jgi.p|Nanoce1779_2|611002, mRNA_10564 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611002
Unique Name	mRNA_10564
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1551
Alignment location	scaffold_53:89733..91618 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611088
Track	FilteredModels2
ProteinId	611002

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_53	supercontig	scaffold_53:89733..91618 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611002	gene_10564	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611002	mRNA_10564-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10564	CDS_10564	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_53:89733..91618+
coding sequence from alignment at scaffold_53:89733..91618+

mRNA sequence

>mRNA_10564 ID=mRNA_10564|Name=jgi.p|Nanoce1779_2|611002|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
CAGAGTACTGCCGGGCCTCACGAGAAATCGCCTACCCATCTACCATGCTT
CGCCCCTCAATCCTCTCGGGCCTAGCGCTCCTTGCGACTCTGCGGTCGGT
ATTGGTACGTATTTCCTCCCCCCCTTTCTTTTCCTACCCGACTCACTCCT
TGATTGCCCTCTGTCCACATCTAATTCCAAAGGCACAAGGAAAACGCCAG
TGGGTGGAGGGCTACCCTGTCCCAACCAACAACCAGAGCGATCCCTCCAG
CCCCCCTTTCGCCCAGGGCGTCCAGCTTGACGATATCGTCTACCAATCTT
TCGAGACCAAGGCCAAATCCCACCGGGCGGGCGACATTATCCGGCTGTAC
ACGACTTTCAAGCTCAATCGATGGCCCGAGGGCGCCACCTCTATTTACTG
CGCGATGCGCAACTACAACGGTACCGCCACTGGGGGCGGCTCCAACTTCG
CCATCAAAAACCGCAGAGAATTCTTCCACAAGAAGAAGTACGGGACAAAC
TACCAGATCGCCTTGTCCGAGACGGACGGCAAGATCGTGTGGGATTTTCA
AAGGGCGGGGGAGTACCTTCAGGTCGGCCACACTTGGACGCTCTACGCCA
AGGTCGTGATGAACAAGAACGTGGACATTAACGTTAATACCTGGCGAGCC
TACTGCGAGACCAAGCAGGACGACCCCTTAAAAAGTTGGTACTATTTCAA
GAGCTGGATGGAATTGCCTGTCACTCCGGCAGGCCGTGTAAAGAAGTCTA
CGGGCCCGGTCGGCCCTGGCCAGAAGGCCTACAGGAAGTTTATCAGGAGG
GAGAAGAGGATGAAGGCCAAGAAGACCGGGGCCTCCAAAGAATAAAGTTA
AGGCTCCCTGTTCGGGAACTAACGAGAGGCTGTCCTCCTGGACATGTGCA
ATAGCCCGAAGATCCAAAAAGGATACACTGCCAAAGTATTTCATGCGATG
AGGATTGCTTGATGTAAAGTAGGGAGAGGTTAGTAGGAGAGAAAGTTGGT
GCTTTGTGCGTGTGTGTCTGTATTGCATGCATGTGGATGAAGTAGGGGCC
ACATTACAAGAAGAGAAGAAATAGAGAAGGAGGTCAGGAAATCGTGTTCT
TTTTTGAAAAAAGGTTTCATTTTTCACTTGTTTCCGTCATCATGCCATCG
ACCCTTAGCGTGGCTCCTCTAATCATGCGTCTGTCTTTCTGATTTATCCA
TTCATTCTTTCACTCAAGTCTTCGCTGCCCTCACTGCTCCATCCCCAGAT
CCTCCCTTTAACATACCCGGATCCTCCTTTAGTTTTACAGAAGAAATCAA
TGTCTCTATCGTCATCTACAAGTCCTCACTTTCCTTCATTCACCCATCAT
TGCCTTTTGTGCATCACATCGAAAAAAGAGAAAACAAGTATATGATAGAG
CTTCACAAGAAAAGAGATGAAAAAGCGAGACGGCGAAGTAGAACACCAGA
GAAGGAAAACGATGCACTCTTGCCCGAAGAGTAGTGGAATAGAGAAAAAG
AATATAAAGTAAAATAATCAGAGAAAAAAGGAAGGCAAGAGACATTCACC
A

protein sequence of jgi.p|Nanoce1779_2|611002

>mRNA_10564-protein ID=mRNA_10564-protein|Name=jgi.p|Nanoce1779_2|611002|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MLRPSILSGLALLATLRSVLVRISSPPFFSYPTHSLIALCPHLIPKAQGK
RQWVEGYPVPTNNQSDPSSPPFAQGVQLDDIVYQSFETKAKSHRAGDIIR
LYTTFKLNRWPEGATSIYCAMRNYNGTATGGGSNFAIKNRREFFHKKKYG
TNYQIALSETDGKIVWDFQRAGEYLQVGHTWTLYAKVVMNKNVDINVNTW
RAYCETKQDDPLKSWYYFKSWMELPVTPAGRVKKSTGPVGPGQKAYRKFI
RREKRMKAKKTGASKE*

mRNA from alignment at scaffold_53:89733..91618+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10564 ID=mRNA_10564|Name=jgi.p|Nanoce1779_2|611002|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at scaffold_53:89733..91618+ (Nannochloropsis oceanica)
CAGAGTACTGCCGGGCCTCACGAGAAATCGCCTACCCATCTACCATGCTT
CGCCCCTCAATCCTCTCGGGCCTAGCGCTCCTTGCGACTCTGCGGTCGGT
ATTGGTACGTATTTCCTCCCCCCCTTTCTTTTCCTACCCGACTCACTCCT
TGATTGCCCTCTGTCCACATCTAATTCCAAAGGCACAAGGAAAACGCCAG
TGGGTGGAGGGCTACCCTGTCCCAACCAACAACCAGAGCGATCCCTCCAG
CCCCCCTTTCGCCCAGGGCGTCCAGCTTGACGATATCGTCTACCAATCTT
TCGAGACCAAGGCCAAATCCCACCGGGCGGGCGACATTATCCGGCTGTAC
ACGACTTTCAAGCTCAATCGATGGCCCGAGGGCGCCACCTCTATTTACTG
CGCGGTACGTGTATCTGTATGTGCATGCCCTGTCCCTCTCGTCGTCCTTT
CACTCGACTTAATCTTGATCACCTAACTTTTCATCCCCCCGCCCTCAGAT
GCGCAACTACAACGGTACCGCCACTGGGGGCGGCTCCAACTTCGCCATCA
AAAACCGCAGAGAATTCTTCCACAAGAAGAAGTACGGGACAAACTACCAG
ATCGCCTTGTCCGAGACGGACGGCAAGATCGTGTGGGATTTTCAAAGGGC
GGGGGAGTACCTTCAGGTCGGCCACACTTGGACGCTCTACGCCAAGGTCG
TGATGAACAAGAACGTGGACATTAACGTTAATACCTGGCGAGCCTACTGC
GAGACCAAGCAGGACGACCCCTTAAAAAGTTGGTACTATTTCAAGAGCTG
GATGGAAGTAAGTAACTTGCAGATTTCTGGCTCGCCTCAGACCCGTACGC
ATTAGCTCTTTCTCTTGCATTCGCGAGCGGAAATATGTCTTTCTCTCGTC
TCGTCCCTTGCATCTACCTTATTCCCAACCTTCCCTCCTTTTCTCCTGCT
CATGTCTTTCTCTCGTCTCGTCCCTTGCATCTACCTTATTCCCAACCTTC
CCTCCTTTTCTCCTGCTCTCCATTCCTACCCCCTCCCCACATATTTAGTT
GCCTGTCACTCCGGCAGGCCGTGTAAAGAAGTCTACGGGCCCGGTCGGCC
CTGGCCAGAAGGCCTACAGGAAGTTTATCAGGAGGGAGAAGAGGATGAAG
GCCAAGAAGACCGGGGCCTCCAAAGAATAAAGTTAAGGCTCCCTGTTCGG
GAACTAACGAGAGGCTGTCCTCCTGGACATGTGCAATAGCCCGAAGATCC
AAAAAGGATACACTGCCAAAGTATTTCATGCGATGAGGATTGCTTGATGT
AAAGTAGGGAGAGGTTAGTAGGAGAGAAAGTTGGTGCTTTGTGCGTGTGT
GTCTGTATTGCATGCATGTGGATGAAGTAGGGGCCACATTACAAGAAGAG
AAGAAATAGAGAAGGAGGTCAGGAAATCGTGTTCTTTTTTGAAAAAAGGT
TTCATTTTTCACTTGTTTCCGTCATCATGCCATCGACCCTTAGCGTGGCT
CCTCTAATCATGCGTCTGTCTTTCTGATTTATCCATTCATTCTTTCACTC
AAGTCTTCGCTGCCCTCACTGCTCCATCCCCAGATCCTCCCTTTAACATA
CCCGGATCCTCCTTTAGTTTTACAGAAGAAATCAATGTCTCTATCGTCAT
CTACAAGTCCTCACTTTCCTTCATTCACCCATCATTGCCTTTTGTGCATC
ACATCGAAAAAAGAGAAAACAAGTATATGATAGAGCTTCACAAGAAAAGA
GATGAAAAAGCGAGACGGCGAAGTAGAACACCAGAGAAGGAAAACGATGC
ACTCTTGCCCGAAGAGTAGTGGAATAGAGAAAAAGAATATAAAGTAAAAT
AATCAGAGAAAAAAGGAAGGCAAGAGACATTCACCA

Coding sequence (CDS) from alignment at scaffold_53:89733..91618+

>mRNA_10564 ID=mRNA_10564|Name=jgi.p|Nanoce1779_2|611002|organism=Nannochloropsis oceanica|type=CDS|length=2403bp|location=Sequence derived from alignment at scaffold_53:89733..91618+ (Nannochloropsis oceanica)
ATGCTTCGCCCCTCAATCCTCTCGGGCCTAGCGCTCCTTGCGACTCTGCG
GTCGGTATTGGTACGTATTTCCTCCCCCCCTTTCTTTTCCTACCCGACTC
ACTCCTTGATTGCCCTCTGTCCACATCTAATTCCAAAGGCACAAGGAAAA
CGCCAGTGGGTGGAGGGCTACCCTGTCCCAACCAACAACCAGAGCGATCC
CTCCAGCCCCCCTTTCGCCCAGGGCGTCCAGCTTGACGATATCGTCTACC
AATCTTTCGAGACCAAGGCCAAATCCCACCGGGCGGGCGACATTATCCGG
CTGTACACGACTTTCAAGCTCAATCGATGGCCCGAGGGCGCCACCTCTAT
TTACTGCGCGATGCGCAACTACAACGGTACCGCCACTGGGGGCGGCTCCA
ACTTCGCCATCAAAAACCGCAGAGAATTCTTCCACAAGAAGAAGTACGGG
ACAAACTACCAGATCGCCTTGTCCGAGACGGACGGCAAGATCGTGTGGGA
TTTTCAAAGGGCGGGGGAGTACCTTCAGGTCGGCCACACTTGGACGCTCT
ACGCCAAGGTCGTGATGAACAAGAACGTGGACATTAACGTTAATACCTGG
CGAGCCTACTGCGAGACCAAGCAGGACGACCCCTTAAAAAGTTGGTACTA
TTTCAAGAGCTGGATGGAATTGCCTGTCACTCCGGCAGGCCGTGTAAAGA
AGTCTACGGGCCCGGTCGGCCCTGGCCAGAAGGCCTACAGGAAGTTTATC
AGGAGGGAGAAGAGGATGAAGGCCAAGAAGACCGGGGCCTCCAAAGAATA
AATGCTTCGCCCCTCAATCCTCTCGGGCCTAGCGCTCCTTGCGACTCTGC
GGTCGGTATTGGTACGTATTTCCTCCCCCCCTTTCTTTTCCTACCCGACT
CACTCCTTGATTGCCCTCTGTCCACATCTAATTCCAAAGGCACAAGGAAA
ACGCCAGTGGGTGGAGGGCTACCCTGTCCCAACCAACAACCAGAGCGATC
CCTCCAGCCCCCCTTTCGCCCAGGGCGTCCAGCTTGACGATATCGTCTAC
CAATCTTTCGAGACCAAGGCCAAATCCCACCGGGCGGGCGACATTATCCG
GCTGTACACGACTTTCAAGCTCAATCGATGGCCCGAGGGCGCCACCTCTA
TTTACTGCGCGATGCGCAACTACAACGGTACCGCCACTGGGGGCGGCTCC
AACTTCGCCATCAAAAACCGCAGAGAATTCTTCCACAAGAAGAAGTACGG
GACAAACTACCAGATCGCCTTGTCCGAGACGGACGGCAAGATCGTGTGGG
ATTTTCAAAGGGCGGGGGAGTACCTTCAGGTCGGCCACACTTGGACGCTC
TACGCCAAGGTCGTGATGAACAAGAACGTGGACATTAACGTTAATACCTG
GCGAGCCTACTGCGAGACCAAGCAGGACGACCCCTTAAAAAGTTGGTACT
ATTTCAAGAGCTGGATGGAATTGCCTGTCACTCCGGCAGGCCGTGTAAAG
AAGTCTACGGGCCCGGTCGGCCCTGGCCAGAAGGCCTACAGGAAGTTTAT
CAGGAGGGAGAAGAGGATGAAGGCCAAGAAGACCGGGGCCTCCAAAGAAT
AAATGCTTCGCCCCTCAATCCTCTCGGGCCTAGCGCTCCTTGCGACTCTG
CGGTCGGTATTGGTACGTATTTCCTCCCCCCCTTTCTTTTCCTACCCGAC
TCACTCCTTGATTGCCCTCTGTCCACATCTAATTCCAAAGGCACAAGGAA
AACGCCAGTGGGTGGAGGGCTACCCTGTCCCAACCAACAACCAGAGCGAT
CCCTCCAGCCCCCCTTTCGCCCAGGGCGTCCAGCTTGACGATATCGTCTA
CCAATCTTTCGAGACCAAGGCCAAATCCCACCGGGCGGGCGACATTATCC
GGCTGTACACGACTTTCAAGCTCAATCGATGGCCCGAGGGCGCCACCTCT
ATTTACTGCGCGATGCGCAACTACAACGGTACCGCCACTGGGGGCGGCTC
CAACTTCGCCATCAAAAACCGCAGAGAATTCTTCCACAAGAAGAAGTACG
GGACAAACTACCAGATCGCCTTGTCCGAGACGGACGGCAAGATCGTGTGG
GATTTTCAAAGGGCGGGGGAGTACCTTCAGGTCGGCCACACTTGGACGCT
CTACGCCAAGGTCGTGATGAACAAGAACGTGGACATTAACGTTAATACCT
GGCGAGCCTACTGCGAGACCAAGCAGGACGACCCCTTAAAAAGTTGGTAC
TATTTCAAGAGCTGGATGGAATTGCCTGTCACTCCGGCAGGCCGTGTAAA
GAAGTCTACGGGCCCGGTCGGCCCTGGCCAGAAGGCCTACAGGAAGTTTA
TCAGGAGGGAGAAGAGGATGAAGGCCAAGAAGACCGGGGCCTCCAAAGAA
TAA

Synonyms

Publications