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Properties
| Property Name | Value |
|---|
| TranscriptId | 525734 |
| Track | FilteredModels2 |
| ProteinId | 525648 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:727969..729567 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3595 ID=mRNA_3595|Name=jgi.p|Nanoce1779_2|525648|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp
ATGGCGGCTAATCAACCACCCTGGAAACGACGTGGACGGGAGCAAAAGCG
GGACGCCGAAGACGAGCTAGCTCTATTCGAGCAAAATCTGTTGAACCACG
GCGTCGTCCAACCAGGCCCGGCCTCCCCTGCCCCCCAAAAGCCGAAGCCC
TCCAAGTCCCTGAAGACCATAAAATCCTCCCAATCCTCTCCAGTACCACG
CCCACCACAAGCTGCGGGGGCAACAGCAGCAGCAGGAGGAATCAAAGAGG
GACCTCTGCAAGACACTCCAATCGAGGGACAGGCCCAAGAGACCTTCCTC
GCGGAGGCTTCCGATTCACTGGTACGTGTCGATCGCTTCCTGGCCCTGCG
ACTGCCTATGCAAAGTCGAAGCGCTCTGGGAGATATTTTCGACGAAGGTT
TGGTTTTTGTCAATGGCATCCCTGCCCGGAAGAGCCTAAAGCTTGTAGAG
GGCGATAAGGTCGAAATTCAGGAGCACACACGTGCAGGCATGTCAGACGA
CATCCGAGGAGAAGACATCCCTCTGACGGTTCTTTACGAAGACGAACACC
TCATTGCAATAAATAAGGCTCCTGGTATGGTCGTGCATCCTGCCCCTGGT
AACCGAAATGGGACGTTTGTCAACGCCCTCGTTTACCACGTCGCCCGCGG
GGGGGGCAGCATCGAAACAACCGCCGGAAGCGAGGGTCGTCCTGGTATAG
TCCACCGTCTCGATAAAGGCACAAGTGGAGTCCTTCTCGCCGCTAAAACA
GCTAAAGCGCATGCTTCGTTGTCTGCTGCCTTTTCTGAGCGGCGCGTGAA
TAAGACCTATTTGGCTATCAGCATTGGGAATCCTTCTACGGAAGGAGCGG
TGATTGACGTCCCAATTGGTCGCCATCCGCGGGATAGACAGCGAATGGCT
GCGTCTTGGACCATGCGTACACCATTGTTGGGACGGACGGCAAGGAGCAC
GGTCAAGACGTTGGCATTTGATGGGCGGTTGGGAGTGGTGGAGGTGGGGA
TTGAGACGGGGCGCACGCACCAGATCCGCGTGCATTTGCAACATCGACGG
AATCCGGTGTTGGGGGATGACTTGTATGGAAATGCCCAGTGGAATGCGCG
GGCGAAACGACGGTGGGGAATAAAGAGACCGATGTTGCATGCGTTGAGAG
TGGAGGTGGCGCATCCTGTGACGGGCGTGCCGCTGCGGTTGGTTGCGCCG
GTGCCCATGGACATGATGAGTGTGGTGTCCAATATATGGCCGCAGACCAA
AGGCAAGGAGGAGGAGGAGTGGTGGGTGACAGCAGAGGGCCGGTTGAGTG
AGAGGTGGGAGGAGGGGAAGGAGGAAGAGGAGGAGGAGGAGGAGCTGGCA
CTGAGAGAGGAGAAAGAACGCGTAGCGCGCTTGATTCGAGAAGGGAAGAT
CGACAAATTCGGGTGGGAGCTTGAGGGATGA back to topprotein sequence of jgi.p|Nanoce1779_2|525648 >mRNA_3595-protein ID=mRNA_3595-protein|Name=jgi.p|Nanoce1779_2|525648|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MAANQPPWKRRGREQKRDAEDELALFEQNLLNHGVVQPGPASPAPQKPKP
SKSLKTIKSSQSSPVPRPPQAAGATAAAGGIKEGPLQDTPIEGQAQETFL
AEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNGIPARKSLKLVE
GDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPG
NRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKT
AKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMA
ASWTMRTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRR
NPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAP
VPMDMMSVVSNIWPQTKGKEEEEWWVTAEGRLSERWEEGKEEEEEEEELA
LREEKERVARLIREGKIDKFGWELEG* back to topmRNA from alignment at scaffold_6:727969..729567- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3595 ID=mRNA_3595|Name=jgi.p|Nanoce1779_2|525648|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at scaffold_6:727969..729567- (Nannochloropsis oceanica)
ATGGCGGCTAATCAACCACCCTGGAAACGACGTGGACGGGAGCAAAAGCG
GGACGCCGAAGACGAGCTAGCTCTATTCGAGCAAAATCTGTTGAACCACG
GCGTCGTCCAACCAGGCCCGGCCTCCCCTGCCCCCCAAAAGCCGAAGCCC
TCCAAGTCCCTGAAGACCATAAAATCCTCCCAATCCTCTCCAGTACCACG
CCCACCACAAGCTGCGGGGGCAACAGCAGCAGCAGGAGGAATCAAAGAGG
GACCTCTGCAAGACACTCCAATCGAGGGACAGGCCCAAGAGACCTTCCTC
GCGGAGGCTTCCGATTCACTGGTACGTGTCGATCGCTTCCTGGCCCTGCG
ACTGCCTATGCAAAGTCGAAGCGCTCTGGGAGATATTTTCGACGAAGGTT
TGGTTTTTGTCAATGGCATCCCTGCCCGGAAGAGCCTAAAGCTTGTAGAG
GGCGATAAGGTCGAAATTCAGGAGCACACACGTGCAGGCATGTCAGACGA
CATCCGAGGAGAAGACATCCCTCTGACGGTTCTTTACGAAGACGAACACC
TCATTGCAATAAATAAGGCTCCTGGTATGGTCGTGCATCCTGCCCCTGGT
AACCGAAATGGGACGTTTGTCAACGCCCTCGTTTACCACGTCGCCCGCGG
GGGGGGCAGCATCGAAACAACCGCCGGAAGCGAGGGTCGTCCTGGTATAG
TCCACCGTCTCGATAAAGGCACAAGTGGAGTCCTTCTCGCCGCTAAAACA
GCTAAAGCGCATGCTTCGTTGTCTGCTGCCTTTTCTGAGCGGCGCGTGAA
TAAGACCTATTTGGCTATCAGCATTGGGAATCCTTCTACGGAAGGAGCGG
TGATTGACGTCCCAATTGGTCGCCATCCGCGGGATAGACAGCGAATGGCT
GTGGCGATGAAGGCAAGGGTGCCGATAGCTTATCTCTCCTCGCATGGGAG
AGGAGGCGTCTTGGACCATGCGGTGGAAGAAGAGGAGGAGGAGGAGGAGG
GGGAAGGAGGAGGGGATTTTGATTATGAAGGAGAGTCGACGTATGAAGGA
GAATTGCTCATGGGTCGGGGGGGTAACTCGGGAAGTACACCATTGTTGGG
ACGGACGGCAAGGAGCACGGTCAAGACGTTGGCATTTGATGGGCGGTTGG
GAGTGGTGGAGGTGGGGATTGAGACGGGGCGCACGCACCAGATCCGCGTG
CATTTGCAACATCGACGGAATCCGGTGTTGGGGGATGACTTGTATGGAAA
TGCCCAGTGGAATGCGCGGGCGAAACGACGGTGGGGAATAAAGAGACCGA
TGTTGCATGCGTTGAGAGTGGAGGTGGCGCATCCTGTGACGGGCGTGCCG
CTGCGGTTGGTTGCGCCGGTGCCCATGGACATGATGAGTGTGGTGTCCAA
TATATGGCCGCAGACCAAAGGCAAGGAGGAGGAGGAGTGGTGGGTGACAG
CAGAGGGCCGGTTGAGTGAGAGGTGGGAGGAGGGGAAGGAGGAAGAGGAG
GAGGAGGAGGAGCTGGCACTGAGAGAGGAGAAAGAACGCGTAGCGCGCTT
GATTCGAGAAGGGAAGATCGACAAATTCGGGTGGGAGCTTGAGGGATGA back to topCoding sequence (CDS) from alignment at scaffold_6:727969..729567- >mRNA_3595 ID=mRNA_3595|Name=jgi.p|Nanoce1779_2|525648|organism=Nannochloropsis oceanica|type=CDS|length=4293bp|location=Sequence derived from alignment at scaffold_6:727969..729567- (Nannochloropsis oceanica)
TACACCATTGTTGGGACGGACGGCAAGGAGCACGGTCAAGACGTTGGCAT
TTGATGGGCGGTTGGGAGTGGTGGAGGTGGGGATTGAGACGGGGCGCACG
CACCAGATCCGCGTGCATTTGCAACATCGACGGAATCCGGTGTTGGGGGA
TGACTTGTATGGAAATGCCCAGTGGAATGCGCGGGCGAAACGACGGTGGG
GAATAAAGAGACCGATGTTGCATGCGTTGAGAGTGGAGGTGGCGCATCCT
GTGACGGGCGTGCCGCTGCGGTTGGTTGCGCCGGTGCCCATGGACATGAT
GAGTGTGGTGTCCAATATATGGCCGCAGACCAAAGGCAAGGAGGAGGAGG
AGTGGTGGGTGACAGCAGAGGGCCGGTTGAGTGAGAGGTGGGAGGAGGGG
AAGGAGGAAGAGGAGGAGGAGGAGGAGCTGGCACTGAGAGAGGAGAAAGA
ACGCGTAGCGCGCTTGATTCGAGAAGGGAAGATCGACAAATTCGGGTGGG
AGCTTGAGGGATGAGCGTCTTGGACCATGCGATGGCGGCTAATCAACCAC
CCTGGAAACGACGTGGACGGGAGCAAAAGCGGGACGCCGAAGACGAGCTA
GCTCTATTCGAGCAAAATCTGTTGAACCACGGCGTCGTCCAACCAGGCCC
GGCCTCCCCTGCCCCCCAAAAGCCGAAGCCCTCCAAGTCCCTGAAGACCA
TAAAATCCTCCCAATCCTCTCCAGTACCACGCCCACCACAAGCTGCGGGG
GCAACAGCAGCAGCAGGAGGAATCAAAGAGGGACCTCTGCAAGACACTCC
AATCGAGGGACAGGCCCAAGAGACCTTCCTCGCGGAGGCTTCCGATTCAC
TGGTACGTGTCGATCGCTTCCTGGCCCTGCGACTGCCTATGCAAAGTCGA
AGCGCTCTGGGAGATATTTTCGACGAAGGTTTGGTTTTTGTCAATGGCAT
CCCTGCCCGGAAGAGCCTAAAGCTTGTAGAGGGCGATAAGGTCGAAATTC
AGGAGCACACACGTGCAGGCATGTCAGACGACATCCGAGGAGAAGACATC
CCTCTGACGGTTCTTTACGAAGACGAACACCTCATTGCAATAAATAAGGC
TCCTGGTATGGTCGTGCATCCTGCCCCTGGTAACCGAAATGGGACGTTTG
TCAACGCCCTCGTTTACCACGTCGCCCGCGGGGGGGGCAGCATCGAAACA
ACCGCCGGAAGCGAGGGTCGTCCTGGTATAGTCCACCGTCTCGATAAAGG
CACAAGTGGAGTCCTTCTCGCCGCTAAAACAGCTAAAGCGCATGCTTCGT
TGTCTGCTGCCTTTTCTGAGCGGCGCGTGAATAAGACCTATTTGGCTATC
AGCATTGGGAATCCTTCTACGGAAGGAGCGGTGATTGACGTCCCAATTGG
TCGCCATCCGCGGGATAGACAGCGAATGGCTTACACCATTGTTGGGACGG
ACGGCAAGGAGCACGGTCAAGACGTTGGCATTTGATGGGCGGTTGGGAGT
GGTGGAGGTGGGGATTGAGACGGGGCGCACGCACCAGATCCGCGTGCATT
TGCAACATCGACGGAATCCGGTGTTGGGGGATGACTTGTATGGAAATGCC
CAGTGGAATGCGCGGGCGAAACGACGGTGGGGAATAAAGAGACCGATGTT
GCATGCGTTGAGAGTGGAGGTGGCGCATCCTGTGACGGGCGTGCCGCTGC
GGTTGGTTGCGCCGGTGCCCATGGACATGATGAGTGTGGTGTCCAATATA
TGGCCGCAGACCAAAGGCAAGGAGGAGGAGGAGTGGTGGGTGACAGCAGA
GGGCCGGTTGAGTGAGAGGTGGGAGGAGGGGAAGGAGGAAGAGGAGGAGG
AGGAGGAGCTGGCACTGAGAGAGGAGAAAGAACGCGTAGCGCGCTTGATT
CGAGAAGGGAAGATCGACAAATTCGGGTGGGAGCTTGAGGGATGAGCGTC
TTGGACCATGCGATGGCGGCTAATCAACCACCCTGGAAACGACGTGGACG
GGAGCAAAAGCGGGACGCCGAAGACGAGCTAGCTCTATTCGAGCAAAATC
TGTTGAACCACGGCGTCGTCCAACCAGGCCCGGCCTCCCCTGCCCCCCAA
AAGCCGAAGCCCTCCAAGTCCCTGAAGACCATAAAATCCTCCCAATCCTC
TCCAGTACCACGCCCACCACAAGCTGCGGGGGCAACAGCAGCAGCAGGAG
GAATCAAAGAGGGACCTCTGCAAGACACTCCAATCGAGGGACAGGCCCAA
GAGACCTTCCTCGCGGAGGCTTCCGATTCACTGGTACGTGTCGATCGCTT
CCTGGCCCTGCGACTGCCTATGCAAAGTCGAAGCGCTCTGGGAGATATTT
TCGACGAAGGTTTGGTTTTTGTCAATGGCATCCCTGCCCGGAAGAGCCTA
AAGCTTGTAGAGGGCGATAAGGTCGAAATTCAGGAGCACACACGTGCAGG
CATGTCAGACGACATCCGAGGAGAAGACATCCCTCTGACGGTTCTTTACG
AAGACGAACACCTCATTGCAATAAATAAGGCTCCTGGTATGGTCGTGCAT
CCTGCCCCTGGTAACCGAAATGGGACGTTTGTCAACGCCCTCGTTTACCA
CGTCGCCCGCGGGGGGGGCAGCATCGAAACAACCGCCGGAAGCGAGGGTC
GTCCTGGTATAGTCCACCGTCTCGATAAAGGCACAAGTGGAGTCCTTCTC
GCCGCTAAAACAGCTAAAGCGCATGCTTCGTTGTCTGCTGCCTTTTCTGA
GCGGCGCGTGAATAAGACCTATTTGGCTATCAGCATTGGGAATCCTTCTA
CGGAAGGAGCGGTGATTGACGTCCCAATTGGTCGCCATCCGCGGGATAGA
CAGCGAATGGCTTACACCATTGTTGGGACGGACGGCAAGGAGCACGGTCA
AGACGTTGGCATTTGATGGGCGGTTGGGAGTGGTGGAGGTGGGGATTGAG
ACGGGGCGCACGCACCAGATCCGCGTGCATTTGCAACATCGACGGAATCC
GGTGTTGGGGGATGACTTGTATGGAAATGCCCAGTGGAATGCGCGGGCGA
AACGACGGTGGGGAATAAAGAGACCGATGTTGCATGCGTTGAGAGTGGAG
GTGGCGCATCCTGTGACGGGCGTGCCGCTGCGGTTGGTTGCGCCGGTGCC
CATGGACATGATGAGTGTGGTGTCCAATATATGGCCGCAGACCAAAGGCA
AGGAGGAGGAGGAGTGGTGGGTGACAGCAGAGGGCCGGTTGAGTGAGAGG
TGGGAGGAGGGGAAGGAGGAAGAGGAGGAGGAGGAGGAGCTGGCACTGAG
AGAGGAGAAAGAACGCGTAGCGCGCTTGATTCGAGAAGGGAAGATCGACA
AATTCGGGTGGGAGCTTGAGGGATGAGCGTCTTGGACCATGCGATGGCGG
CTAATCAACCACCCTGGAAACGACGTGGACGGGAGCAAAAGCGGGACGCC
GAAGACGAGCTAGCTCTATTCGAGCAAAATCTGTTGAACCACGGCGTCGT
CCAACCAGGCCCGGCCTCCCCTGCCCCCCAAAAGCCGAAGCCCTCCAAGT
CCCTGAAGACCATAAAATCCTCCCAATCCTCTCCAGTACCACGCCCACCA
CAAGCTGCGGGGGCAACAGCAGCAGCAGGAGGAATCAAAGAGGGACCTCT
GCAAGACACTCCAATCGAGGGACAGGCCCAAGAGACCTTCCTCGCGGAGG
CTTCCGATTCACTGGTACGTGTCGATCGCTTCCTGGCCCTGCGACTGCCT
ATGCAAAGTCGAAGCGCTCTGGGAGATATTTTCGACGAAGGTTTGGTTTT
TGTCAATGGCATCCCTGCCCGGAAGAGCCTAAAGCTTGTAGAGGGCGATA
AGGTCGAAATTCAGGAGCACACACGTGCAGGCATGTCAGACGACATCCGA
GGAGAAGACATCCCTCTGACGGTTCTTTACGAAGACGAACACCTCATTGC
AATAAATAAGGCTCCTGGTATGGTCGTGCATCCTGCCCCTGGTAACCGAA
ATGGGACGTTTGTCAACGCCCTCGTTTACCACGTCGCCCGCGGGGGGGGC
AGCATCGAAACAACCGCCGGAAGCGAGGGTCGTCCTGGTATAGTCCACCG
TCTCGATAAAGGCACAAGTGGAGTCCTTCTCGCCGCTAAAACAGCTAAAG
CGCATGCTTCGTTGTCTGCTGCCTTTTCTGAGCGGCGCGTGAATAAGACC
TATTTGGCTATCAGCATTGGGAATCCTTCTACGGAAGGAGCGGTGATTGA
CGTCCCAATTGGTCGCCATCCGCGGGATAGACAGCGAATGGCT back to top
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