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Properties
| Property Name | Value |
|---|
| TranscriptId | 348734 |
| Track | FilteredModels2 |
| ProteinId | 348648 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:13615..15423 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10334 ID=mRNA_10334|Name=jgi.p|Nanoce1779_2|348648|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp
AACCGAAAGGCCGAACGAGACGGCCTTCTAAAAAGTGAAGGAACAGCAGC
AAACGTAAGCGGCGGTGGCGGCGGAAGAGGAGACAGAAAGGAGCTACGAG
TTTATTATCAGATATGATGATACAAGCACACGCGCCTCCGCCAGCGGGTG
CCATTGGAGGAGGTGAAGGAGGAGCAGCCCGGGGCCTCAACCCTTCTCGC
GCCCCTATGGCAGTCCCAGACTTGGCGCCTCGACAGCGTTTATTGGTATT
GCAACGTATCATGAGGGACCAAGCTGCTTTCCTAGCCACCAAAACGTTGC
CTTCTGAAGACTTTGGTTCGAACACTTTAAACTGGTATTGGGAATCCAGC
GACAAGCGCACGCGTAACCTCGAGTACATGTACCGGGCCATCCTCAACTT
CTGCCTGAACCGCGTCCCTCTGCAAGATAAGCGGATCATCAACGCCCTTG
TCCGCCTGTGCGAATCCCCTCTAAAAGACCCTGCCATGGCACAAACTCGA
TTCGGCCTCCCCAATTGGTTTACATCCTCCCTACTCCTGTGGATGACCTT
GAGGCAATTCCAGAAGCCACAACCACCAAATCCAGCAGCAGCGGCAGCGG
CAGCAGCGGCAGAAGCGGTAGCAGCAGGAGAAAGAGGAGGCAGAGGATGG
TCCGCACCGGCGGCTGCGGCGGAAGAGCCGGCAGGGAATGGCGAAAGAAA
AGGAGAAAAAGACATAGGAGGAAGAGAAAAAAAGGAGGAGGGAGGAGGAA
GCAAGGCTAACAGGGAGATTTTTTCTCCCTTCGTCAGACAGCAGTGCCGG
CCACAAGTTGTCACCCTCTTGAACATTCTTACTTTGCAGTTGCAAGCGGA
GGAGTTCCTTTACATCAAACTCGAAGGACGCACCTCCCGTCTGTGGGTGA
GCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTCTTGCTGGCCATTGCA
CGATTCGTACGGGTCATCTTCGAAGGAGACATTGAAGTTGGCCGGCTGGC
ACTCAAGGAGAGAGGATGGAGTGTACAGTGCGTGGATATAAATAAATACC
GGAAAATTAGAATAGTAGAGAGAGAGGGCAAGCAAAGGGATTCGGAAGAA
AGGAAAGAAGAGGATGAGAGGCAGGAACACTGGAATTGAGGGAGGGAGGG
GGAGAAGGACGAAGGCAGGGAGTGATAGTACGTGAGTGTATTTTGGAATA
GCAATCAACACCGACATACAGGGACGCGTGCGTGTCGGGTAGTGTATTCA
ACCAATGTCAGGCTACGACTCCTCCTCCTCCTACTATTATTATACAGCCA
CTAC back to topprotein sequence of jgi.p|Nanoce1779_2|348648 >mRNA_10334-protein ID=mRNA_10334-protein|Name=jgi.p|Nanoce1779_2|348648|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MMIQAHAPPPAGAIGGGEGGAARGLNPSRAPMAVPDLAPRQRLLVLQRIM
RDQAAFLATKTLPSEDFGSNTLNWYWESSDKRTRNLEYMYRAILNFCLNR
VPLQDKRIINALVRLCESPLKDPAMAQTRFGLPNWFTSSLLLWMTLRQFQ
KPQPPNPAAAAAAAAAEAVAAGERGGRGWSAPAAAAEEPAGNGERKGEKD
IGGREKKEEGGGSKANREIFSPFVRQQCRPQVVTLLNILTLQLQAEEFLY
IKLEGRTSRLWVSRSGLPALPTDVLLAIARFVRVIFEGDIEVGRLALKER
GWSVQCVDINKYRKIRIVEREGKQRDSEERKEEDERQEHWN* back to topmRNA from alignment at scaffold_54:13615..15423- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10334 ID=mRNA_10334|Name=jgi.p|Nanoce1779_2|348648|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at scaffold_54:13615..15423- (Nannochloropsis oceanica)
AACCGAAAGGCCGAACGAGACGGCCTTCTAAAAAGTGAAGGAACAGCAGC
AAACGTAAGCGGCGGTGGCGGCGGAAGAGGAGACAGAAAGGAGCTACGAG
TTTATTATCAGATATGATGATACAAGCACACGCGCCTCCGCCAGCGGGTG
CCATTGGAGGAGGTGAAGGAGGAGCAGCCCGGGGCCTCAACCCTTCTCGC
GCCCCTATGGCAGTCCCAGACTTGGCGCCTCGACAGCGTTTATTGGTATT
GCAACGTATCATGAGGGACCAAGCTGCTTTCCTAGCCACCAAAACGTTGC
CTTCTGAAGACTTTGGTTCGAGTAAGTGGGGCGGGAAGGGATGGAAGGAG
GGAAGAAGAGAGGGGGAGAGGAGGATAGGATGGATTCATGGCTTTAGCGA
TCGAAGCAGAAAAGTGTCGGGCCAGACGCTTGGGCTAGTACTCAACTCTC
CCTCCCTCCCTCTCTCCCTTTCTCCCTCCTTCCTTCCCTTCCTCCCTGCT
TTCCCTCCTTGGCTCCCTTCCTCCCTACTCCTCAGACACTTTAAACTGGT
ATTGGGAATCCAGCGACAAGCGCACGCGTAACCTCGAGTACATGTACCGG
GCCATCCTCAACTTCTGCCTGAACCGCGTCCCTCTGCAAGATAAGCGGAT
CATCAACGCCCTTGTCCGCCTGTGCGAATCCCCTCTAAAAGACCCTGCCA
TGGCACAAACTCGATTCGGCCTCCCCAATTGGTTTACATCCTCCCTACTC
CTGTGGATGACCTTGAGGCAATTCCAGAAGCCACAACCACCAAATCCAGC
AGCAGCGGCAGCGGCAGCAGCGGCAGAAGCGGTAGCAGCAGGAGAAAGAG
GAGGCAGAGGATGGTCCGCACCGGCGGCTGCGGCGGAAGAGCCGGCAGGG
AATGGCGAAAGAAAAGGAGAAAAAGACATAGGAGGAAGAGAAAAAAAGGA
GGAGGGAGGAGGAAGCAAGGCTAACAGGGAGATTTTTTCTCCCTTCGTCA
GACAGCAGTGCCGGCCACAAGTTGTCACCCTCTTGAACATTCTTACTTTG
CAGTTGCAAGCGGAGGTAAGCCCAGTCCTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCCCCCCTCCCTCCCTCCCTCCCTTCCTTCGTCCCTTCCTC
TCTCCCTTCTTCCCTTTCCTCTGTTCACCCTTCTCATTCCTCTATTGGCC
GTCGGAGTGGCTGCTGTTCCTCATCCCCCCCCCCTCCCTCCCTCCCTCCC
TCATTCGCCCCCAGGAGTTCCTTTACATCAAACTCGAAGGACGCACCTCC
CGTCTGTGGGTGAGCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTCTT
GCTGGCCATTGCACGATTCGTACGGGTCATCTTCGAAGGAGACATTGAAG
TTGGCCGGCTGGCACTCAAGGCGGAGAAGACGACGATGGAGGTGGTGGCG
GAGCGGGGGAGGGAGGGGAGATCGGAGGGAGGAGGGGGCCCTGCTTAACA
GGGAGAAGGAAGGAGAGAGGATGGAGTGTACAGTGCGTGGATATAAATAA
ATACCGGAAAATTAGAATAGTAGAGAGAGAGGGCAAGCAAAGGGATTCGG
AAGAAAGGAAAGAAGAGGATGAGAGGCAGGAACACTGGAATTGAGGGAGG
GAGGGGGAGAAGGACGAAGGCAGGGAGTGATAGTACGTGAGTGTATTTTG
GAATAGCAATCAACACCGACATACAGGGACGCGTGCGTGTCGGGTAGTGT
ATTCAACCAATGTCAGGCTACGACTCCTCCTCCTCCTACTATTATTATAC
AGCCACTAC back to topCoding sequence (CDS) from alignment at scaffold_54:13615..15423- >mRNA_10334 ID=mRNA_10334|Name=jgi.p|Nanoce1779_2|348648|organism=Nannochloropsis oceanica|type=CDS|length=4104bp|location=Sequence derived from alignment at scaffold_54:13615..15423- (Nannochloropsis oceanica)
GAGAGAGGATGGAGTGTACAGTGCGTGGATATAAATAAATACCGGAAAAT
TAGAATAGTAGAGAGAGAGGGCAAGCAAAGGGATTCGGAAGAAAGGAAAG
AAGAGGATGAGAGGCAGGAACACTGGAATTGAGAGTTCCTTTACATCAAA
CTCGAAGGACGCACCTCCCGTCTGTGGGTGAGCAGGAGCGGCTTGCCTGC
CCTGCCCACGGACGTCTTGCTGGCCATTGCACGATTCGTACGGGTCATCT
TCGAAGGAGACATTGAAGTTGGCCGGCTGGCACTCAAGACACTTTAAACT
GGTATTGGGAATCCAGCGACAAGCGCACGCGTAACCTCGAGTACATGTAC
CGGGCCATCCTCAACTTCTGCCTGAACCGCGTCCCTCTGCAAGATAAGCG
GATCATCAACGCCCTTGTCCGCCTGTGCGAATCCCCTCTAAAAGACCCTG
CCATGGCACAAACTCGATTCGGCCTCCCCAATTGGTTTACATCCTCCCTA
CTCCTGTGGATGACCTTGAGGCAATTCCAGAAGCCACAACCACCAAATCC
AGCAGCAGCGGCAGCGGCAGCAGCGGCAGAAGCGGTAGCAGCAGGAGAAA
GAGGAGGCAGAGGATGGTCCGCACCGGCGGCTGCGGCGGAAGAGCCGGCA
GGGAATGGCGAAAGAAAAGGAGAAAAAGACATAGGAGGAAGAGAAAAAAA
GGAGGAGGGAGGAGGAAGCAAGGCTAACAGGGAGATTTTTTCTCCCTTCG
TCAGACAGCAGTGCCGGCCACAAGTTGTCACCCTCTTGAACATTCTTACT
TTGCAGTTGCAAGCGGAGATGATGATACAAGCACACGCGCCTCCGCCAGC
GGGTGCCATTGGAGGAGGTGAAGGAGGAGCAGCCCGGGGCCTCAACCCTT
CTCGCGCCCCTATGGCAGTCCCAGACTTGGCGCCTCGACAGCGTTTATTG
GTATTGCAACGTATCATGAGGGACCAAGCTGCTTTCCTAGCCACCAAAAC
GTTGCCTTCTGAAGACTTTGGTTCGAGAGAGAGGATGGAGTGTACAGTGC
GTGGATATAAATAAATACCGGAAAATTAGAATAGTAGAGAGAGAGGGCAA
GCAAAGGGATTCGGAAGAAAGGAAAGAAGAGGATGAGAGGCAGGAACACT
GGAATTGAGAGTTCCTTTACATCAAACTCGAAGGACGCACCTCCCGTCTG
TGGGTGAGCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTCTTGCTGGC
CATTGCACGATTCGTACGGGTCATCTTCGAAGGAGACATTGAAGTTGGCC
GGCTGGCACTCAAGACACTTTAAACTGGTATTGGGAATCCAGCGACAAGC
GCACGCGTAACCTCGAGTACATGTACCGGGCCATCCTCAACTTCTGCCTG
AACCGCGTCCCTCTGCAAGATAAGCGGATCATCAACGCCCTTGTCCGCCT
GTGCGAATCCCCTCTAAAAGACCCTGCCATGGCACAAACTCGATTCGGCC
TCCCCAATTGGTTTACATCCTCCCTACTCCTGTGGATGACCTTGAGGCAA
TTCCAGAAGCCACAACCACCAAATCCAGCAGCAGCGGCAGCGGCAGCAGC
GGCAGAAGCGGTAGCAGCAGGAGAAAGAGGAGGCAGAGGATGGTCCGCAC
CGGCGGCTGCGGCGGAAGAGCCGGCAGGGAATGGCGAAAGAAAAGGAGAA
AAAGACATAGGAGGAAGAGAAAAAAAGGAGGAGGGAGGAGGAAGCAAGGC
TAACAGGGAGATTTTTTCTCCCTTCGTCAGACAGCAGTGCCGGCCACAAG
TTGTCACCCTCTTGAACATTCTTACTTTGCAGTTGCAAGCGGAGATGATG
ATACAAGCACACGCGCCTCCGCCAGCGGGTGCCATTGGAGGAGGTGAAGG
AGGAGCAGCCCGGGGCCTCAACCCTTCTCGCGCCCCTATGGCAGTCCCAG
ACTTGGCGCCTCGACAGCGTTTATTGGTATTGCAACGTATCATGAGGGAC
CAAGCTGCTTTCCTAGCCACCAAAACGTTGCCTTCTGAAGACTTTGGTTC
GAGAGAGAGGATGGAGTGTACAGTGCGTGGATATAAATAAATACCGGAAA
ATTAGAATAGTAGAGAGAGAGGGCAAGCAAAGGGATTCGGAAGAAAGGAA
AGAAGAGGATGAGAGGCAGGAACACTGGAATTGAGAGTTCCTTTACATCA
AACTCGAAGGACGCACCTCCCGTCTGTGGGTGAGCAGGAGCGGCTTGCCT
GCCCTGCCCACGGACGTCTTGCTGGCCATTGCACGATTCGTACGGGTCAT
CTTCGAAGGAGACATTGAAGTTGGCCGGCTGGCACTCAAGACACTTTAAA
CTGGTATTGGGAATCCAGCGACAAGCGCACGCGTAACCTCGAGTACATGT
ACCGGGCCATCCTCAACTTCTGCCTGAACCGCGTCCCTCTGCAAGATAAG
CGGATCATCAACGCCCTTGTCCGCCTGTGCGAATCCCCTCTAAAAGACCC
TGCCATGGCACAAACTCGATTCGGCCTCCCCAATTGGTTTACATCCTCCC
TACTCCTGTGGATGACCTTGAGGCAATTCCAGAAGCCACAACCACCAAAT
CCAGCAGCAGCGGCAGCGGCAGCAGCGGCAGAAGCGGTAGCAGCAGGAGA
AAGAGGAGGCAGAGGATGGTCCGCACCGGCGGCTGCGGCGGAAGAGCCGG
CAGGGAATGGCGAAAGAAAAGGAGAAAAAGACATAGGAGGAAGAGAAAAA
AAGGAGGAGGGAGGAGGAAGCAAGGCTAACAGGGAGATTTTTTCTCCCTT
CGTCAGACAGCAGTGCCGGCCACAAGTTGTCACCCTCTTGAACATTCTTA
CTTTGCAGTTGCAAGCGGAGATGATGATACAAGCACACGCGCCTCCGCCA
GCGGGTGCCATTGGAGGAGGTGAAGGAGGAGCAGCCCGGGGCCTCAACCC
TTCTCGCGCCCCTATGGCAGTCCCAGACTTGGCGCCTCGACAGCGTTTAT
TGGTATTGCAACGTATCATGAGGGACCAAGCTGCTTTCCTAGCCACCAAA
ACGTTGCCTTCTGAAGACTTTGGTTCGAGAGAGAGGATGGAGTGTACAGT
GCGTGGATATAAATAAATACCGGAAAATTAGAATAGTAGAGAGAGAGGGC
AAGCAAAGGGATTCGGAAGAAAGGAAAGAAGAGGATGAGAGGCAGGAACA
CTGGAATTGAGAGTTCCTTTACATCAAACTCGAAGGACGCACCTCCCGTC
TGTGGGTGAGCAGGAGCGGCTTGCCTGCCCTGCCCACGGACGTCTTGCTG
GCCATTGCACGATTCGTACGGGTCATCTTCGAAGGAGACATTGAAGTTGG
CCGGCTGGCACTCAAGACACTTTAAACTGGTATTGGGAATCCAGCGACAA
GCGCACGCGTAACCTCGAGTACATGTACCGGGCCATCCTCAACTTCTGCC
TGAACCGCGTCCCTCTGCAAGATAAGCGGATCATCAACGCCCTTGTCCGC
CTGTGCGAATCCCCTCTAAAAGACCCTGCCATGGCACAAACTCGATTCGG
CCTCCCCAATTGGTTTACATCCTCCCTACTCCTGTGGATGACCTTGAGGC
AATTCCAGAAGCCACAACCACCAAATCCAGCAGCAGCGGCAGCGGCAGCA
GCGGCAGAAGCGGTAGCAGCAGGAGAAAGAGGAGGCAGAGGATGGTCCGC
ACCGGCGGCTGCGGCGGAAGAGCCGGCAGGGAATGGCGAAAGAAAAGGAG
AAAAAGACATAGGAGGAAGAGAAAAAAAGGAGGAGGGAGGAGGAAGCAAG
GCTAACAGGGAGATTTTTTCTCCCTTCGTCAGACAGCAGTGCCGGCCACA
AGTTGTCACCCTCTTGAACATTCTTACTTTGCAGTTGCAAGCGGAGATGA
TGATACAAGCACACGCGCCTCCGCCAGCGGGTGCCATTGGAGGAGGTGAA
GGAGGAGCAGCCCGGGGCCTCAACCCTTCTCGCGCCCCTATGGCAGTCCC
AGACTTGGCGCCTCGACAGCGTTTATTGGTATTGCAACGTATCATGAGGG
ACCAAGCTGCTTTCCTAGCCACCAAAACGTTGCCTTCTGAAGACTTTGGT
TCGA back to top
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