jgi.p|Nanoce1779_2|614531, mRNA_11192 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614531
Unique NamemRNA_11192
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length724
Alignment locationscaffold_87:42524..43247 +

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Properties
Property NameValue
TranscriptId614617
TrackFilteredModels2
ProteinId614531
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:42524..43247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614531gene_11192Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614531mRNA_11192-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11192CDS_11192Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11192 ID=mRNA_11192|Name=jgi.p|Nanoce1779_2|614531|organism=Nannochloropsis oceanica|type=mRNA|length=724bp
TTGCTTTCGTTAACTTAATGCTTTTATTTTTCTCTTATGTCTTAAAATTG
CCTAAGCATCCCCAAATCGCGCCTACACGTCCCTGCTCCCCCACCATTTT
CCCACGACATGTGCCTCTCCCTCCTCCTCCACCACCCTCCGCCAGGCGTC
CTTCTCCATTTCCCTCAACACACATGTCACCGTACCTTCCTTCACTCCTT
TCGCCCAGTCCGCCACAGCAGCCACCAGAGCCGGCACTGTCCCACTTTTC
CTTCCTACCCTCCCTCTTTCTCTCCCTCCCATTGGCCCCTCCCTCCATCC
CAATAGACATGTCACCGTCGACGAGTCCGCCTCCGTCCCCCTCACCACCT
TGGCAAGCCTTCTCCTTTGCCCTTCTCCCAGCCCTCGCTCTCTCCGCCCC
TCCCTCCCTCCTTCCTCATCCCCCCATAGATGGTGGGCGAGGTGTCGAAG
AGCATTTAACCACGCCAACCCGCCGCGTTCAGGAGAGAGGGGAGCGGCCC
CGCCCGGCGTGCCTGCGAGAAAATTGGTATAGAGCTAGGGAGGGGGGAAA
GGGAGGCAAGGAGGGAGTGAGGGAGAAAGGTGGATGAGTTGAGTAGGTTG
TAGCTTGTCATCTAGTAGGGACATTTTCCAGCCGCTCACCTCCAAAAACG
ATACATTCTTCTCCGGCGGCTCCAAATACAAGTCCGCGTCGTCGTCCTCC
CTCCCTCCTTCCCTCCCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|614531

>mRNA_11192-protein ID=mRNA_11192-protein|Name=jgi.p|Nanoce1779_2|614531|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MLLFFSYVLKLPKHPQIAPTRPCSPTIFPRHVPLPPPPPPSARRPSPFPS
THMSPYLPSLLSPSPPQQPPEPALSHFSFLPSLFLSLPLAPPSIPIDMSP
STSPPPSPSPPWQAFSFALLPALALSAPPSLLPHPPIDGGRGVEEHLTTP
TRRVQERGERPRPACLRENWYRAREGGKGGKEGVREKGG*
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mRNA from alignment at scaffold_87:42524..43247+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11192 ID=mRNA_11192|Name=jgi.p|Nanoce1779_2|614531|organism=Nannochloropsis oceanica|type=mRNA|length=724bp|location=Sequence derived from alignment at scaffold_87:42524..43247+ (Nannochloropsis oceanica)
TTGCTTTCGTTAACTTAATGCTTTTATTTTTCTCTTATGTCTTAAAATTG
CCTAAGCATCCCCAAATCGCGCCTACACGTCCCTGCTCCCCCACCATTTT
CCCACGACATGTGCCTCTCCCTCCTCCTCCACCACCCTCCGCCAGGCGTC
CTTCTCCATTTCCCTCAACACACATGTCACCGTACCTTCCTTCACTCCTT
TCGCCCAGTCCGCCACAGCAGCCACCAGAGCCGGCACTGTCCCACTTTTC
CTTCCTACCCTCCCTCTTTCTCTCCCTCCCATTGGCCCCTCCCTCCATCC
CAATAGACATGTCACCGTCGACGAGTCCGCCTCCGTCCCCCTCACCACCT
TGGCAAGCCTTCTCCTTTGCCCTTCTCCCAGCCCTCGCTCTCTCCGCCCC
TCCCTCCCTCCTTCCTCATCCCCCCATAGATGGTGGGCGAGGTGTCGAAG
AGCATTTAACCACGCCAACCCGCCGCGTTCAGGAGAGAGGGGAGCGGCCC
CGCCCGGCGTGCCTGCGAGAAAATTGGTATAGAGCTAGGGAGGGGGGAAA
GGGAGGCAAGGAGGGAGTGAGGGAGAAAGGTGGATGAGTTGAGTAGGTTG
TAGCTTGTCATCTAGTAGGGACATTTTCCAGCCGCTCACCTCCAAAAACG
ATACATTCTTCTCCGGCGGCTCCAAATACAAGTCCGCGTCGTCGTCCTCC
CTCCCTCCTTCCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_87:42524..43247+

>mRNA_11192 ID=mRNA_11192|Name=jgi.p|Nanoce1779_2|614531|organism=Nannochloropsis oceanica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_87:42524..43247+ (Nannochloropsis oceanica)
ATGCTTTTATTTTTCTCTTATGTCTTAAAATTGCCTAAGCATCCCCAAAT
CGCGCCTACACGTCCCTGCTCCCCCACCATTTTCCCACGACATGTGCCTC
TCCCTCCTCCTCCACCACCCTCCGCCAGGCGTCCTTCTCCATTTCCCTCA
ACACACATGTCACCGTACCTTCCTTCACTCCTTTCGCCCAGTCCGCCACA
GCAGCCACCAGAGCCGGCACTGTCCCACTTTTCCTTCCTACCCTCCCTCT
TTCTCTCCCTCCCATTGGCCCCTCCCTCCATCCCAATAGACATGTCACCG
TCGACGAGTCCGCCTCCGTCCCCCTCACCACCTTGGCAAGCCTTCTCCTT
TGCCCTTCTCCCAGCCCTCGCTCTCTCCGCCCCTCCCTCCCTCCTTCCTC
ATCCCCCCATAGATGGTGGGCGAGGTGTCGAAGAGCATTTAACCACGCCA
ACCCGCCGCGTTCAGGAGAGAGGGGAGCGGCCCCGCCCGGCGTGCCTGCG
AGAAAATTGGTATAGAGCTAGGGAGGGGGGAAAGGGAGGCAAGGAGGGAG
TGAGGGAGAAAGGTGGATGA
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Synonyms
Publications