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Properties
| Property Name | Value |
|---|
| TranscriptId | 611386 |
| Track | FilteredModels2 |
| ProteinId | 611300 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:72479..74091 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10388 ID=mRNA_10388|Name=jgi.p|Nanoce1779_2|611300|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
CACAACCCCCCCGATGCCGACAGCCCCTGCAACCCCTCCAACGCCCGCCA
CAACTCCTCCAACGCCTCCCGCGACCCCTCCAACGCCTGCCACAACCCCC
CCGATGCCGACAGCCCCTGCAACCCCTCCAACGCCCGCCATAACTCCTCC
GACACCTCCCGCGACCCCTCCAACGCCTGCCACAACCCCCCCGATGCCGA
CAGCCCCTGCAACCCCTCCAACGCCCGCCACAACTCCTCCGACGCCTCCC
GCGACCCCTCCTACGCCTGCTGACCCCGCAACTCCTCGCACACCAGCTGA
CCCTAGCACGACTCCAACCTACCCTGCGACCCCTCCAACATCGACCGGCA
CCACCACAACTCCCACCTACCCCACAACTTCTCCAACGCCAGCTGATCCC
GCCACAACGCCCACTTACCCCGCGACTCCTGAAACACCGACTGACTCCGC
GGATGGCTTGACTTTTGAGCAGAGAGGGTGCTTTAGGGCAGCAATGAGGC
TGTGTCCCAGGGCAGGGACAAATAGATTGGCCTTCTTGATGTGTGCAGAG
CAGAATGTTAGGGCATTCAGGTTCAGTCAGGAGTGCGTAGATTTGTTGAA
GAGAAGTGATCTAGATGCTTTGAGAGTTGATTATGAACAGAATCAGGCTG
AGGCTTAAGTGAGAGTTTGAGACTATTTTCTAATGAAGTGAGTGATAATG
CTAGGCTGTATGTGTGCATCTACGTGTGTGCGTGTGTGTAGCAATGGCAA
GAACAAGTCAAAATGATCGAATTCAGGCAGGCAGGCGAAGGCAAGGGTCT
GGATAGATCCATTGTGTCGCGCTCGAAGAGAGACTTGTCATAGGAATGGT
GATAAGAGTTAACCTGGTCAGATCACATTGTTGTATTTGTGTATCTCTGT
ATTTGATGGATGTTTGAGTAGTATGGAGAGAGTTTAAGAAGACAGTTGAG
GATAAGGAGAGATGCCTTTTCTTCTTGTGTTCTCTATCTTTCATATTAAA
TGTGTGTGCGGTTGCGGGTATAAATAAGAAAAGAGGGGGGAAAAGGGAAT
GCCACTTTGGCTTTCTTCAATCTGGGAACGTGCGATTGTGTGCAGTTGAT
GATTTAATGCTTTGAATGCCGCGCGAGAAAATTGAAGAGAAGACAAATTG
GCTTCAGGCGTTTTGAAAAAAACAAAAAAGGATACAGCAAAATAGCTGTG
AAATTAGAGATTTCTGGTCGTTGTGGGTGATGAGTAGAAACCAAGTGATG
ACTGTAGCACGAAGCACGTTCTCAGTATAGACTTGATGCGGGACTGCCTG
CAAAGGGATCGTTGAGTACAATTACGAGAGGTGGGGCAAGGGAGAAGAAG
AGACAAAGCCAGCGAGTAGAAAGGATAAAAAAAAAAGAGGAAAAGAGTAG
ATGTAGTTATGATTGTACTTTGTTTATGGAGTGTGAAGTGACAGAGCTGT
CGAGATTTTTAAAAAAAGTGAAAATGATGGAAGAACTTTCCAAAATTCGA
TGACTATTTTCGAGCGAACGACAAGGAGGCCTCACTACTCCTTCCTTAAC
CAAGTGAATTCCACAAATAAAGGGATTGAAAGAAAAAGAAGGAATAATGA
GGACGTTTGCTAA back to topprotein sequence of jgi.p|Nanoce1779_2|611300 >mRNA_10388-protein ID=mRNA_10388-protein|Name=jgi.p|Nanoce1779_2|611300|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MPTAPATPPTPATTPPTPPATPPTPATTPPMPTAPATPPTPAITPPTPPA
TPPTPATTPPMPTAPATPPTPATTPPTPPATPPTPADPATPRTPADPSTT
PTYPATPPTSTGTTTTPTYPTTSPTPADPATTPTYPATPETPTDSADGLT
FEQRGCFRAAMRLCPRAGTNRLAFLMCAEQNVRAFRFSQECVDLLKRSDL
DALRVDYEQNQAEA* back to topmRNA from alignment at scaffold_55:72479..74091- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10388 ID=mRNA_10388|Name=jgi.p|Nanoce1779_2|611300|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp|location=Sequence derived from alignment at scaffold_55:72479..74091- (Nannochloropsis oceanica)
CACAACCCCCCCGATGCCGACAGCCCCTGCAACCCCTCCAACGCCCGCCA
CAACTCCTCCAACGCCTCCCGCGACCCCTCCAACGCCTGCCACAACCCCC
CCGATGCCGACAGCCCCTGCAACCCCTCCAACGCCCGCCATAACTCCTCC
GACACCTCCCGCGACCCCTCCAACGCCTGCCACAACCCCCCCGATGCCGA
CAGCCCCTGCAACCCCTCCAACGCCCGCCACAACTCCTCCGACGCCTCCC
GCGACCCCTCCTACGCCTGCTGACCCCGCAACTCCTCGCACACCAGCTGA
CCCTAGCACGACTCCAACCTACCCTGCGACCCCTCCAACATCGACCGGCA
CCACCACAACTCCCACCTACCCCACAACTTCTCCAACGCCAGCTGATCCC
GCCACAACGCCCACTTACCCCGCGACTCCTGAAACACCGACTGACTCCGC
GGATGGCTTGACTTTTGAGCAGAGAGGGTGCTTTAGGGCAGCAATGAGGC
TGTGTCCCAGGGCAGGGACAAATAGATTGGCCTTCTTGATGTGTGCAGAG
CAGAATGTTAGGGCATTCAGGTTCAGTCAGGAGTGCGTAGATTTGTTGAA
GAGAAGTGATCTAGATGCTTTGAGAGTTGATTATGAACAGAATCAGGCTG
AGGCTTAAGTGAGAGTTTGAGACTATTTTCTAATGAAGTGAGTGATAATG
CTAGGCTGTATGTGTGCATCTACGTGTGTGCGTGTGTGTAGCAATGGCAA
GAACAAGTCAAAATGATCGAATTCAGGCAGGCAGGCGAAGGCAAGGGTCT
GGATAGATCCATTGTGTCGCGCTCGAAGAGAGACTTGTCATAGGAATGGT
GATAAGAGTTAACCTGGTCAGATCACATTGTTGTATTTGTGTATCTCTGT
ATTTGATGGATGTTTGAGTAGTATGGAGAGAGTTTAAGAAGACAGTTGAG
GATAAGGAGAGATGCCTTTTCTTCTTGTGTTCTCTATCTTTCATATTAAA
TGTGTGTGCGGTTGCGGGTATAAATAAGAAAAGAGGGGGGAAAAGGGAAT
GCCACTTTGGCTTTCTTCAATCTGGGAACGTGCGATTGTGTGCAGTTGAT
GATTTAATGCTTTGAATGCCGCGCGAGAAAATTGAAGAGAAGACAAATTG
GCTTCAGGCGTTTTGAAAAAAACAAAAAAGGATACAGCAAAATAGCTGTG
AAATTAGAGATTTCTGGTCGTTGTGGGTGATGAGTAGAAACCAAGTGATG
ACTGTAGCACGAAGCACGTTCTCAGTATAGACTTGATGCGGGACTGCCTG
CAAAGGGATCGTTGAGTACAATTACGAGAGGTGGGGCAAGGGAGAAGAAG
AGACAAAGCCAGCGAGTAGAAAGGATAAAAAAAAAAGAGGAAAAGAGTAG
ATGTAGTTATGATTGTACTTTGTTTATGGAGTGTGAAGTGACAGAGCTGT
CGAGATTTTTAAAAAAAGTGAAAATGATGGAAGAACTTTCCAAAATTCGA
TGACTATTTTCGAGCGAACGACAAGGAGGCCTCACTACTCCTTCCTTAAC
CAAGTGAATTCCACAAATAAAGGGATTGAAAGAAAAAGAAGGAATAATGA
GGACGTTTGCTAA back to topCoding sequence (CDS) from alignment at scaffold_55:72479..74091- >mRNA_10388 ID=mRNA_10388|Name=jgi.p|Nanoce1779_2|611300|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_55:72479..74091- (Nannochloropsis oceanica)
ATGCCGACAGCCCCTGCAACCCCTCCAACGCCCGCCACAACTCCTCCAAC
GCCTCCCGCGACCCCTCCAACGCCTGCCACAACCCCCCCGATGCCGACAG
CCCCTGCAACCCCTCCAACGCCCGCCATAACTCCTCCGACACCTCCCGCG
ACCCCTCCAACGCCTGCCACAACCCCCCCGATGCCGACAGCCCCTGCAAC
CCCTCCAACGCCCGCCACAACTCCTCCGACGCCTCCCGCGACCCCTCCTA
CGCCTGCTGACCCCGCAACTCCTCGCACACCAGCTGACCCTAGCACGACT
CCAACCTACCCTGCGACCCCTCCAACATCGACCGGCACCACCACAACTCC
CACCTACCCCACAACTTCTCCAACGCCAGCTGATCCCGCCACAACGCCCA
CTTACCCCGCGACTCCTGAAACACCGACTGACTCCGCGGATGGCTTGACT
TTTGAGCAGAGAGGGTGCTTTAGGGCAGCAATGAGGCTGTGTCCCAGGGC
AGGGACAAATAGATTGGCCTTCTTGATGTGTGCAGAGCAGAATGTTAGGG
CATTCAGGTTCAGTCAGGAGTGCGTAGATTTGTTGAAGAGAAGTGATCTA
GATGCTTTGAGAGTTGATTATGAACAGAATCAGGCTGAGGCTTAA back to top
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