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Properties
Property Name | Value |
TranscriptId | 555048 |
Track | FilteredModels2 |
ProteinId | 554962 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_10 | supercontig | scaffold_10:149846..152051 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4268 ID=mRNA_4268|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp AGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGATGACTGTGCCA AGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACATTCGGCAACTC CTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATGGGACAAATTGA CAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAAGGGTATTGGGA GTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACTCTCCCTTGGGC TTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTAAAATCAAGACT TGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGGCATGAGCTTAT CTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGGGAGCTGCAAAT AACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCGATTGAGACGTC TTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGCGGTGGTGGGAG ATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATGACGCCGAGGCC GTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAAGGTGCGACGAT CGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGCATGTGCAAAGC ATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGCAAATGGCGGAA AAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAGGAGTTCAAAGA ACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGTGATGAGCATTA TGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATGCCCACCGAGAG CTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAGGGCTTGGTGGT ATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAGCACACCGGTAG AGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGATTATGATTCCG GAGCATTACAACGCCTACGCAGACCACATCCACGAGGCTCTTACCGTCGG TCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCGTGTCTTGCGTC TCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCCCACTTTCAAAC CGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTTGCCTTGGCCCG TAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAAGGCGGGCGTGT TGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGTGCGGTAAAGGC GCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACATCCTGGCAGGG CGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAAGGCTCTAACGA AGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATGGCAAGGGATTG GATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCAGAGGATCCACC GTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCTGTCCGAGGAGG ACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTCCTGTTGTAGTA GTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGATTGGGCAGGGAC AGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGGAGGATATGGGA TTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGAGAATGCCTGTG GGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGGCAAATGTTTGC ACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACACTGCAGTGCCT CCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGGGATATTTCCAT TTTAATGAAGCGGTCCCTTGGTTTCTAACAGTCTATATAAAGTAAGATTG GCCTGTCTGTTGCGTTATTAGGGCCAATATCGATCTCTCAAAAGAAAAAT ATCAAAATAAAATGATTAAAAGTAAAAATAAATAGAGAAGAAGAG back to topprotein sequence of jgi.p|Nanoce1779_2|554962 >mRNA_4268-protein ID=mRNA_4268-protein|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp MADDCAKIKMQQQEACEEHIRQLLAQMTVEEKCMQMGQIDKAYVKDKYDL STKGIGSVISGGSGQPFENSPLGFCDMIDDYQQYALKSRLGIPLLYGGDA VHGMSLSKGTTLFPHNIGLGAANNPSLVEAVARATAIETSCTGVFWAFAP CVAVVGDCRWGRTYESFGDDAEAVTANGVAHIKGLQGATIDMWGTRVSGT VAACAKHYVGDGGVAFGTGQMAEKLLDRGDVRLNEEEFKEHLRPYVAAVK AGVMSIMVSFSSVHGKQMHAHRELIEGVLRQQMGFKGLVVSDWAGHDQLR EGSTPVEKLALCINAGVDMIMIPEHYNAYADHIHEALTVGLLLPARIDEA CARVLRLKYQLGLFASPTAPLSNRALLPQIRCPAHLALARRAVQQSVVLL KNKAGVLPLKGVSLKHLFVCGKGANDLGLTCGGWSTSWQGASGATTEGTP IMKALTKALPRTRVTYDVYGKGLDATLHQVVLCVVSEDPPYAEWFGDRKD LALSEEDQQVLDAVTHKGIPVVVVQLAGRPLLARDDWAGTDALLHAWLPG TEGGYGIADVLLGHVKPVGRMPVGLPRDLPVAEATRQMFAHGSGLSYVEE DLHCSASIPPIFLQREST* back to topmRNA from alignment at scaffold_10:149846..152051- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4268 ID=mRNA_4268|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at scaffold_10:149846..152051- (Nannochloropsis oceanica) AGGGATCCTCAGGAGTAAATTTACGCCCAAAATGGCAGATGACTGTGCCA
AGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACATTCGGCAACTC
CTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATGGGACAAATTGT
AAGTTACCAAGCACACAGGGTGGAAGATGGGATGGCGGGCGTAGAGAGAT
GCCTAATAAAGGCTGCAAGGGAAAGAGATATACTTTTTGACACTGTTGAA
TTTCCTCTGATTGGATGACTTCTCCCTCTAACCTAACCCTTCCAAAACAC
ACAACACAGGACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAA
GGGTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACT
CTCCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTA
AAATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGG
CATGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGG
GAGCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCG
ATTGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGC
GGTGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATG
ACGCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAA
GGTGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGC
ATGTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGC
AAATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAG
GAGTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGT
GATGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATG
CCCACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAG
GGCTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAG
CACACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGA
TTATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCT
CTTACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCG
TGTCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCC
CACTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTT
GCCTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAA
GGCGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGT
GCGGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACA
TCCTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAA
GGCTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATG
GCAAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCA
GAGGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCT
GTCCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTC
CTGTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGAT
TGGGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGG
AGGATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGA
GAATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGG
CAAATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACA
CTGCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGG
GATATTTCCATTTTAATGAAGCGGTCCCTTGGTTTCTAACAGTCTATATA
AAGTAAGATTGGCCTGTCTGTTGCGTTATTAGGGCCAATATCGATCTCTC
AAAAGAAAAATATCAAAATAAAATGATTAAAAGTAAAAATAAATAGAGAA
GAAGAG back to topCoding sequence (CDS) from alignment at scaffold_10:149846..152051- >mRNA_4268 ID=mRNA_4268|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=CDS|length=3714bp|location=Sequence derived from alignment at scaffold_10:149846..152051- (Nannochloropsis oceanica) GACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAAGGGTATTGG GAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACTCTCCCTTGG GCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTAAAATCAAGA CTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGGCATGAGCTT ATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGGGAGCTGCAA ATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCGATTGAGACG TCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGCGGTGGTGGG AGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATGACGCCGAGG CCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAAGGTGCGACG ATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGCATGTGCAAA GCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGCAAATGGCGG AAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAGGAGTTCAAA GAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGTGATGAGCAT TATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATGCCCACCGAG AGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAGGGCTTGGTG GTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAGCACACCGGT AGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGATTATGATTC CGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCTCTTACCGTC GGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCGTGTCTTGCG TCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCCCACTTTCAA ACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTTGCCTTGGCC CGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAAGGCGGGCGT GTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGTGCGGTAAAG GCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACATCCTGGCAG GGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAAGGCTCTAAC GAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATGGCAAGGGAT TGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCAGAGGATCCA CCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCTGTCCGAGGA GGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTCCTGTTGTAG TAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGATTGGGCAGGG ACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGGAGGATATGG GATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGAGAATGCCTG TGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGGCAAATGTTT GCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACACTGCAGTGC CTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGATGGCAGATG ACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGAGCACATT CGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGCAAATGGG ACAAATTGACAAGGCCTACGTCAAGGACAAGTACGACCTCAGCACCAAGG GTATTGGGAGTGTGATAAGTGGCGGCAGTGGGCAGCCCTTTGAAAACTCT CCCTTGGGCTTTTGCGACATGATTGACGACTACCAGCAGTACGCCCTAAA ATCAAGACTTGGCATTCCCTTGCTTTACGGCGGCGATGCGGTGCACGGCA TGAGCTTATCTAAGGGTACCACGCTATTCCCCCACAACATCGGTTTGGGA GCTGCAAATAACCCATCTTTGGTGGAGGCTGTCGCGAGGGCCACGGCGAT TGAGACGTCTTGTACCGGGGTGTTTTGGGCGTTTGCGCCGTGCGTAGCGG TGGTGGGAGATTGCAGGTGGGGACGAACATACGAGAGCTTTGGGGATGAC GCCGAGGCCGTAACTGCTAATGGTGTTGCACATATCAAGGGGCTACAAGG TGCGACGATCGATATGTGGGGGACCCGGGTTTCGGGTACGGTGGCGGCAT GTGCAAAGCATTATGTTGGTGATGGCGGGGTAGCCTTCGGAACAGGGCAA ATGGCGGAAAAGCTTTTGGATAGAGGCGACGTGCGATTGAATGAAGAGGA GTTCAAAGAACATTTGAGGCCATATGTGGCGGCAGTCAAGGCGGGAGTGA TGAGCATTATGGTTTCGTTTAGTAGCGTGCACGGGAAGCAGATGCATGCC CACCGAGAGCTTATTGAAGGGGTGCTGCGACAGCAGATGGGGTTCAAGGG CTTGGTGGTATCAGATTGGGCAGGACATGACCAACTTCGGGAGGGGAGCA CACCGGTAGAGAAGTTGGCGTTATGCATCAACGCGGGAGTGGACATGATT ATGATTCCGGAGCATTACAACGCCTACGCAGACCACATCCACGAGGCTCT TACCGTCGGTCTCCTCCTTCCCGCCCGTATTGACGAGGCTTGTGCCCGTG TCTTGCGTCTCAAGTACCAGCTGGGGCTCTTTGCATCTCCCACAGCCCCA CTTTCAAACCGAGCGTTGTTACCGCAAATACGATGCCCTGCCCACCTTGC CTTGGCCCGTAGGGCAGTACAGCAATCAGTTGTCTTGCTGAAGAACAAGG CGGGCGTGTTGCCGCTGAAGGGGGTTTCGTTGAAGCATCTTTTTGTGTGC GGTAAAGGCGCAAACGATTTGGGTTTGACGTGCGGTGGCTGGTCCACATC CTGGCAGGGCGCGAGTGGAGCCACCACTGAGGGTACTCCCATCATGAAGG CTCTAACGAAGGCACTGCCCAGAACCAGGGTGACCTATGACGTGTATGGC AAGGGATTGGATGCAACCCTTCACCAGGTGGTCCTGTGTGTGGTATCAGA GGATCCACCGTACGCCGAGTGGTTCGGAGATCGTAAAGATTTGGCGCTGT CCGAGGAGGACCAGCAAGTGCTGGATGCCGTCACCCATAAGGGTATTCCT GTTGTAGTAGTGCAGCTGGCAGGCCGTCCACTTCTTGCCCGCGATGATTG GGCAGGGACAGATGCATTGTTGCATGCGTGGCTGCCCGGCACCGAGGGAG GATATGGGATTGCGGATGTACTGTTGGGCCATGTTAAACCTGTGGGGAGA ATGCCTGTGGGCTTGCCGAGGGACTTACCTGTAGCTGAGGCTACACGGCA AATGTTTGCACATGGGTCTGGTTTGTCATACGTGGAGGAGGATTTACACT GCAGTGCCTCCATACCGCCGATTTTTCTTCAGCGAGAGTCCACATAGATG GCAGATGACTGTGCCAAGATAAAGATGCAGCAGCAGGAAGCATGCGAAGA GCACATTCGGCAACTCCTGGCGCAGATGACGGTCGAAGAGAAATGCATGC AAATGGGACAAATT back to top
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