTCGGCGGG
TGGTGGATGCGGACAACAGTTGTTTGTTCAATGCCATTGGGTATTGCATG
GAGAAGGATCGGAAGTTGGGAACGAAGCTCAGGAGGATTATTGCTGATTG
TGTGAGGAACCGCCCGGACGTGTATACTGAGGCAACGCTGGGCAAGACGC
CGAAGGAGTACTCGGATTGGATTCAGGACCCAACGCAATGGGGAGGAGAA
ATCGAGCTCTTTGTCCTCTCTCAGTACTACGGCTGCGAAATTGTGGCGGT
GGAGATCAAGAGCGTCCATGCCTATGTGTATGGGGAAGGGAAGAATTACT
CAAGGCGGATCTATGTGTTATATGATGGGGTGCATTATGATGCCCTTGCC
ATGGCTGCGGGCTCGCCCACCGCGCCTGAGTCGCTCGACATGACTCAGTT
TCCTGCCGGCGACGAGGGGACGAAGGACGCAGCGTTGGCGGTGGCGGCCC
AATTGAAGCAGGAGAGGCAATTTGTTGATATGGCTGGGTTTACGTTGAGA
TGCTTAACGTGTATGAAGGGACTTTCAGGGCAGGAGGAGGCGAAAGCCCA
TGCCGCGGCGACACGACATCAAAATTTCGGGGAGTACTAG

Synonyms

Publications