jgi.p|Nanoce1779_2|119674, mRNA_11942 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|119674
Unique NamemRNA_11942
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length804
Alignment locationscaffold_171:19048..19851 -

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Properties
Property NameValue
TranscriptId119760
TrackFilteredModels2
ProteinId119674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:19048..19851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|119674gene_11942Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|119674mRNA_11942-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11942CDS_11942Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11942 ID=mRNA_11942|Name=jgi.p|Nanoce1779_2|119674|organism=Nannochloropsis oceanica|type=mRNA|length=804bp
GCCGGTGACAAGGCTCGTTGTGGTGAGTAAAACAACAAAAAGTAAAAAGA
GCAAACAACTTACATAACTTTCTGTATGGTTTTTTGGTGTTTTGTAAGAA
ATCTGGGGGCCATGGTCCTTGTTATACATGTGACTCACCAAAGAGCTGCA
ATTTACCAGGGTCCGGGGCCTGCAGCTCAAGAGAACCAAGAACGACTTGC
CTGGGATCTGCTCTATAGCGATGTCTGCCTGTTTAATAAAGAAAAGGAAG
AAAAAGTGGAGGAAGAGGAGGAGGAAGAAAAAAAAACACACTCAAAATCA
TATTTGACACCGTGCCGCAGCCTCGAGTCATTCGGCAGGCTAAAGAGTCG
AAACAGTTGGCTCAGGATAAATGCAAGCTTTCAAGGGGACAAGATAAAAG
GGATGCTCGGGGTAGAAATGAGAGCTACAGAAAGAGGGCAGGGTCTTCCA
GCGAGCAAGGTCTCGCAGACCGGCATCCTGCCACACGTCTACCCCCTGGA
GCAATGGGAAAACTCCATAGGCATGTCGGAGGGTAGGATATTGGAGGCCC
AGGGCTCCTCGGGGTGCAGCTGCAAAAAGAACGGGGTTGGGAGGTTAGGG
CTTGCCCTCCTTGCACCAGGATACCGTCGGATTCATGTGATTTGGGCGAT
AAGACGGATCCAGGTGGTAGCGATAGGATGATGCCGAATCCGTTCCTCGC
TCGGAAGGCGAGGGGCTCCCCGCCTCATGTAGCGCATGATTACAGATTAT
GGGGGGTGGAGGGATAAAGGTGACAGGCAGGGCCAGCACCTGCCTGGCTA
AAAC
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protein sequence of jgi.p|Nanoce1779_2|119674

>mRNA_11942-protein ID=mRNA_11942-protein|Name=jgi.p|Nanoce1779_2|119674|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MVFWCFVRNLGAMVLVIHVTHQRAAIYQGPGPAAQENQERLAWDLLYSDV
CLFNKEKEEKVEEEEEEEKKTHSKSYLTPCRSLESFGRLKSRNSWLRINA
SFQGDKIKGMLGVEMRATERGQGLPASKVSQTGILPHVYPLEQWENSIGM
SEGRILEAQGSSGCSCKKNGVGRLGLALLAPGYRRIHVIWAIRRIQVVAI
G*
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mRNA from alignment at scaffold_171:19048..19851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11942 ID=mRNA_11942|Name=jgi.p|Nanoce1779_2|119674|organism=Nannochloropsis oceanica|type=mRNA|length=804bp|location=Sequence derived from alignment at scaffold_171:19048..19851- (Nannochloropsis oceanica)
GCCGGTGACAAGGCTCGTTGTGGTGAGTAAAACAACAAAAAGTAAAAAGA
GCAAACAACTTACATAACTTTCTGTATGGTTTTTTGGTGTTTTGTAAGAA
ATCTGGGGGCCATGGTCCTTGTTATACATGTGACTCACCAAAGAGCTGCA
ATTTACCAGGGTCCGGGGCCTGCAGCTCAAGAGAACCAAGAACGACTTGC
CTGGGATCTGCTCTATAGCGATGTCTGCCTGTTTAATAAAGAAAAGGAAG
AAAAAGTGGAGGAAGAGGAGGAGGAAGAAAAAAAAACACACTCAAAATCA
TATTTGACACCGTGCCGCAGCCTCGAGTCATTCGGCAGGCTAAAGAGTCG
AAACAGTTGGCTCAGGATAAATGCAAGCTTTCAAGGGGACAAGATAAAAG
GGATGCTCGGGGTAGAAATGAGAGCTACAGAAAGAGGGCAGGGTCTTCCA
GCGAGCAAGGTCTCGCAGACCGGCATCCTGCCACACGTCTACCCCCTGGA
GCAATGGGAAAACTCCATAGGCATGTCGGAGGGTAGGATATTGGAGGCCC
AGGGCTCCTCGGGGTGCAGCTGCAAAAAGAACGGGGTTGGGAGGTTAGGG
CTTGCCCTCCTTGCACCAGGATACCGTCGGATTCATGTGATTTGGGCGAT
AAGACGGATCCAGGTGGTAGCGATAGGATGATGCCGAATCCGTTCCTCGC
TCGGAAGGCGAGGGGCTCCCCGCCTCATGTAGCGCATGATTACAGATTAT
GGGGGGTGGAGGGATAAAGGTGACAGGCAGGGCCAGCACCTGCCTGGCTA
AAAC
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Coding sequence (CDS) from alignment at scaffold_171:19048..19851-

>mRNA_11942 ID=mRNA_11942|Name=jgi.p|Nanoce1779_2|119674|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_171:19048..19851- (Nannochloropsis oceanica)
ATGGTTTTTTGGTGTTTTGTAAGAAATCTGGGGGCCATGGTCCTTGTTAT
ACATGTGACTCACCAAAGAGCTGCAATTTACCAGGGTCCGGGGCCTGCAG
CTCAAGAGAACCAAGAACGACTTGCCTGGGATCTGCTCTATAGCGATGTC
TGCCTGTTTAATAAAGAAAAGGAAGAAAAAGTGGAGGAAGAGGAGGAGGA
AGAAAAAAAAACACACTCAAAATCATATTTGACACCGTGCCGCAGCCTCG
AGTCATTCGGCAGGCTAAAGAGTCGAAACAGTTGGCTCAGGATAAATGCA
AGCTTTCAAGGGGACAAGATAAAAGGGATGCTCGGGGTAGAAATGAGAGC
TACAGAAAGAGGGCAGGGTCTTCCAGCGAGCAAGGTCTCGCAGACCGGCA
TCCTGCCACACGTCTACCCCCTGGAGCAATGGGAAAACTCCATAGGCATG
TCGGAGGGTAGGATATTGGAGGCCCAGGGCTCCTCGGGGTGCAGCTGCAA
AAAGAACGGGGTTGGGAGGTTAGGGCTTGCCCTCCTTGCACCAGGATACC
GTCGGATTCATGTGATTTGGGCGATAAGACGGATCCAGGTGGTAGCGATA
GGATGA
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Synonyms
Publications