jgi.p|Nanoce1779_2|349160, mRNA_10352 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|349160
Unique Name	mRNA_10352
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	845
Alignment location	scaffold_54:71306..73306 -

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Properties


Property Name	Value
TranscriptId	349246
Track	FilteredModels2
ProteinId	349160

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:71306..73306 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|349160	gene_10352	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|349160	mRNA_10352-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10352	CDS_10352	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:71306..73306-
coding sequence from alignment at scaffold_54:71306..73306-

mRNA sequence

>mRNA_10352 ID=mRNA_10352|Name=jgi.p|Nanoce1779_2|349160|organism=Nannochloropsis oceanica|type=mRNA|length=845bp
GAAAGCTTTGGAGTTCTATAGTGGTATTGGCGGCTGGAGCGAGGCCTTGG
AATTGGCAATGCGACAACTAGGAAGGGGAAAGGAAGACGTGCAGGTGGGT
GGGTGATGAAATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATGGACCTT
TTCGCAGTGATTGTATCTGCCTCGTTCGAGATCAACTTGATGGCCAATGA
TGTCTATGCCGCGCAAGTCAAGGATCCCCCTCGTCCACGCCCTACCGCTC
GTCTGATCGAGTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTGCG
TTGTGGATGCTCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAGAC
GGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTCTTTTCTCCATCTTT
GTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTACATCGCGTTGGAA
AATGTAGAGGGGTTTGAGACGAGCGAATGTTGCGCCCTTTTCCTCTCGGT
CCTGCGTGATAGGGGCTATGAGGTATGGCATGGCGTTCTGTCCCCTGCTC
TCTTTAGGTGGCCCAATGAACGCCCGCGGTACTACCTCCTTCCCTTGATT
CGTTTGCCCCTCTTTTTGTCATCCACAGTGTTGGTTCTGATTTTCACCTC
TTCGCCTTCCTCCCTCCCTCCCTCCCCCCCCCTCTTTCAGCTCCTCCTGC
TTCACTAAATCGTACTTCAAGTTCATCCGGGGCACTGGCTCCATTCTCTA
TGACAAGACACGAGGGAAGAAGGGGGAAGAAGAGGAGGAGATTCTGATCC
AGGTACGTTTCGAAGGGGAGGGAAGGAAGGAGGGAGTGAAGGAGG

protein sequence of jgi.p|Nanoce1779_2|349160

>mRNA_10352-protein ID=mRNA_10352-protein|Name=jgi.p|Nanoce1779_2|349160|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MKWRKAGRGFRKMDLFAVIVSASFEINLMANDVYAAQVKDPPRPRPTARL
IESLTVNDLEKQAVALWMLSPPCQPYTRNNKTEKRDKADSRSASFLHLCA
LLQSMASPPGYIALENVEGFETSECCALFLSVLRDRGYEVWHGVLSPALF
RWPNERPRYYLLPLIRLPLFLSSTVLVLIFTSSPSSLPPSPPLFQLLLLH
*

mRNA from alignment at scaffold_54:71306..73306-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10352 ID=mRNA_10352|Name=jgi.p|Nanoce1779_2|349160|organism=Nannochloropsis oceanica|type=mRNA|length=2001bp|location=Sequence derived from alignment at scaffold_54:71306..73306- (Nannochloropsis oceanica)
GAAAGCTTTGGAGTTCTATAGTGGTATTGGCGGCTGGAGCGAGGCCTTGG
AATTGGCAATGCGACAACTAGGAAGGGGAAAGGAAGACGTGCAGGTGGGT
GGGTGATGAAATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATGGACCTT
TTCGCAGTGATTGTAAGCAAATATGTCTTCTGTCTTCTGAACACCACGTT
TTGGAAGCTTGGCCAACCCACCCTTCCCTCCCTATCTCTTTCCCCTCCCC
CCCCGGGCCCTCACTTCCAGGTATCTGCCTCGTTCGAGATCAACTTGATG
GCCAATGATGTCTATGCCGCGCAAGGTCACGATAGAAGGGGGGGGAAGGG
AGGGACAGAGGAGGGGGGCAGGAGAACAAAAGGATGTCACCCTGGTTAGC
GCACAACTCCTCGCTTATCTACCCTGTATCTCCCCCCCTCCTTCCCTCCC
TTCCTCCCCCCCTCCTTCCTTTGTAGTCAAGGATCCCCCTCGTCCACGCC
CTACCGCTCGTCTGATCGAGTCCCTGACAGTCAATGATTTGGAAAAGCAG
GCCGTTGCGTTGTGGATGCTCTCTCCGCCATGCCAGCCCTACACGCGCAA
TAACAAGACGGTAGGGAGAGAGGGAGAGAGGGAGAGAGGGAGGGAGGGGA
GGAGGGAGGAAGGAAAGTAATGACGTAATTTAAAAAATCCGCTACTTTCT
AACACGTTCACATTCCCCTCATGCACCTCCATTCCCTCCACTCGTTTATT
GATACTCCTCTCATGCACCTCCTTCTCCTCCACTCGTGTGCACTTCAGGA
AAAACGAGACAAGGCCGACTCTCGCTCTGCCTCTTTTCTCCATCTTTGTG
CGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTACATCGCGTTGGAAAAT
GTAGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGGAGTGTATAG
GGTGGTACTTCAATTCTGGCCTGGATGTCATCCGTCCTCTTACCCTCCCT
GCTTCCCTCCCTCCGCTCCTCCCTCTTTTTCAGGGGTTTGAGACGAGCGA
ATGTTGCGCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGTAT
GGCATGGCGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCCCG
CGGTACTACGCCTTGGCAAGGAGGGGAAGGGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGCCGGGCGGGGACGGGGGAGGGGGAGGAGGAGGAGGGGGAG
GTGAAGGAGGGAGAAGGTCACCGGCTGCAGGTGCTGAGGAGGAGGGGACT
TTAAGGGTCTTTCCGCCTGTATGGCGGGGGAAAACCCTCCCTCCCTTCCT
TGCCTCCGCTTCCTCTTCCTCGACCTCACCCGTCCTCCCTCCCTTCTCTT
TGAAGGAGGAAGGGGAAGAGGCGGTGGAGGGGGAGGGGGAGGGGGAGACG
AGGCAGATTCGAGAGTACCTCGAGCATGACCGGGGAAGAGAGGGGTTGTG
GAGTACTTACGCCGTTCCTCCCTCCCTTCTTGCCAAGCCGTCTGCTTGGT
GCTTTGACATTGTCTCGCCCACGAGCCGGCGGTACGAGGGGGGGGGGTCC
CAGAGGGAGGGAGGGAAGGAGGGAGGGATGAGAGGGAATGTGGTGTAGCT
ACGCCATGTCTCATTTTGTCTCAATCAAACGACCCAATCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCC
TTGATTCGTTTGCCCCTCTTTTTGTCATCCACAGTGTTGGTTCTGATTTT
CACCTCTTCGCCTTCCTCCCTCCCTCCCTCCCCCCCCCTCTTTCAGCTCC
TCCTGCTTCACTAAATCGTACTTCAAGTTCATCCGGGGCACTGGCTCCAT
TCTCTATGACAAGACACGAGGGAAGAAGGGGGAAGAAGAGGAGGAGATTC
TGATCCAGGTACGTTTCGAAGGGGAGGGAAGGAAGGAGGGAGTGAAGGAG
G

Coding sequence (CDS) from alignment at scaffold_54:71306..73306-

>mRNA_10352 ID=mRNA_10352|Name=jgi.p|Nanoce1779_2|349160|organism=Nannochloropsis oceanica|type=CDS|length=3618bp|location=Sequence derived from alignment at scaffold_54:71306..73306- (Nannochloropsis oceanica)
CTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTCATCCACAGTGTTGGT
TCTGATTTTCACCTCTTCGCCTTCCTCCCTCCCTCCCTCCCCCCCCCTCT
TTCAGCTCCTCCTGCTTCACTAAGGGTTTGAGACGAGCGAATGTTGCGCC
CTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGTATGGCATGGCGT
TCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCCCGCGGTACTACG
AAAAACGAGACAAGGCCGACTCTCGCTCTGCCTCTTTTCTCCATCTTTGT
GCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTACATCGCGTTGGAAAA
TGTAGAGTCAAGGATCCCCCTCGTCCACGCCCTACCGCTCGTCTGATCGA
GTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTGCGTTGTGGATGC
TCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAGACGGTATCTGCC
TCGTTCGAGATCAACTTGATGGCCAATGATGTCTATGCCGCGCAAGATGA
AATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATGGACCTTTTCGCAGTG
ATTCTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTCATCCACAGTGTT
GGTTCTGATTTTCACCTCTTCGCCTTCCTCCCTCCCTCCCTCCCCCCCCC
TCTTTCAGCTCCTCCTGCTTCACTAAGGGTTTGAGACGAGCGAATGTTGC
GCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGTATGGCATGG
CGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCCCGCGGTACT
ACGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTCTTTTCTCCATCTT
TGTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTACATCGCGTTGGA
AAATGTAGAGTCAAGGATCCCCCTCGTCCACGCCCTACCGCTCGTCTGAT
CGAGTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTGCGTTGTGGA
TGCTCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAGACGGTATCT
GCCTCGTTCGAGATCAACTTGATGGCCAATGATGTCTATGCCGCGCAAGA
TGAAATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATGGACCTTTTCGCA
GTGATTCTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTCATCCACAGT
GTTGGTTCTGATTTTCACCTCTTCGCCTTCCTCCCTCCCTCCCTCCCCCC
CCCTCTTTCAGCTCCTCCTGCTTCACTAAGGGTTTGAGACGAGCGAATGT
TGCGCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGTATGGCA
TGGCGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCCCGCGGT
ACTACGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTCTTTTCTCCAT
CTTTGTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTACATCGCGTT
GGAAAATGTAGAGTCAAGGATCCCCCTCGTCCACGCCCTACCGCTCGTCT
GATCGAGTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTGCGTTGT
GGATGCTCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAGACGGTA
TCTGCCTCGTTCGAGATCAACTTGATGGCCAATGATGTCTATGCCGCGCA
AGATGAAATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATGGACCTTTTC
GCAGTGATTCTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTCATCCAC
AGTGTTGGTTCTGATTTTCACCTCTTCGCCTTCCTCCCTCCCTCCCTCCC
CCCCCCTCTTTCAGCTCCTCCTGCTTCACTAAGGGTTTGAGACGAGCGAA
TGTTGCGCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGTATG
GCATGGCGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCCCGC
GGTACTACGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTCTTTTCTC
CATCTTTGTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTACATCGC
GTTGGAAAATGTAGAGTCAAGGATCCCCCTCGTCCACGCCCTACCGCTCG
TCTGATCGAGTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTGCGT
TGTGGATGCTCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAGACG
GTATCTGCCTCGTTCGAGATCAACTTGATGGCCAATGATGTCTATGCCGC
GCAAGATGAAATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATGGACCTT
TTCGCAGTGATTCTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTCATC
CACAGTGTTGGTTCTGATTTTCACCTCTTCGCCTTCCTCCCTCCCTCCCT
CCCCCCCCCTCTTTCAGCTCCTCCTGCTTCACTAAGGGTTTGAGACGAGC
GAATGTTGCGCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGT
ATGGCATGGCGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCC
CGCGGTACTACGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTCTTTT
CTCCATCTTTGTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTACAT
CGCGTTGGAAAATGTAGAGTCAAGGATCCCCCTCGTCCACGCCCTACCGC
TCGTCTGATCGAGTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTG
CGTTGTGGATGCTCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAG
ACGGTATCTGCCTCGTTCGAGATCAACTTGATGGCCAATGATGTCTATGC
CGCGCAAGATGAAATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATGGAC
CTTTTCGCAGTGATTCTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTC
ATCCACAGTGTTGGTTCTGATTTTCACCTCTTCGCCTTCCTCCCTCCCTC
CCTCCCCCCCCCTCTTTCAGCTCCTCCTGCTTCACTAAGGGTTTGAGACG
AGCGAATGTTGCGCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGA
GGTATGGCATGGCGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAAC
GCCCGCGGTACTACGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTCT
TTTCTCCATCTTTGTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTTA
CATCGCGTTGGAAAATGTAGAGTCAAGGATCCCCCTCGTCCACGCCCTAC
CGCTCGTCTGATCGAGTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCG
TTGCGTTGTGGATGCTCTCTCCGCCATGCCAGCCCTACACGCGCAATAAC
AAGACGGTATCTGCCTCGTTCGAGATCAACTTGATGGCCAATGATGTCTA
TGCCGCGCAAGATGAAATGGAGGAAGGCGGGTAGAGGATTTCGGAAAATG
GACCTTTTCGCAGTGATT

Synonyms

Publications