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Properties
| Property Name | Value |
|---|
| TranscriptId | 591308 |
| Track | FilteredModels2 |
| ProteinId | 591222 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:319312..321124 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5046 ID=mRNA_5046|Name=jgi.p|Nanoce1779_2|591222|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
CAGCATCTGTTTCGTCGTAACCCGCGCCACGTGCAGTGTTATCTGCTCCA
CTATGTCTCCACCCACTGCCGCCGCCCATCATCTTCCGGCCTGCATGCTT
GCAGGTGTGGCGGACCACCACGGCGACCGCTTTGACATGCGAGAGGTCCC
CGTCGAGACGCCGGGGCCTGGCCAGGTCCTCGTCAAGATTGTCACGAGCG
GTGTCTGCCATACCGACGTCCACGCCGTCGATGGCGACTGGCCTGCGCCC
ACGAAGCTCCCTCTCATTCCCGGACACGAAGGTGCCGGCATAATTGTTGC
CGTCGGCCCCGATGTAAGCAGTACCATTGCTGCCGTTGGAGACCGCGTGG
GCATCCCCTGGCTTCATTCCAGCTGCGGCACCTGCGAGCATTGCTTGTCG
GGTCACGAGAATTTATGTCCCAAGCAAGACAACACGGGTTATTCGGTCGA
CGGTTGCTTTGCTCAGTATACGCTGGCTCCGGCAGCGCACGTGGCGAAGA
TTCCCGATGCCGTTAGTTTCGAACAGGCCGCCCCCATCCTCTGCGCCGGC
GTTACAACCTACTCAGGCATCAAAGCCACCGAGGCTCGCCCCGGCCAGTT
CCTCACAGTCATTGGCGCCGCCGGTGGATTGGGGCACCTGGCCGTGCAAT
TTGGTGTGGCCATGGGTTTGCGTGTTTTGGCACTGGATTGTGGAGAGGAT
AAATTGAAATTTTGCACAGACACATTGGGTGCGGAGGCGGCGTTCGAGGC
AATGGACCCGGAGGTGGCAGCGCACGTGACCAAGGCCACTAACGGCGGAT
CGCACGGCGTCCTCTGCCTCGCTCCCTCCATCGGCGCCTTCAAATCCGCC
GTGGGGCTTTGTCGTCGAGGGGGCACAATTGTTATGGTTGGATTGCCCAA
AGGTGATATGCCTCTCAACATTTTTGACGTTGTCATTCGGGGGATTACAG
TGCGAGGGAGTATTGTGGGGACCCGAAAGGATTTGGCGGAGGCTTTGGAT
TTTGCGGCGCAGGGGAAGGTGAATTGTCATGTGGATGTGCATCCGTTTAA
GGAGCTGAATCAGATGTTTGATGATTTGCGCTCAGGGAAGGTATTGGGAC
GGATTGTGTTGAACGTGAGTGGGGACTAGAGAGAGGGAGGGAGGACGGCG
CTTGCGTGTGAGGGTCGAGCTCTATGTGTATGTGAGTGTATCCATCTGAT
TTTGGTAGTGAGATTGACAGATTTACATTATATG back to topprotein sequence of jgi.p|Nanoce1779_2|591222 >mRNA_5046-protein ID=mRNA_5046-protein|Name=jgi.p|Nanoce1779_2|591222|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSPPTAAAHHLPACMLAGVADHHGDRFDMREVPVETPGPGQVLVKIVTSG
VCHTDVHAVDGDWPAPTKLPLIPGHEGAGIIVAVGPDVSSTIAAVGDRVG
IPWLHSSCGTCEHCLSGHENLCPKQDNTGYSVDGCFAQYTLAPAAHVAKI
PDAVSFEQAAPILCAGVTTYSGIKATEARPGQFLTVIGAAGGLGHLAVQF
GVAMGLRVLALDCGEDKLKFCTDTLGAEAAFEAMDPEVAAHVTKATNGGS
HGVLCLAPSIGAFKSAVGLCRRGGTIVMVGLPKGDMPLNIFDVVIRGITV
RGSIVGTRKDLAEALDFAAQGKVNCHVDVHPFKELNQMFDDLRSGKVLGR
IVLNVSGD* back to topmRNA from alignment at scaffold_12:319312..321124- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5046 ID=mRNA_5046|Name=jgi.p|Nanoce1779_2|591222|organism=Nannochloropsis oceanica|type=mRNA|length=1813bp|location=Sequence derived from alignment at scaffold_12:319312..321124- (Nannochloropsis oceanica)
CAGCATCTGTTTCGTCGTAACCCGCGCCACGTGCAGTGTTATCTGCTCCA
CTATGTCTCCACCCACTGCCGCCGCCCATCATCTTCCGGCCTGCATGCTT
GCAGGTGTGGCGGACCACCACGGCGACCGCTTTGACATGCGAGAGGTCCC
CGTCGAGACGCCGGGGCCTGGCCAGGTCCTCGTCAAGATTGTCACGAGCG
GTGTCTGCCATGTAGGTGGAGGATTTGGCGTGAAGATAGAGAGAGGGGGA
AAGGCGGGGATTCAGACAGCACGTGAGTGTTGAATCCTGGAAGGCCGATG
GCACGTGGATGTTGAATGATAGGCTCAACCATATGAATGAACACACCGTT
TCATGCGAGGTCCTTTGCTGAGAAATGGCAACCCCTCAACGCCTACTTCC
TCATCCCAATCGCAATTACCCTTTCCCATTCCCCACGACCAGACCGACGT
CCACGCCGTCGATGGCGACTGGCCTGCGCCCACGAAGCTCCCTCTCATTC
CCGGACACGAAGGTGCCGGCATAATTGTTGCCGTCGGCCCCGATGTAAGC
AGTACCATTGCTGCCGTTGGAGACCGCGTGGGCATCCCCTGGCTTCATTC
CAGCTGCGGCACCTGCGAGCATTGCTTGTCGGGTCACGAGAATTTATGTC
CCAAGCAAGACAACACGGGTTATTCGGTCGACGGTTGCTTTGCTCAGTAT
ACGCTGGCTCCGGCAGCGCACGTGGCGAAGATTCCCGATGCCGTTAGTTT
CGAACAGGTATGTGGGAGGTCAAGGGAGGGAAGGATTTGAGGAGGGACAG
CTTTACTTGAAGTGAGAAGTCGTTAATGAAGTACCCAGGCACAATTTTGC
TTTAAATACTGATCTAATCCTTCTTCAAATGCATTTCTTGATAATTCACG
TTTCTTTTGGCATGTCTTTTTCTCCTGAAAAGGCCGCCCCCATCCTCTGC
GCCGGCGTTACAACCTACTCAGGCATCAAAGCCACCGAGGCTCGCCCCGG
CCAGTTCCTCACAGTCATTGGCGCCGCCGGTGGATTGGGGCACCTGGCCG
TGCAATTTGGTGTGGCCATGGGTTTGCGTGTTTTGGCACTGGATTGTGGA
GAGGATAAATTGAAATTTTGCACAGACACATTGGGTGCGGAGGCGGCGTT
CGAGGCAATGGACCCGGAGGTGGCAGCGCACGTAAGAAGGAGGGAAGGAG
GAGGGGAAGCGAGGGATGCCGCAACTATATTGTTTCATATTCTTCTCACA
ATTTCCCCATATGTGTTCTACTTTCCTTGGAATCAGACAGATCCCGTTAC
TCATCGGACCCCTCTTATCCCCCCCCTCCTTCCCTCCCTTGTTGCCTCGC
TCAGGTGACCAAGGCCACTAACGGCGGATCGCACGGCGTCCTCTGCCTCG
CTCCCTCCATCGGCGCCTTCAAATCCGCCGTGGGGCTTTGTCGTCGAGGG
GGCACAATTGTTATGGTTGGATTGCCCAAAGGTGATATGCCTCTCAACAT
TTTTGACGTTGTCATTCGGGGGATTACAGTGCGAGGGAGTATTGTGGGGA
CCCGAAAGGATTTGGCGGAGGCTTTGGATTTTGCGGCGCAGGGGAAGGTG
AATTGTCATGTGGATGTGCATCCGTTTAAGGAGCTGAATCAGATGTTTGA
TGATTTGCGCTCAGGGAAGGTATTGGGACGGATTGTGTTGAACGTGAGTG
GGGACTAGAGAGAGGGAGGGAGGACGGCGCTTGCGTGTGAGGGTCGAGCT
CTATGTGTATGTGAGTGTATCCATCTGATTTTGGTAGTGAGATTGACAGA
TTTACATTATATG back to topCoding sequence (CDS) from alignment at scaffold_12:319312..321124- >mRNA_5046 ID=mRNA_5046|Name=jgi.p|Nanoce1779_2|591222|organism=Nannochloropsis oceanica|type=CDS|length=4308bp|location=Sequence derived from alignment at scaffold_12:319312..321124- (Nannochloropsis oceanica)
GTGACCAAGGCCACTAACGGCGGATCGCACGGCGTCCTCTGCCTCGCTCC
CTCCATCGGCGCCTTCAAATCCGCCGTGGGGCTTTGTCGTCGAGGGGGCA
CAATTGTTATGGTTGGATTGCCCAAAGGTGATATGCCTCTCAACATTTTT
GACGTTGTCATTCGGGGGATTACAGTGCGAGGGAGTATTGTGGGGACCCG
AAAGGATTTGGCGGAGGCTTTGGATTTTGCGGCGCAGGGGAAGGTGAATT
GTCATGTGGATGTGCATCCGTTTAAGGAGCTGAATCAGATGTTTGATGAT
TTGCGCTCAGGGAAGGTATTGGGACGGATTGTGTTGAACGTGAGTGGGGA
CTAGGCCGCCCCCATCCTCTGCGCCGGCGTTACAACCTACTCAGGCATCA
AAGCCACCGAGGCTCGCCCCGGCCAGTTCCTCACAGTCATTGGCGCCGCC
GGTGGATTGGGGCACCTGGCCGTGCAATTTGGTGTGGCCATGGGTTTGCG
TGTTTTGGCACTGGATTGTGGAGAGGATAAATTGAAATTTTGCACAGACA
CATTGGGTGCGGAGGCGGCGTTCGAGGCAATGGACCCGGAGGTGGCAGCG
CACACCGACGTCCACGCCGTCGATGGCGACTGGCCTGCGCCCACGAAGCT
CCCTCTCATTCCCGGACACGAAGGTGCCGGCATAATTGTTGCCGTCGGCC
CCGATGTAAGCAGTACCATTGCTGCCGTTGGAGACCGCGTGGGCATCCCC
TGGCTTCATTCCAGCTGCGGCACCTGCGAGCATTGCTTGTCGGGTCACGA
GAATTTATGTCCCAAGCAAGACAACACGGGTTATTCGGTCGACGGTTGCT
TTGCTCAGTATACGCTGGCTCCGGCAGCGCACGTGGCGAAGATTCCCGAT
GCCGTTAGTTTCGAACAGATGTCTCCACCCACTGCCGCCGCCCATCATCT
TCCGGCCTGCATGCTTGCAGGTGTGGCGGACCACCACGGCGACCGCTTTG
ACATGCGAGAGGTCCCCGTCGAGACGCCGGGGCCTGGCCAGGTCCTCGTC
AAGATTGTCACGAGCGGTGTCTGCCATGTGACCAAGGCCACTAACGGCGG
ATCGCACGGCGTCCTCTGCCTCGCTCCCTCCATCGGCGCCTTCAAATCCG
CCGTGGGGCTTTGTCGTCGAGGGGGCACAATTGTTATGGTTGGATTGCCC
AAAGGTGATATGCCTCTCAACATTTTTGACGTTGTCATTCGGGGGATTAC
AGTGCGAGGGAGTATTGTGGGGACCCGAAAGGATTTGGCGGAGGCTTTGG
ATTTTGCGGCGCAGGGGAAGGTGAATTGTCATGTGGATGTGCATCCGTTT
AAGGAGCTGAATCAGATGTTTGATGATTTGCGCTCAGGGAAGGTATTGGG
ACGGATTGTGTTGAACGTGAGTGGGGACTAGGCCGCCCCCATCCTCTGCG
CCGGCGTTACAACCTACTCAGGCATCAAAGCCACCGAGGCTCGCCCCGGC
CAGTTCCTCACAGTCATTGGCGCCGCCGGTGGATTGGGGCACCTGGCCGT
GCAATTTGGTGTGGCCATGGGTTTGCGTGTTTTGGCACTGGATTGTGGAG
AGGATAAATTGAAATTTTGCACAGACACATTGGGTGCGGAGGCGGCGTTC
GAGGCAATGGACCCGGAGGTGGCAGCGCACACCGACGTCCACGCCGTCGA
TGGCGACTGGCCTGCGCCCACGAAGCTCCCTCTCATTCCCGGACACGAAG
GTGCCGGCATAATTGTTGCCGTCGGCCCCGATGTAAGCAGTACCATTGCT
GCCGTTGGAGACCGCGTGGGCATCCCCTGGCTTCATTCCAGCTGCGGCAC
CTGCGAGCATTGCTTGTCGGGTCACGAGAATTTATGTCCCAAGCAAGACA
ACACGGGTTATTCGGTCGACGGTTGCTTTGCTCAGTATACGCTGGCTCCG
GCAGCGCACGTGGCGAAGATTCCCGATGCCGTTAGTTTCGAACAGATGTC
TCCACCCACTGCCGCCGCCCATCATCTTCCGGCCTGCATGCTTGCAGGTG
TGGCGGACCACCACGGCGACCGCTTTGACATGCGAGAGGTCCCCGTCGAG
ACGCCGGGGCCTGGCCAGGTCCTCGTCAAGATTGTCACGAGCGGTGTCTG
CCATGTGACCAAGGCCACTAACGGCGGATCGCACGGCGTCCTCTGCCTCG
CTCCCTCCATCGGCGCCTTCAAATCCGCCGTGGGGCTTTGTCGTCGAGGG
GGCACAATTGTTATGGTTGGATTGCCCAAAGGTGATATGCCTCTCAACAT
TTTTGACGTTGTCATTCGGGGGATTACAGTGCGAGGGAGTATTGTGGGGA
CCCGAAAGGATTTGGCGGAGGCTTTGGATTTTGCGGCGCAGGGGAAGGTG
AATTGTCATGTGGATGTGCATCCGTTTAAGGAGCTGAATCAGATGTTTGA
TGATTTGCGCTCAGGGAAGGTATTGGGACGGATTGTGTTGAACGTGAGTG
GGGACTAGGCCGCCCCCATCCTCTGCGCCGGCGTTACAACCTACTCAGGC
ATCAAAGCCACCGAGGCTCGCCCCGGCCAGTTCCTCACAGTCATTGGCGC
CGCCGGTGGATTGGGGCACCTGGCCGTGCAATTTGGTGTGGCCATGGGTT
TGCGTGTTTTGGCACTGGATTGTGGAGAGGATAAATTGAAATTTTGCACA
GACACATTGGGTGCGGAGGCGGCGTTCGAGGCAATGGACCCGGAGGTGGC
AGCGCACACCGACGTCCACGCCGTCGATGGCGACTGGCCTGCGCCCACGA
AGCTCCCTCTCATTCCCGGACACGAAGGTGCCGGCATAATTGTTGCCGTC
GGCCCCGATGTAAGCAGTACCATTGCTGCCGTTGGAGACCGCGTGGGCAT
CCCCTGGCTTCATTCCAGCTGCGGCACCTGCGAGCATTGCTTGTCGGGTC
ACGAGAATTTATGTCCCAAGCAAGACAACACGGGTTATTCGGTCGACGGT
TGCTTTGCTCAGTATACGCTGGCTCCGGCAGCGCACGTGGCGAAGATTCC
CGATGCCGTTAGTTTCGAACAGATGTCTCCACCCACTGCCGCCGCCCATC
ATCTTCCGGCCTGCATGCTTGCAGGTGTGGCGGACCACCACGGCGACCGC
TTTGACATGCGAGAGGTCCCCGTCGAGACGCCGGGGCCTGGCCAGGTCCT
CGTCAAGATTGTCACGAGCGGTGTCTGCCATGTGACCAAGGCCACTAACG
GCGGATCGCACGGCGTCCTCTGCCTCGCTCCCTCCATCGGCGCCTTCAAA
TCCGCCGTGGGGCTTTGTCGTCGAGGGGGCACAATTGTTATGGTTGGATT
GCCCAAAGGTGATATGCCTCTCAACATTTTTGACGTTGTCATTCGGGGGA
TTACAGTGCGAGGGAGTATTGTGGGGACCCGAAAGGATTTGGCGGAGGCT
TTGGATTTTGCGGCGCAGGGGAAGGTGAATTGTCATGTGGATGTGCATCC
GTTTAAGGAGCTGAATCAGATGTTTGATGATTTGCGCTCAGGGAAGGTAT
TGGGACGGATTGTGTTGAACGTGAGTGGGGACTAGGCCGCCCCCATCCTC
TGCGCCGGCGTTACAACCTACTCAGGCATCAAAGCCACCGAGGCTCGCCC
CGGCCAGTTCCTCACAGTCATTGGCGCCGCCGGTGGATTGGGGCACCTGG
CCGTGCAATTTGGTGTGGCCATGGGTTTGCGTGTTTTGGCACTGGATTGT
GGAGAGGATAAATTGAAATTTTGCACAGACACATTGGGTGCGGAGGCGGC
GTTCGAGGCAATGGACCCGGAGGTGGCAGCGCACACCGACGTCCACGCCG
TCGATGGCGACTGGCCTGCGCCCACGAAGCTCCCTCTCATTCCCGGACAC
GAAGGTGCCGGCATAATTGTTGCCGTCGGCCCCGATGTAAGCAGTACCAT
TGCTGCCGTTGGAGACCGCGTGGGCATCCCCTGGCTTCATTCCAGCTGCG
GCACCTGCGAGCATTGCTTGTCGGGTCACGAGAATTTATGTCCCAAGCAA
GACAACACGGGTTATTCGGTCGACGGTTGCTTTGCTCAGTATACGCTGGC
TCCGGCAGCGCACGTGGCGAAGATTCCCGATGCCGTTAGTTTCGAACAGA
TGTCTCCACCCACTGCCGCCGCCCATCATCTTCCGGCCTGCATGCTTGCA
GGTGTGGCGGACCACCACGGCGACCGCTTTGACATGCGAGAGGTCCCCGT
CGAGACGCCGGGGCCTGGCCAGGTCCTCGTCAAGATTGTCACGAGCGGTG
TCTGCCAT back to top
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