jgi.p|Nanoce1779_2|554962, gene_4268 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554962
Unique Namegene_4268
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:149846..152051 -

Link to JBrowse

Properties
Property NameValue
TranscriptId555048
ProteinId554962
Product nameglycoside hydrolase family 3 domain protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:149846..152051 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008422beta-glucosidase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL022ncniL022Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02800NO09G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554962mRNA_4268-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554962mRNA_4268Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|554962

>mRNA_4268-protein ID=mRNA_4268-protein|Name=jgi.p|Nanoce1779_2|554962|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MADDCAKIKMQQQEACEEHIRQLLAQMTVEEKCMQMGQIDKAYVKDKYDL
STKGIGSVISGGSGQPFENSPLGFCDMIDDYQQYALKSRLGIPLLYGGDA
VHGMSLSKGTTLFPHNIGLGAANNPSLVEAVARATAIETSCTGVFWAFAP
CVAVVGDCRWGRTYESFGDDAEAVTANGVAHIKGLQGATIDMWGTRVSGT
VAACAKHYVGDGGVAFGTGQMAEKLLDRGDVRLNEEEFKEHLRPYVAAVK
AGVMSIMVSFSSVHGKQMHAHRELIEGVLRQQMGFKGLVVSDWAGHDQLR
EGSTPVEKLALCINAGVDMIMIPEHYNAYADHIHEALTVGLLLPARIDEA
CARVLRLKYQLGLFASPTAPLSNRALLPQIRCPAHLALARRAVQQSVVLL
KNKAGVLPLKGVSLKHLFVCGKGANDLGLTCGGWSTSWQGASGATTEGTP
IMKALTKALPRTRVTYDVYGKGLDATLHQVVLCVVSEDPPYAEWFGDRKD
LALSEEDQQVLDAVTHKGIPVVVVQLAGRPLLARDDWAGTDALLHAWLPG
TEGGYGIADVLLGHVKPVGRMPVGLPRDLPVAEATRQMFAHGSGLSYVEE
DLHCSASIPPIFLQREST*
back to top
Synonyms
Publications