jgi.p|Nanoce1779_2|554962, mRNA_4268 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554962
Unique NamemRNA_4268
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2045
Alignment locationscaffold_10:149846..152051 -

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Properties
Property NameValue
TranscriptId555048
TrackFilteredModels2
ProteinId554962
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:149846..152051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554962gene_4268Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554962mRNA_4268-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4268CDS_4268Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4268 ID=mRNA_4268|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp
AGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGATGACTGTGCCA
AGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACATTCGGCAACTC
CTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATGGGACAAATTGA
CAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAAGGGTATTGGGA
GTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACTCTCCCTTGGGC
TTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTAAAATCAAGACT
TGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGGCATGAGCTTAT
CTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGGGAGCTGCAAAT
AACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCGATTGAGACGTC
TTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGCGGTGGTGGGAG
ATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATGACGCCGAGGCC
GTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAAGGTGCGACGAT
CGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGCATGTGCAAAGC
ATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGCAAATGGCGGAA
AAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAGGAGTTCAAAGA
ACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGTGATGAGCATTA
TGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATGCCCACCGAGAG
CTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAGGGCTTGGTGGT
ATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAGCACACCGGTAG
AGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGATTATGATTCCG
GAGCATTACAACGCCTACGCAGACCACATCCACGAGGCTCTTACCGTCGG
TCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCGTGTCTTGCGTC
TCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCCCACTTTCAAAC
CGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTTGCCTTGGCCCG
TAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAAGGCGGGCGTGT
TGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGTGCGGTAAAGGC
GCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACATCCTGGCAGGG
CGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAAGGCTCTAACGA
AGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATGGCAAGGGATTG
GATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCAGAGGATCCACC
GTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCTGTCCGAGGAGG
ACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTCCTGTTGTAGTA
GTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGATTGGGCAGGGAC
AGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGGAGGATATGGGA
TTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGAGAATGCCTGTG
GGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGGCAAATGTTTGC
ACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACACTGCAGTGCCT
CCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGGGATATTTCCAT
TTTAATGAAGCGGTCCCTTGGTTTCTAACAGTCTATATAAAGTAAGATTG
GCCTGTCTGTTGCGTTATTAGGGCCAATATCGATCTCTCAAAAGAAAAAT
ATCAAAATAAAATGATTAAAAGTAAAAATAAATAGAGAAGAAGAG
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protein sequence of jgi.p|Nanoce1779_2|554962

>mRNA_4268-protein ID=mRNA_4268-protein|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MADDCAKIKMQQQEACEEHIRQLLAQMTVEEKCMQMGQIDKAYVKDKYDL
STKGIGSVISGGSGQPFENSPLGFCDMIDDYQQYALKSRLGIPLLYGGDA
VHGMSLSKGTTLFPHNIGLGAANNPSLVEAVARATAIETSCTGVFWAFAP
CVAVVGDCRWGRTYESFGDDAEAVTANGVAHIKGLQGATIDMWGTRVSGT
VAACAKHYVGDGGVAFGTGQMAEKLLDRGDVRLNEEEFKEHLRPYVAAVK
AGVMSIMVSFSSVHGKQMHAHRELIEGVLRQQMGFKGLVVSDWAGHDQLR
EGSTPVEKLALCINAGVDMIMIPEHYNAYADHIHEALTVGLLLPARIDEA
CARVLRLKYQLGLFASPTAPLSNRALLPQIRCPAHLALARRAVQQSVVLL
KNKAGVLPLKGVSLKHLFVCGKGANDLGLTCGGWSTSWQGASGATTEGTP
IMKALTKALPRTRVTYDVYGKGLDATLHQVVLCVVSEDPPYAEWFGDRKD
LALSEEDQQVLDAVTHKGIPVVVVQLAGRPLLARDDWAGTDALLHAWLPG
TEGGYGIADVLLGHVKPVGRMPVGLPRDLPVAEATRQMFAHGSGLSYVEE
DLHCSASIPPIFLQREST*
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mRNA from alignment at scaffold_10:149846..152051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4268 ID=mRNA_4268|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at scaffold_10:149846..152051- (Nannochloropsis oceanica)
AGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGATGACTGTGCCA AGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACATTCGGCAACTC CTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATGGGACAAATTGT AAGTTACCAAGCACACAGGGTGGAAGATGGGATGGCGGGCGTAGAGAGAT GCCTAATAAAGGCTGCAAGGGAAAGAGATATACTTTTTGACACTGTTGAA TTTCCTCTGATTGGATGACTTCTCCCTCTAACCTAACCCTTCCAAAACAC ACAACACAGGACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAA GGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACT CTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTA AAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGG CATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGG GAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCG ATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGC GGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATG ACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAA GGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGC ATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGC AAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAG GAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGT GATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATG CCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAG GGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAG CACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGA TTATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCT CTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCG TGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCC CACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTT GCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAA GGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGT GCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACA TCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAA GGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATG GCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCA GAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCT GTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTC CTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGAT TGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGG AGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGA GAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGG CAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACA CTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGG GATATTTCCATTTTAATGAAGCGGTCCCTTGGTTTCTAACAGTCTATATA AAGTAAGATTGGCCTGTCTGTTGCGTTATTAGGGCCAATATCGATCTCTC AAAAGAAAAATATCAAAATAAAATGATTAAAAGTAAAAATAAATAGAGAA GAAGAG
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Coding sequence (CDS) from alignment at scaffold_10:149846..152051-

>mRNA_4268 ID=mRNA_4268|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=CDS|length=3714bp|location=Sequence derived from alignment at scaffold_10:149846..152051- (Nannochloropsis oceanica)
GACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAAGGGTATTGG
GAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACTCTCCCTTGG
GCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTAAAATCAAGA
CTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGGCATGAGCTT
ATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGGGAGCTGCAA
ATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCGATTGAGACG
TCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGCGGTGGTGGG
AGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATGACGCCGAGG
CCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAAGGTGCGACG
ATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGCATGTGCAAA
GCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGCAAATGGCGG
AAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAGGAGTTCAAA
GAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGTGATGAGCAT
TATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATGCCCACCGAG
AGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAGGGCTTGGTG
GTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAGCACACCGGT
AGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGATTATGATTC
CGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCTCTTACCGTC
GGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCGTGTCTTGCG
TCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCCCACTTTCAA
ACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTTGCCTTGGCC
CGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAAGGCGGGCGT
GTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGTGCGGTAAAG
GCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACATCCTGGCAG
GGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAAGGCTCTAAC
GAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATGGCAAGGGAT
TGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCAGAGGATCCA
CCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCTGTCCGAGGA
GGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTCCTGTTGTAG
TAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGATTGGGCAGGG
ACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGGAGGATATGG
GATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGAGAATGCCTG
TGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGGCAAATGTTT
GCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACACTGCAGTGC
CTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGATGGCAGATG
ACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACATT
CGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATGGG
ACAAATTGACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAAGG
GTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACTCT
CCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTAAA
ATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGGCA
TGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGGGA
GCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCGAT
TGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGCGG
TGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATGAC
GCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAAGG
TGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGCAT
GTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGCAA
ATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAGGA
GTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGTGA
TGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATGCC
CACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAGGG
CTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAGCA
CACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGATT
ATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCTCT
TACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCGTG
TCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCCCA
CTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTTGC
CTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAAGG
CGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGTGC
GGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACATC
CTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAAGG
CTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATGGC
AAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCAGA
GGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCTGT
CCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTCCT
GTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGATTG
GGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGGAG
GATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGAGA
ATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGGCA
AATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACACT
GCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGATG
GCAGATGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGA
GCACATTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGC
AAATGGGACAAATT
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Synonyms
Publications