jgi.p|Nanoce1779_2|533574, mRNA_9085 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533574
Unique Name	mRNA_9085
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1173
Alignment location	scaffold_40:87772..88944 -

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Properties


Property Name	Value
TranscriptId	533660
Track	FilteredModels2
ProteinId	533574

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:87772..88944 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533574	gene_9085	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9085	CDS_9085	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533574	mRNA_9085-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:87772..88944-
coding sequence from alignment at scaffold_40:87772..88944-

mRNA sequence

>mRNA_9085 ID=mRNA_9085|Name=jgi.p|Nanoce1779_2|533574|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ATGAGAACCGCCCCTTCTCCTTCGATCACAGCCAGCAGCAGCACGAACTT
AAACAACGCCAACCCTTCCGTGGCCAAAAACCAAGCCTGGACCTTCGTCC
GCGAGATGATGAAAGACTCGTGGATTGCACAAACCAACGCCCAACTCCTG
ACTGACATCATTCCTGCCCTGGAAGGTGGTTGTATCTATCTGCCTGGATT
TCTGTGTGCAGCCAACGACTTCAGTATCCTCAAGGGTTTGACTCGCGACC
TACAGTATTGCCCGGCCTCCAAGGAAGGAGGTGGATTCGTCACTTGGAGC
CAGCATCTCAAGTTCGAAAACCCTGGTTTTAGTCCCACCTTCCAACAGCT
TCTGGCTCGATTAGACGCGTATTTTGACGTGGAAATTCTTGCGACGCGTT
TGAATTTCTACAGGGATGGAAGCGACTTTAAGCCTTTCCATCACGATTCA
CACGCCTATGGCACTAATGGCAAGAAGGAGGATTTTACGATGGGTGCCTC
CTTTGGGAGCACGCGTAAACTAGCCTTTAGACATGAAGTGTCGGGACAGA
CTTTCACGATCGCGCAGGCGAATGGTGATATTTTCGCTTTCGATTCGGAA
GTAAATAGAGCGTTTACTCACGGGGTGCCCAAGATAAAGGGAGGTGCCGA
GAAGGCAGGTCCCAGGTTTTCCATCATTGCTTGGGGGAGGAGGCGGACAT
TGAATGAACGGAATTCGACAGTGACGGCCAGGGAGACCGATAAGGGCCAG
CGGCAGGAGAAGCAAGAGGGAGGGAGGGAAGGAGGCCACCGGGGGTATGG
AGGGGGAGGGAGGCATCGGCAGCGAAAGAAGGAGGCTGGGAAGGAGGGAG
GGAAGGAGGAGGGAGACGAGGTGATGCCAATCGGCATGGACGAGGTGGCG
CGATTGGTGGAGAAAATGGTGATGAAGGCTGACCAAAAGCAAGCACGAGA
AGCCTTGCTGTCGTCGTCTTCTCACGCTGGTGGGGGAGGAAGAGGAAAGG
ATGGAGGTGGAGGAGGAAGCGGCGGGAAATCAGTTGGCGGAGAGGCAGCG
GCGATGAAAGAAAATACGACGAGTGAGAACACAAGCGGCAGCAGCAGCAG
CAGTAATATTAGCGTCATGTCGATAGGGCGCACCCGGAGAGCGGGTCGAG
TTCAGCACTCATGGACTTCATGA

protein sequence of jgi.p|Nanoce1779_2|533574

>mRNA_9085-protein ID=mRNA_9085-protein|Name=jgi.p|Nanoce1779_2|533574|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MRTAPSPSITASSSTNLNNANPSVAKNQAWTFVREMMKDSWIAQTNAQLL
TDIIPALEGGCIYLPGFLCAANDFSILKGLTRDLQYCPASKEGGGFVTWS
QHLKFENPGFSPTFQQLLARLDAYFDVEILATRLNFYRDGSDFKPFHHDS
HAYGTNGKKEDFTMGASFGSTRKLAFRHEVSGQTFTIAQANGDIFAFDSE
VNRAFTHGVPKIKGGAEKAGPRFSIIAWGRRRTLNERNSTVTARETDKGQ
RQEKQEGGREGGHRGYGGGGRHRQRKKEAGKEGGKEEGDEVMPIGMDEVA
RLVEKMVMKADQKQAREALLSSSSHAGGGGRGKDGGGGGSGGKSVGGEAA
AMKENTTSENTSGSSSSSNISVMSIGRTRRAGRVQHSWTS*

mRNA from alignment at scaffold_40:87772..88944-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9085 ID=mRNA_9085|Name=jgi.p|Nanoce1779_2|533574|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at scaffold_40:87772..88944- (Nannochloropsis oceanica)
ATGAGAACCGCCCCTTCTCCTTCGATCACAGCCAGCAGCAGCACGAACTT
AAACAACGCCAACCCTTCCGTGGCCAAAAACCAAGCCTGGACCTTCGTCC
GCGAGATGATGAAAGACTCGTGGATTGCACAAACCAACGCCCAACTCCTG
ACTGACATCATTCCTGCCCTGGAAGGTGGTTGTATCTATCTGCCTGGATT
TCTGTGTGCAGCCAACGACTTCAGTATCCTCAAGGGTTTGACTCGCGACC
TACAGTATTGCCCGGCCTCCAAGGAAGGAGGTGGATTCGTCACTTGGAGC
CAGCATCTCAAGTTCGAAAACCCTGGTTTTAGTCCCACCTTCCAACAGCT
TCTGGCTCGATTAGACGCGTATTTTGACGTGGAAATTCTTGCGACGCGTT
TGAATTTCTACAGGGATGGAAGCGACTTTAAGCCTTTCCATCACGATTCA
CACGCCTATGGCACTAATGGCAAGAAGGAGGATTTTACGATGGGTGCCTC
CTTTGGGAGCACGCGTAAACTAGCCTTTAGACATGAAGTGTCGGGACAGA
CTTTCACGATCGCGCAGGCGAATGGTGATATTTTCGCTTTCGATTCGGAA
GTAAATAGAGCGTTTACTCACGGGGTGCCCAAGATAAAGGGAGGTGCCGA
GAAGGCAGGTCCCAGGTTTTCCATCATTGCTTGGGGGAGGAGGCGGACAT
TGAATGAACGGAATTCGACAGTGACGGCCAGGGAGACCGATAAGGGCCAG
CGGCAGGAGAAGCAAGAGGGAGGGAGGGAAGGAGGCCACCGGGGGTATGG
AGGGGGAGGGAGGCATCGGCAGCGAAAGAAGGAGGCTGGGAAGGAGGGAG
GGAAGGAGGAGGGAGACGAGGTGATGCCAATCGGCATGGACGAGGTGGCG
CGATTGGTGGAGAAAATGGTGATGAAGGCTGACCAAAAGCAAGCACGAGA
AGCCTTGCTGTCGTCGTCTTCTCACGCTGGTGGGGGAGGAAGAGGAAAGG
ATGGAGGTGGAGGAGGAAGCGGCGGGAAATCAGTTGGCGGAGAGGCAGCG
GCGATGAAAGAAAATACGACGAGTGAGAACACAAGCGGCAGCAGCAGCAG
CAGTAATATTAGCGTCATGTCGATAGGGCGCACCCGGAGAGCGGGTCGAG
TTCAGCACTCATGGACTTCATGA

Coding sequence (CDS) from alignment at scaffold_40:87772..88944-

>mRNA_9085 ID=mRNA_9085|Name=jgi.p|Nanoce1779_2|533574|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_40:87772..88944- (Nannochloropsis oceanica)
ATGAGAACCGCCCCTTCTCCTTCGATCACAGCCAGCAGCAGCACGAACTT
AAACAACGCCAACCCTTCCGTGGCCAAAAACCAAGCCTGGACCTTCGTCC
GCGAGATGATGAAAGACTCGTGGATTGCACAAACCAACGCCCAACTCCTG
ACTGACATCATTCCTGCCCTGGAAGGTGGTTGTATCTATCTGCCTGGATT
TCTGTGTGCAGCCAACGACTTCAGTATCCTCAAGGGTTTGACTCGCGACC
TACAGTATTGCCCGGCCTCCAAGGAAGGAGGTGGATTCGTCACTTGGAGC
CAGCATCTCAAGTTCGAAAACCCTGGTTTTAGTCCCACCTTCCAACAGCT
TCTGGCTCGATTAGACGCGTATTTTGACGTGGAAATTCTTGCGACGCGTT
TGAATTTCTACAGGGATGGAAGCGACTTTAAGCCTTTCCATCACGATTCA
CACGCCTATGGCACTAATGGCAAGAAGGAGGATTTTACGATGGGTGCCTC
CTTTGGGAGCACGCGTAAACTAGCCTTTAGACATGAAGTGTCGGGACAGA
CTTTCACGATCGCGCAGGCGAATGGTGATATTTTCGCTTTCGATTCGGAA
GTAAATAGAGCGTTTACTCACGGGGTGCCCAAGATAAAGGGAGGTGCCGA
GAAGGCAGGTCCCAGGTTTTCCATCATTGCTTGGGGGAGGAGGCGGACAT
TGAATGAACGGAATTCGACAGTGACGGCCAGGGAGACCGATAAGGGCCAG
CGGCAGGAGAAGCAAGAGGGAGGGAGGGAAGGAGGCCACCGGGGGTATGG
AGGGGGAGGGAGGCATCGGCAGCGAAAGAAGGAGGCTGGGAAGGAGGGAG
GGAAGGAGGAGGGAGACGAGGTGATGCCAATCGGCATGGACGAGGTGGCG
CGATTGGTGGAGAAAATGGTGATGAAGGCTGACCAAAAGCAAGCACGAGA
AGCCTTGCTGTCGTCGTCTTCTCACGCTGGTGGGGGAGGAAGAGGAAAGG
ATGGAGGTGGAGGAGGAAGCGGCGGGAAATCAGTTGGCGGAGAGGCAGCG
GCGATGAAAGAAAATACGACGAGTGAGAACACAAGCGGCAGCAGCAGCAG
CAGTAATATTAGCGTCATGTCGATAGGGCGCACCCGGAGAGCGGGTCGAG
TTCAGCACTCATGGACTTCATGA

Synonyms

Publications