jgi.p|Nanoce1779_2|607932, mRNA_9054 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607932
Unique NamemRNA_9054
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1409
Alignment locationscaffold_40:19485..20893 -

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Properties
Property NameValue
TranscriptId608018
TrackFilteredModels2
ProteinId607932
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:19485..20893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607932gene_9054Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607932mRNA_9054-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9054CDS_9054Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9054 ID=mRNA_9054|Name=jgi.p|Nanoce1779_2|607932|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
AGCTATCAATTGCACAAAGACACAAGCAATAACGTACAGCAGCTACATGA
AGTTGAGTAGCACCACAGGCGCCAGCATCATCGGTATCACCTCTCCGGCG
CGCATTCTTACCCTTACATCTCTGGGCCTCTGGCTTTTAAGCTTTGGTCC
TCCGAATGCTCAGGGTCACATGATGATGGTTGCCTCACCCTTTAATGGGC
TTGGCCGAGGCGACAGGTAAGCCACTCTTTTCCCACCTTGCGCTAGAGGA
TACCGATTACCCCGCTGCCTCCCGTCATCCAAATATCTTCACCTTGAGCA
CAGAATAGGGCTTCTAATAGTCTAGTCTCTCAACAAATAGGGCTCTCGGA
CGCTTCACACGTATGGTGGACGAGCTAGTGAACGAGCAAAACCTCCTGCC
ACAGACCGTACTTCCTCTTTGGCGGAAGGTGATACAGCATCAGACGACTG
ACATGACCCAGCAAAATCCCGCCATTGGCATCATTACGACCTTCTGCGCC
GATGCAATTGAGGTACGACACGTGATCAAGCCAGAACAGGAAGAACATTA
TAGTCAGAATTTCAAACAGAAAGTAGGGAAGGAATTGGTGTTGGGAAAGC
TGTTGGTGGAATGAAAAAACAATGATTTTCAGGCTGGTGGGCAGGCAGGG
CAGCATAGAATTTGGATTAGTAACGCAGAAAAGGGTTTAGGGAGAAGGAG
GATGGGGATGGGAAAAGAATGTACAATCAATTTGTCAGTGTCGATCAGGG
AGGTACAAGGGTAAAAATAAAACAGAATGTGTCACGAATCAATCCATATC
TATTCCAGTAATGCTAACAAAACCCGACCCCATTCCCATCCATTTTTCAA
ACCTCTTCACTGTACACAGACTCAAAATACCTACATCATTTCCGCCGATC
TACCAGGGGTCAAGCGAGATGATATTCGGATTGCCTTCCTTCAGGAGGGC
GTCCTGTCTATCACAGCTGAGCGCCAGAGCTTATACGAGGTAACTTCCAA
GGCGACAGAGAATGGAGGGGCCGGGGATATAGGGAAGGCACGGCGGTCTC
CGGGCTGGACGAATCAGCAGCAAGAAATTGACGTGTCGAAGGAAGCTGCG
GATGCCTTTCCCAAGTTTTTAATGCGCGAGGTGACGTACGGCAAAACAAC
GCGCTCATTCAAACTGCCGCCGGATGCCGACATTGACTCAACCACAGCAG
GGTTTGAGAACGGAGTGCTGATTGTTACAATGAAAAAGCGCGAGGTACCG
AAAGAAAAGCTGGTCATGATCAAATGATCGAGAGAAAAAGCCAAGATGTT
CCCATGACAAATGAAAGGAGATGGTCAATGGTCCGATCATAATGGTTTCA
TTAACCGTTTCGTTACCAGAGCATGAAAAGGAAAGAAAAAAGAAAGCGCG
ACGTATGGA
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protein sequence of jgi.p|Nanoce1779_2|607932

>mRNA_9054-protein ID=mRNA_9054-protein|Name=jgi.p|Nanoce1779_2|607932|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MCHESIHIYSSNANKTRPHSHPFFKPLHCTQTQNTYIISADLPGVKRDDI
RIAFLQEGVLSITAERQSLYEVTSKATENGGAGDIGKARRSPGWTNQQQE
IDVSKEAADAFPKFLMREVTYGKTTRSFKLPPDADIDSTTAGFENGVLIV
TMKKREVPKEKLVMIK*
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mRNA from alignment at scaffold_40:19485..20893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9054 ID=mRNA_9054|Name=jgi.p|Nanoce1779_2|607932|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp|location=Sequence derived from alignment at scaffold_40:19485..20893- (Nannochloropsis oceanica)
AGCTATCAATTGCACAAAGACACAAGCAATAACGTACAGCAGCTACATGA
AGTTGAGTAGCACCACAGGCGCCAGCATCATCGGTATCACCTCTCCGGCG
CGCATTCTTACCCTTACATCTCTGGGCCTCTGGCTTTTAAGCTTTGGTCC
TCCGAATGCTCAGGGTCACATGATGATGGTTGCCTCACCCTTTAATGGGC
TTGGCCGAGGCGACAGGTAAGCCACTCTTTTCCCACCTTGCGCTAGAGGA
TACCGATTACCCCGCTGCCTCCCGTCATCCAAATATCTTCACCTTGAGCA
CAGAATAGGGCTTCTAATAGTCTAGTCTCTCAACAAATAGGGCTCTCGGA
CGCTTCACACGTATGGTGGACGAGCTAGTGAACGAGCAAAACCTCCTGCC
ACAGACCGTACTTCCTCTTTGGCGGAAGGTGATACAGCATCAGACGACTG
ACATGACCCAGCAAAATCCCGCCATTGGCATCATTACGACCTTCTGCGCC
GATGCAATTGAGGTACGACACGTGATCAAGCCAGAACAGGAAGAACATTA
TAGTCAGAATTTCAAACAGAAAGTAGGGAAGGAATTGGTGTTGGGAAAGC
TGTTGGTGGAATGAAAAAACAATGATTTTCAGGCTGGTGGGCAGGCAGGG
CAGCATAGAATTTGGATTAGTAACGCAGAAAAGGGTTTAGGGAGAAGGAG
GATGGGGATGGGAAAAGAATGTACAATCAATTTGTCAGTGTCGATCAGGG
AGGTACAAGGGTAAAAATAAAACAGAATGTGTCACGAATCAATCCATATC
TATTCCAGTAATGCTAACAAAACCCGACCCCATTCCCATCCATTTTTCAA
ACCTCTTCACTGTACACAGACTCAAAATACCTACATCATTTCCGCCGATC
TACCAGGGGTCAAGCGAGATGATATTCGGATTGCCTTCCTTCAGGAGGGC
GTCCTGTCTATCACAGCTGAGCGCCAGAGCTTATACGAGGTAACTTCCAA
GGCGACAGAGAATGGAGGGGCCGGGGATATAGGGAAGGCACGGCGGTCTC
CGGGCTGGACGAATCAGCAGCAAGAAATTGACGTGTCGAAGGAAGCTGCG
GATGCCTTTCCCAAGTTTTTAATGCGCGAGGTGACGTACGGCAAAACAAC
GCGCTCATTCAAACTGCCGCCGGATGCCGACATTGACTCAACCACAGCAG
GGTTTGAGAACGGAGTGCTGATTGTTACAATGAAAAAGCGCGAGGTACCG
AAAGAAAAGCTGGTCATGATCAAATGATCGAGAGAAAAAGCCAAGATGTT
CCCATGACAAATGAAAGGAGATGGTCAATGGTCCGATCATAATGGTTTCA
TTAACCGTTTCGTTACCAGAGCATGAAAAGGAAAGAAAAAAGAAAGCGCG
ACGTATGGA
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Coding sequence (CDS) from alignment at scaffold_40:19485..20893-

>mRNA_9054 ID=mRNA_9054|Name=jgi.p|Nanoce1779_2|607932|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_40:19485..20893- (Nannochloropsis oceanica)
ATGTGTCACGAATCAATCCATATCTATTCCAGTAATGCTAACAAAACCCG
ACCCCATTCCCATCCATTTTTCAAACCTCTTCACTGTACACAGACTCAAA
ATACCTACATCATTTCCGCCGATCTACCAGGGGTCAAGCGAGATGATATT
CGGATTGCCTTCCTTCAGGAGGGCGTCCTGTCTATCACAGCTGAGCGCCA
GAGCTTATACGAGGTAACTTCCAAGGCGACAGAGAATGGAGGGGCCGGGG
ATATAGGGAAGGCACGGCGGTCTCCGGGCTGGACGAATCAGCAGCAAGAA
ATTGACGTGTCGAAGGAAGCTGCGGATGCCTTTCCCAAGTTTTTAATGCG
CGAGGTGACGTACGGCAAAACAACGCGCTCATTCAAACTGCCGCCGGATG
CCGACATTGACTCAACCACAGCAGGGTTTGAGAACGGAGTGCTGATTGTT
ACAATGAAAAAGCGCGAGGTACCGAAAGAAAAGCTGGTCATGATCAAATG
A
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Synonyms
Publications