jgi.p|Nanoce1779_2|657565, mRNA_162 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|657565
Unique Name	mRNA_162
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2774
Alignment location	scaffold_3:410875..413648 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	657651
Track	FilteredModels2
ProteinId	657565

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:410875..413648 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657565	gene_162	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657565	mRNA_162-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_162	CDS_162	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:410875..413648+
coding sequence from alignment at scaffold_3:410875..413648+

mRNA sequence

>mRNA_162 ID=mRNA_162|Name=jgi.p|Nanoce1779_2|657565|organism=Nannochloropsis oceanica|type=mRNA|length=2774bp
TGTAGGGCCGTAGTGCACCGTAAGCGTGACAGGTGTAGTGCTTGTCCTTG
ACATGGAGGTATCGATGATAAGATTGTCTCAGTGACAACAAATCATTGCA
TTGCGTTGCTGGCCATGTGGCTACCGACTCACATCGGCTGAGCCTTCGCT
TACCCGGGCCGCGCTACCGCCCCCCACGTTCCTCGCTTCGTTGCGTTTCG
TGTCCAAATCACCCATCCCACACAACCTATACACTCACAGGCGGCGGCAT
GTTTGCCTTCATGACAGGAAATGGAAAGAAGCGGTCCCGTGGAAGTGGCA
GCAGTGGGAGCGGCGGCTGGTTTGGAGGAGGGGAGGATAGTAGCGGCGGC
AAAGTGAACGTCCAGACCTCGTCATTGGCTTCTGCGGGCGCTGCCTCTGG
TACGAATGCCGGCAACAACAAACGACACCTTTCCGAAATTGAACGGAGGC
GACAGGACAGCATCCGAGAGAACCAGGAATTCATCAAGCAGCTCGGACTA
ACGGATGTCTTGACGGGCATGCGGGAGGAGCAAGCGCCAGCAGCAGCACG
AGCAGCAAGCGCGCCCTCCTTAGTCGATGGTGATGCTGGTCGGCAAGCCC
GGGGCGGACCTTTCAGCATTTCAGCTGCGCCAACACCAACCCTCGAGCAA
GTTAAAGCCAAATGGGTCGGCCGCGAAGCCCAAATTAAGCTGCTAGCCCG
CCTCCTCCCCTCCGTAGAAGAACCGTGCTCCTCTTCCTCCGTCCTCCTAG
TGCACGGGCCGAGCGGTGGCGGCAAGACAGGCGTCGTAGCCGATGTCCTC
CGATCATGTAAGCTCCCACATGCATTGATTCGTGGGGTGGAGCACCCGAC
AGCCCGGTCTTTGTACAGTACGATAGCTGCTACGTGGTTAAGACATGTAG
AGATGCAGGCGCAAGCACTAGGGTTGGAAGGGGTGGGTTATATGGAGGTA
GATGAGTTTGACGATGATCGACAGCGGGAATATCGAGTGTTAGCTAGGAG
GGAACGGAGGGAGGCGAGGCAACGGCAGCGGCAACTGCGGAAGCAAGGAA
AGGGAAGGATGGAGGAGGAGGAGGTCGAGGGGGGGGAGGACGAGGGGGGA
ACCAGTGGGGGTAGTGAGGGTTATGAGGACGATGAGGAGGAAGACGAGGA
GGAGGAGGACGACGATGACGAAGATCCCTACTATGCACAGAGAAGCTCGG
TGCAGCAGGTGTCGGCGGGAGTGGGTGCAGCCACCGGAAGTCATCTCATT
CCTCTCCCCAATCGGTGCGCGACGGCCGCAGGTCTTCTCCACCTCTTGCG
TTCCTGGCGCGGAACTCAGCAACAACAGCCACAGCAGCAGCAGTCGGCTC
GAAAAGAGGGATCGGTTGATTTGTATTCTACTTTTGCAGGAGGAGGAGGA
GGAGGAGGAGGCGGAGGGGCAGCAGCAACAGGCACTGTGCCCTTCATCAT
CGTCTTGGACAGCGCCGACCGCCTTCCCCGTGGTGCCTCCTTCGCCCGTC
ACGAGCTTGCAGAACTCCCCGCAATGCTTGCAGGGCCACAAGGGAAGGAT
CGACATAATCCGGGGCATGGAGGAGCAGGAGCCGTGGTGGCGTTAACTGT
CATTTTGATTTCAGAGACCCCGGTGGTGGTGCCGGGTTCGCTAGAAGCTG
CCTTGGCATTGAACGTACCTTTCCCCGCCTATACCAAGGTGCAAGCAACG
GCAATTTTGTTGAGGAGTTTGAGGGTAGCGGCGGGGCTTCCTCCCTCTCC
TGAGGCTATGGAGGGAGGGAGGGAGGAAGGGGAGGAGGAGAGGGAGTTTG
AGTCGTTGGTGGCGGGGTTTGTGAATGTTTTAGTCGCCTCTTTGTACAGC
TCGACAAGGGATGTGAGAGAAATGAGGAGGATGGCGGTGCTGCTATCCGA
AAAGTACTTGGAGCCGGTCTTGGCGAAGGGAGGAAGGGAGGAAGAGGAGG
AGAAAGGGAAGGAGAATCAGGCAGAAAGGCGGAGTATTAGTAGTGGAGGA
GGGAGGGAGGGAGGAAAGCTGCCAGGGCACCTAGCGTTATTTGATCGGGT
GCGGCCTTTGATTCAACGGGCCGTACACAGCTGTTTACACATGCCTGCTG
AGCCGTTGGAAAAATCTAATAGCCTGCCTCCCCTCCCCCCCTCATTGTCC
TCGTCGTCCTCGTCATCCTCCTCCCCCTTTTCCCCCACCATCTCCAATGG
AGTACAAAAATCATCTTCCTCTTTCATACCTCAACAACCGCACCAGCAGG
AGCACCAGCACCAAGCTCTCCTCCGATATGAGCTTCCCAAAATGGCTCTC
TACCTCCTCTTGGCCTCCTTCCTCGCCTCTCACGTCTCCCCTAATACCGA
CCTCCAGCTGTTCGCCGTCAAATCTTCCTCTTCCTCCTCCTCTTCCACAA
CCACCCGGGGCACGAAACGGAACAAACGCACGGCCACAGCAGAAGACCGA
GCTGCCGAAGCCCAAGAAGCAGAGACAGAGAAGGATGGTGCGCGGACATT
TTCACTAGAGAGGTTGTTGTCGATTTTTACGTGCTTGGTGGCCTTGACAC
GGGCGAGTGGTGCAAGCTATGCGAACAACACGGGGACAACTGAGTTATTT
GCTCAGATCAATACCTTAGTAAGGCATCGGTTATTACTGAGGGTGCGGGG
GGGCAGTGGGGAGCTGGGAGGGATGAAGTTTAAATGCAATGTGGACGAGG
GACTCGTGCGGGTTGTGGCCACCGACTTAGAGGTGGCGTTGGGGCATTAC
TTGGAGAGGGGGGCCAGAGGATGA

protein sequence of jgi.p|Nanoce1779_2|657565

>mRNA_162-protein ID=mRNA_162-protein|Name=jgi.p|Nanoce1779_2|657565|organism=Nannochloropsis oceanica|type=polypeptide|length=842bp
MFAFMTGNGKKRSRGSGSSGSGGWFGGGEDSSGGKVNVQTSSLASAGAAS
GTNAGNNKRHLSEIERRRQDSIRENQEFIKQLGLTDVLTGMREEQAPAAA
RAASAPSLVDGDAGRQARGGPFSISAAPTPTLEQVKAKWVGREAQIKLLA
RLLPSVEEPCSSSSVLLVHGPSGGGKTGVVADVLRSCKLPHALIRGVEHP
TARSLYSTIAATWLRHVEMQAQALGLEGVGYMEVDEFDDDRQREYRVLAR
RERREARQRQRQLRKQGKGRMEEEEVEGGEDEGGTSGGSEGYEDDEEEDE
EEEDDDDEDPYYAQRSSVQQVSAGVGAATGSHLIPLPNRCATAAGLLHLL
RSWRGTQQQQPQQQQSARKEGSVDLYSTFAGGGGGGGGGGAAATGTVPFI
IVLDSADRLPRGASFARHELAELPAMLAGPQGKDRHNPGHGGAGAVVALT
VILISETPVVVPGSLEAALALNVPFPAYTKVQATAILLRSLRVAAGLPPS
PEAMEGGREEGEEEREFESLVAGFVNVLVASLYSSTRDVREMRRMAVLLS
EKYLEPVLAKGGREEEEEKGKENQAERRSISSGGGREGGKLPGHLALFDR
VRPLIQRAVHSCLHMPAEPLEKSNSLPPLPPSLSSSSSSSSSPFSPTISN
GVQKSSSSFIPQQPHQQEHQHQALLRYELPKMALYLLLASFLASHVSPNT
DLQLFAVKSSSSSSSSTTTRGTKRNKRTATAEDRAAEAQEAETEKDGART
FSLERLLSIFTCLVALTRASGASYANNTGTTELFAQINTLVRHRLLLRVR
GGSGELGGMKFKCNVDEGLVRVVATDLEVALGHYLERGARG*

mRNA from alignment at scaffold_3:410875..413648+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_162 ID=mRNA_162|Name=jgi.p|Nanoce1779_2|657565|organism=Nannochloropsis oceanica|type=mRNA|length=2774bp|location=Sequence derived from alignment at scaffold_3:410875..413648+ (Nannochloropsis oceanica)
TGTAGGGCCGTAGTGCACCGTAAGCGTGACAGGTGTAGTGCTTGTCCTTG
ACATGGAGGTATCGATGATAAGATTGTCTCAGTGACAACAAATCATTGCA
TTGCGTTGCTGGCCATGTGGCTACCGACTCACATCGGCTGAGCCTTCGCT
TACCCGGGCCGCGCTACCGCCCCCCACGTTCCTCGCTTCGTTGCGTTTCG
TGTCCAAATCACCCATCCCACACAACCTATACACTCACAGGCGGCGGCAT
GTTTGCCTTCATGACAGGAAATGGAAAGAAGCGGTCCCGTGGAAGTGGCA
GCAGTGGGAGCGGCGGCTGGTTTGGAGGAGGGGAGGATAGTAGCGGCGGC
AAAGTGAACGTCCAGACCTCGTCATTGGCTTCTGCGGGCGCTGCCTCTGG
TACGAATGCCGGCAACAACAAACGACACCTTTCCGAAATTGAACGGAGGC
GACAGGACAGCATCCGAGAGAACCAGGAATTCATCAAGCAGCTCGGACTA
ACGGATGTCTTGACGGGCATGCGGGAGGAGCAAGCGCCAGCAGCAGCACG
AGCAGCAAGCGCGCCCTCCTTAGTCGATGGTGATGCTGGTCGGCAAGCCC
GGGGCGGACCTTTCAGCATTTCAGCTGCGCCAACACCAACCCTCGAGCAA
GTTAAAGCCAAATGGGTCGGCCGCGAAGCCCAAATTAAGCTGCTAGCCCG
CCTCCTCCCCTCCGTAGAAGAACCGTGCTCCTCTTCCTCCGTCCTCCTAG
TGCACGGGCCGAGCGGTGGCGGCAAGACAGGCGTCGTAGCCGATGTCCTC
CGATCATGTAAGCTCCCACATGCATTGATTCGTGGGGTGGAGCACCCGAC
AGCCCGGTCTTTGTACAGTACGATAGCTGCTACGTGGTTAAGACATGTAG
AGATGCAGGCGCAAGCACTAGGGTTGGAAGGGGTGGGTTATATGGAGGTA
GATGAGTTTGACGATGATCGACAGCGGGAATATCGAGTGTTAGCTAGGAG
GGAACGGAGGGAGGCGAGGCAACGGCAGCGGCAACTGCGGAAGCAAGGAA
AGGGAAGGATGGAGGAGGAGGAGGTCGAGGGGGGGGAGGACGAGGGGGGA
ACCAGTGGGGGTAGTGAGGGTTATGAGGACGATGAGGAGGAAGACGAGGA
GGAGGAGGACGACGATGACGAAGATCCCTACTATGCACAGAGAAGCTCGG
TGCAGCAGGTGTCGGCGGGAGTGGGTGCAGCCACCGGAAGTCATCTCATT
CCTCTCCCCAATCGGTGCGCGACGGCCGCAGGTCTTCTCCACCTCTTGCG
TTCCTGGCGCGGAACTCAGCAACAACAGCCACAGCAGCAGCAGTCGGCTC
GAAAAGAGGGATCGGTTGATTTGTATTCTACTTTTGCAGGAGGAGGAGGA
GGAGGAGGAGGCGGAGGGGCAGCAGCAACAGGCACTGTGCCCTTCATCAT
CGTCTTGGACAGCGCCGACCGCCTTCCCCGTGGTGCCTCCTTCGCCCGTC
ACGAGCTTGCAGAACTCCCCGCAATGCTTGCAGGGCCACAAGGGAAGGAT
CGACATAATCCGGGGCATGGAGGAGCAGGAGCCGTGGTGGCGTTAACTGT
CATTTTGATTTCAGAGACCCCGGTGGTGGTGCCGGGTTCGCTAGAAGCTG
CCTTGGCATTGAACGTACCTTTCCCCGCCTATACCAAGGTGCAAGCAACG
GCAATTTTGTTGAGGAGTTTGAGGGTAGCGGCGGGGCTTCCTCCCTCTCC
TGAGGCTATGGAGGGAGGGAGGGAGGAAGGGGAGGAGGAGAGGGAGTTTG
AGTCGTTGGTGGCGGGGTTTGTGAATGTTTTAGTCGCCTCTTTGTACAGC
TCGACAAGGGATGTGAGAGAAATGAGGAGGATGGCGGTGCTGCTATCCGA
AAAGTACTTGGAGCCGGTCTTGGCGAAGGGAGGAAGGGAGGAAGAGGAGG
AGAAAGGGAAGGAGAATCAGGCAGAAAGGCGGAGTATTAGTAGTGGAGGA
GGGAGGGAGGGAGGAAAGCTGCCAGGGCACCTAGCGTTATTTGATCGGGT
GCGGCCTTTGATTCAACGGGCCGTACACAGCTGTTTACACATGCCTGCTG
AGCCGTTGGAAAAATCTAATAGCCTGCCTCCCCTCCCCCCCTCATTGTCC
TCGTCGTCCTCGTCATCCTCCTCCCCCTTTTCCCCCACCATCTCCAATGG
AGTACAAAAATCATCTTCCTCTTTCATACCTCAACAACCGCACCAGCAGG
AGCACCAGCACCAAGCTCTCCTCCGATATGAGCTTCCCAAAATGGCTCTC
TACCTCCTCTTGGCCTCCTTCCTCGCCTCTCACGTCTCCCCTAATACCGA
CCTCCAGCTGTTCGCCGTCAAATCTTCCTCTTCCTCCTCCTCTTCCACAA
CCACCCGGGGCACGAAACGGAACAAACGCACGGCCACAGCAGAAGACCGA
GCTGCCGAAGCCCAAGAAGCAGAGACAGAGAAGGATGGTGCGCGGACATT
TTCACTAGAGAGGTTGTTGTCGATTTTTACGTGCTTGGTGGCCTTGACAC
GGGCGAGTGGTGCAAGCTATGCGAACAACACGGGGACAACTGAGTTATTT
GCTCAGATCAATACCTTAGTAAGGCATCGGTTATTACTGAGGGTGCGGGG
GGGCAGTGGGGAGCTGGGAGGGATGAAGTTTAAATGCAATGTGGACGAGG
GACTCGTGCGGGTTGTGGCCACCGACTTAGAGGTGGCGTTGGGGCATTAC
TTGGAGAGGGGGGCCAGAGGATGA

Coding sequence (CDS) from alignment at scaffold_3:410875..413648+

>mRNA_162 ID=mRNA_162|Name=jgi.p|Nanoce1779_2|657565|organism=Nannochloropsis oceanica|type=CDS|length=2526bp|location=Sequence derived from alignment at scaffold_3:410875..413648+ (Nannochloropsis oceanica)
ATGTTTGCCTTCATGACAGGAAATGGAAAGAAGCGGTCCCGTGGAAGTGG
CAGCAGTGGGAGCGGCGGCTGGTTTGGAGGAGGGGAGGATAGTAGCGGCG
GCAAAGTGAACGTCCAGACCTCGTCATTGGCTTCTGCGGGCGCTGCCTCT
GGTACGAATGCCGGCAACAACAAACGACACCTTTCCGAAATTGAACGGAG
GCGACAGGACAGCATCCGAGAGAACCAGGAATTCATCAAGCAGCTCGGAC
TAACGGATGTCTTGACGGGCATGCGGGAGGAGCAAGCGCCAGCAGCAGCA
CGAGCAGCAAGCGCGCCCTCCTTAGTCGATGGTGATGCTGGTCGGCAAGC
CCGGGGCGGACCTTTCAGCATTTCAGCTGCGCCAACACCAACCCTCGAGC
AAGTTAAAGCCAAATGGGTCGGCCGCGAAGCCCAAATTAAGCTGCTAGCC
CGCCTCCTCCCCTCCGTAGAAGAACCGTGCTCCTCTTCCTCCGTCCTCCT
AGTGCACGGGCCGAGCGGTGGCGGCAAGACAGGCGTCGTAGCCGATGTCC
TCCGATCATGTAAGCTCCCACATGCATTGATTCGTGGGGTGGAGCACCCG
ACAGCCCGGTCTTTGTACAGTACGATAGCTGCTACGTGGTTAAGACATGT
AGAGATGCAGGCGCAAGCACTAGGGTTGGAAGGGGTGGGTTATATGGAGG
TAGATGAGTTTGACGATGATCGACAGCGGGAATATCGAGTGTTAGCTAGG
AGGGAACGGAGGGAGGCGAGGCAACGGCAGCGGCAACTGCGGAAGCAAGG
AAAGGGAAGGATGGAGGAGGAGGAGGTCGAGGGGGGGGAGGACGAGGGGG
GAACCAGTGGGGGTAGTGAGGGTTATGAGGACGATGAGGAGGAAGACGAG
GAGGAGGAGGACGACGATGACGAAGATCCCTACTATGCACAGAGAAGCTC
GGTGCAGCAGGTGTCGGCGGGAGTGGGTGCAGCCACCGGAAGTCATCTCA
TTCCTCTCCCCAATCGGTGCGCGACGGCCGCAGGTCTTCTCCACCTCTTG
CGTTCCTGGCGCGGAACTCAGCAACAACAGCCACAGCAGCAGCAGTCGGC
TCGAAAAGAGGGATCGGTTGATTTGTATTCTACTTTTGCAGGAGGAGGAG
GAGGAGGAGGAGGCGGAGGGGCAGCAGCAACAGGCACTGTGCCCTTCATC
ATCGTCTTGGACAGCGCCGACCGCCTTCCCCGTGGTGCCTCCTTCGCCCG
TCACGAGCTTGCAGAACTCCCCGCAATGCTTGCAGGGCCACAAGGGAAGG
ATCGACATAATCCGGGGCATGGAGGAGCAGGAGCCGTGGTGGCGTTAACT
GTCATTTTGATTTCAGAGACCCCGGTGGTGGTGCCGGGTTCGCTAGAAGC
TGCCTTGGCATTGAACGTACCTTTCCCCGCCTATACCAAGGTGCAAGCAA
CGGCAATTTTGTTGAGGAGTTTGAGGGTAGCGGCGGGGCTTCCTCCCTCT
CCTGAGGCTATGGAGGGAGGGAGGGAGGAAGGGGAGGAGGAGAGGGAGTT
TGAGTCGTTGGTGGCGGGGTTTGTGAATGTTTTAGTCGCCTCTTTGTACA
GCTCGACAAGGGATGTGAGAGAAATGAGGAGGATGGCGGTGCTGCTATCC
GAAAAGTACTTGGAGCCGGTCTTGGCGAAGGGAGGAAGGGAGGAAGAGGA
GGAGAAAGGGAAGGAGAATCAGGCAGAAAGGCGGAGTATTAGTAGTGGAG
GAGGGAGGGAGGGAGGAAAGCTGCCAGGGCACCTAGCGTTATTTGATCGG
GTGCGGCCTTTGATTCAACGGGCCGTACACAGCTGTTTACACATGCCTGC
TGAGCCGTTGGAAAAATCTAATAGCCTGCCTCCCCTCCCCCCCTCATTGT
CCTCGTCGTCCTCGTCATCCTCCTCCCCCTTTTCCCCCACCATCTCCAAT
GGAGTACAAAAATCATCTTCCTCTTTCATACCTCAACAACCGCACCAGCA
GGAGCACCAGCACCAAGCTCTCCTCCGATATGAGCTTCCCAAAATGGCTC
TCTACCTCCTCTTGGCCTCCTTCCTCGCCTCTCACGTCTCCCCTAATACC
GACCTCCAGCTGTTCGCCGTCAAATCTTCCTCTTCCTCCTCCTCTTCCAC
AACCACCCGGGGCACGAAACGGAACAAACGCACGGCCACAGCAGAAGACC
GAGCTGCCGAAGCCCAAGAAGCAGAGACAGAGAAGGATGGTGCGCGGACA
TTTTCACTAGAGAGGTTGTTGTCGATTTTTACGTGCTTGGTGGCCTTGAC
ACGGGCGAGTGGTGCAAGCTATGCGAACAACACGGGGACAACTGAGTTAT
TTGCTCAGATCAATACCTTAGTAAGGCATCGGTTATTACTGAGGGTGCGG
GGGGGCAGTGGGGAGCTGGGAGGGATGAAGTTTAAATGCAATGTGGACGA
GGGACTCGTGCGGGTTGTGGCCACCGACTTAGAGGTGGCGTTGGGGCATT
ACTTGGAGAGGGGGGCCAGAGGATGA

Synonyms

Publications