jgi.p|Nanoce1779_2|598626, mRNA_7401 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598626
Unique NamemRNA_7401
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1178
Alignment locationscaffold_19:426426..427603 +

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Properties
Property NameValue
TranscriptId598712
TrackFilteredModels2
ProteinId598626
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:426426..427603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598626gene_7401Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598626mRNA_7401-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7401CDS_7401Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7401 ID=mRNA_7401|Name=jgi.p|Nanoce1779_2|598626|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp
ACGAAAGAAAGTCTTCATGGACATTTCGCTCGACAAGGAACCCATAGGAA
AGATTGTTATTGAACTAGCCAATGACATCCTCCCCCTCACCTCGAAAAAT
TTCCTCCTCCTCTGCCAAGGGATTGGCCAGGAGGGAGGGAACGTTGCCAG
CACCACACTAGGTTACAAAGGCAGCAAGATCCACCGCATTGTCAAGGGGG
CAGGGATCGTGGGTGGAGATCTGAGCACCAGCACCAGCACCTCTTCGCCT
TCATTTTCGGAAAAACCGAGGAGGAAGGAACGGGGGGAAGGCAACCATTC
TGCCTTGGGGGCTCGTTTTTTCCATGACGAGGGCTTTATGATTCCTCATT
CAGCTCCTGGTCTGGTGAGTATGGTGAGTGCAGGCGTGCATAGGAATGGG
TCACATTTCTACATCTCGACCCAGGCCTGCCCCCATCTGGATGGGAGGAG
CGTGGTGTTTGGACGGGTGGTGAAGGGGATGGAGGTGGTGGAGAAGGTGG
CGGGCACGTATTCGATTAGAGGGCGGCCTGTAGCTAGTGTGAAGGTTGAG
GAGTCGGGGGTGTTGGAGGAGTAGGGAGGTCAAGAAGAGGAGGATTGAGG
GAGGGACTGGGGGAGGCAAGGAATTAGGTAGGAGCGATGAAGGGTACCAG
GTAAGGTAAAGGAATTGCAATAGGCCCCCAAAAAGAATAAGAGAATTAGA
TGCAACAGGAACATATGCGGGCGATATGCGAGAAGTTATTTTTGAGTGGG
AAACAAAGAAGAGGAAATCTTGGAGACGGCTGTTCTAGGGCGCGTTTGCT
TATGCTTCCAAACGCCAAAATAGACAAAACTACCAGAAACAAAAAAGAAC
AAGTCTGAATATATATATGCCGTGCTTCTGCATACTGCCAAGCTTATCTT
TTAAGAGTGATACGTGAGCTTGTAGTACCTATGTGGTGGGGGAGTGGGGG
AAGTTGGTGGGTGTGACGGAGGCGAGCTTGCGTGTCACGATCGGATAGAA
ACGACATGGAGCAAGATCAGATTGATTAAACTGTATTTTATTCGGCTGGC
ACAAGAGATATGACATGCTCCTATGCGCAGTATGACAGCATTTCCGCTTT
GTCATTGGCCCATGCGGTACTTGAAGTATTGACGCCTGGACCACTTTCGT
ATCTCCCAGCTTAGTCCTCATTTCCACA
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protein sequence of jgi.p|Nanoce1779_2|598626

>mRNA_7401-protein ID=mRNA_7401-protein|Name=jgi.p|Nanoce1779_2|598626|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MDISLDKEPIGKIVIELANDILPLTSKNFLLLCQGIGQEGGNVASTTLGY
KGSKIHRIVKGAGIVGGDLSTSTSTSSPSFSEKPRRKERGEGNHSALGAR
FFHDEGFMIPHSAPGLVSMVSAGVHRNGSHFYISTQACPHLDGRSVVFGR
VVKGMEVVEKVAGTYSIRGRPVASVKVEESGVLEE*
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mRNA from alignment at scaffold_19:426426..427603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7401 ID=mRNA_7401|Name=jgi.p|Nanoce1779_2|598626|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp|location=Sequence derived from alignment at scaffold_19:426426..427603+ (Nannochloropsis oceanica)
ACGAAAGAAAGTCTTCATGGACATTTCGCTCGACAAGGAACCCATAGGAA
AGATTGTTATTGAACTAGCCAATGACATCCTCCCCCTCACCTCGAAAAAT
TTCCTCCTCCTCTGCCAAGGGATTGGCCAGGAGGGAGGGAACGTTGCCAG
CACCACACTAGGTTACAAAGGCAGCAAGATCCACCGCATTGTCAAGGGGG
CAGGGATCGTGGGTGGAGATCTGAGCACCAGCACCAGCACCTCTTCGCCT
TCATTTTCGGAAAAACCGAGGAGGAAGGAACGGGGGGAAGGCAACCATTC
TGCCTTGGGGGCTCGTTTTTTCCATGACGAGGGCTTTATGATTCCTCATT
CAGCTCCTGGTCTGGTGAGTATGGTGAGTGCAGGCGTGCATAGGAATGGG
TCACATTTCTACATCTCGACCCAGGCCTGCCCCCATCTGGATGGGAGGAG
CGTGGTGTTTGGACGGGTGGTGAAGGGGATGGAGGTGGTGGAGAAGGTGG
CGGGCACGTATTCGATTAGAGGGCGGCCTGTAGCTAGTGTGAAGGTTGAG
GAGTCGGGGGTGTTGGAGGAGTAGGGAGGTCAAGAAGAGGAGGATTGAGG
GAGGGACTGGGGGAGGCAAGGAATTAGGTAGGAGCGATGAAGGGTACCAG
GTAAGGTAAAGGAATTGCAATAGGCCCCCAAAAAGAATAAGAGAATTAGA
TGCAACAGGAACATATGCGGGCGATATGCGAGAAGTTATTTTTGAGTGGG
AAACAAAGAAGAGGAAATCTTGGAGACGGCTGTTCTAGGGCGCGTTTGCT
TATGCTTCCAAACGCCAAAATAGACAAAACTACCAGAAACAAAAAAGAAC
AAGTCTGAATATATATATGCCGTGCTTCTGCATACTGCCAAGCTTATCTT
TTAAGAGTGATACGTGAGCTTGTAGTACCTATGTGGTGGGGGAGTGGGGG
AAGTTGGTGGGTGTGACGGAGGCGAGCTTGCGTGTCACGATCGGATAGAA
ACGACATGGAGCAAGATCAGATTGATTAAACTGTATTTTATTCGGCTGGC
ACAAGAGATATGACATGCTCCTATGCGCAGTATGACAGCATTTCCGCTTT
GTCATTGGCCCATGCGGTACTTGAAGTATTGACGCCTGGACCACTTTCGT
ATCTCCCAGCTTAGTCCTCATTTCCACA
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Coding sequence (CDS) from alignment at scaffold_19:426426..427603+

>mRNA_7401 ID=mRNA_7401|Name=jgi.p|Nanoce1779_2|598626|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_19:426426..427603+ (Nannochloropsis oceanica)
ATGGACATTTCGCTCGACAAGGAACCCATAGGAAAGATTGTTATTGAACT
AGCCAATGACATCCTCCCCCTCACCTCGAAAAATTTCCTCCTCCTCTGCC
AAGGGATTGGCCAGGAGGGAGGGAACGTTGCCAGCACCACACTAGGTTAC
AAAGGCAGCAAGATCCACCGCATTGTCAAGGGGGCAGGGATCGTGGGTGG
AGATCTGAGCACCAGCACCAGCACCTCTTCGCCTTCATTTTCGGAAAAAC
CGAGGAGGAAGGAACGGGGGGAAGGCAACCATTCTGCCTTGGGGGCTCGT
TTTTTCCATGACGAGGGCTTTATGATTCCTCATTCAGCTCCTGGTCTGGT
GAGTATGGTGAGTGCAGGCGTGCATAGGAATGGGTCACATTTCTACATCT
CGACCCAGGCCTGCCCCCATCTGGATGGGAGGAGCGTGGTGTTTGGACGG
GTGGTGAAGGGGATGGAGGTGGTGGAGAAGGTGGCGGGCACGTATTCGAT
TAGAGGGCGGCCTGTAGCTAGTGTGAAGGTTGAGGAGTCGGGGGTGTTGG
AGGAGTAG
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Synonyms
Publications