jgi.p|Nanoce1779_2|525648, gene_3595 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525648
Unique Namegene_3595
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:727969..729567 -

Link to JBrowse

Properties
Property NameValue
TranscriptId525734
ProteinId525648
Product namePseudouridine synthase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:727969..729567 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0042299lupeol synthase activity
GO:0042300beta-amyrin synthase activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02660NO08G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525648mRNA_3595-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525648mRNA_3595Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|525648

>mRNA_3595-protein ID=mRNA_3595-protein|Name=jgi.p|Nanoce1779_2|525648|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MAANQPPWKRRGREQKRDAEDELALFEQNLLNHGVVQPGPASPAPQKPKP
SKSLKTIKSSQSSPVPRPPQAAGATAAAGGIKEGPLQDTPIEGQAQETFL
AEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNGIPARKSLKLVE
GDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPG
NRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKT
AKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMA
ASWTMRTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRR
NPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAP
VPMDMMSVVSNIWPQTKGKEEEEWWVTAEGRLSERWEEGKEEEEEEEELA
LREEKERVARLIREGKIDKFGWELEG*
back to top
Synonyms
Publications