jgi.p|Nanoce1779_2|611115, mRNA_10345 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611115
Unique Name	mRNA_10345
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1489
Alignment location	scaffold_54:46005..47493 +

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Properties


Property Name	Value
TranscriptId	611201
Track	FilteredModels2
ProteinId	611115

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:46005..47493 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611115	gene_10345	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611115	mRNA_10345-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10345	CDS_10345	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:46005..47493+
coding sequence from alignment at scaffold_54:46005..47493+

mRNA sequence

>mRNA_10345 ID=mRNA_10345|Name=jgi.p|Nanoce1779_2|611115|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AACAATAACAACAACAATAACAACAACAGCAGCGGCTGTAGAAACTGTAG
AAACAATGCCGCTCAGGAAGAGCAAGGATCCCCAACACGAGGCAACCAGT
CTTCTTCATGGACCATCTTTCGTATTCCACCCCATCCTTCAAGCTTTGCT
CATTCCTCACACACAGACCAAGCCACCTCCTCTACCTGGCTCACCCTCGC
GGCCCCCCTCCGCTTCCTCATACGCCATCTCCCCACCACCCTCACTGTCG
GTTCTGCGATTGCATCGTGCTCCCTCCTCCGCCTCCCACGGCTGTTTCCC
TGCTTATTCAGCAGCTTGCATTCTTCCCCTCCCTCGCCCACCTAATACTG
GAGTACCGGAACTTTAGGGCTCAAGACGCTGCGGCTCTGGCTGCCCTTCT
GGCGACCATTCCGCCCCCTCCCTTCGCCGCGCACCTCCAAACCCTCAACA
TTTCGTGTAATGTCTTCTGTAAAGACGTAGGGCGTGTCTTGGGGAAATGC
TTGCAGCACCTGCCCTCCCTCCATACTCTCCTCCTGAACGATAACTCCAT
GGACAACGCGGCGGCGGCTGCCGTGTGTGCCTCCCTACGAGGAAAGGCGA
ATGTGGAGCTCCGTCGCCTTTCTCTGGCTTGGAACTGGGTTGGAGTGATG
GGGAGTAGGGAGGTAGGGGGGTTGCTTGGCTCGGGGGCGGTGGCACAGTT
GGAGTGGCTGGATGTGAAAGGGAACGGAATAACGAGTGTGGGGTTGTGTT
TGTTCGTGGAGGCCATGCAGCAGGAGATAGAAAAGAGGGAAAGGAGGAGG
AAGAGGGAGGAGACAAAGGATGGGTATAGGATGAGGAGTGGTGGTGGGAG
TCGGGTAAGGGAGAGTGAAAAGGTGGAGAAGAATGAGGAGGGTGAGGTCG
ATCATCTTCATCCGCTTCAGCTTTCGGCCCACCAGCGGCATTACCTCCAT
TTCCACCCCCCTTCAACTGGCAGCGACGAGCAGCCTACCCCTTTCTGCTT
TCCTAACTCCCCTTGCCCCTCTTTGTGCGAGATGGATTTTTCGTATAATT
ACGTGGGAGGTGGAGGAGTGCGGGCGTTGGCAAACGCGGTGAGAAGGGGT
CTTTTCCCCGCCTTGCGTTCCATTGACCTGAGCCACAATTCAGTGGATCA
TGCCAGTGCCGAGATGCTGCGGATGGTATGTGGAAGTAGGGTTTGTGTGA
TCTTTTAGATGGTCTTTGTCGATATATTTGTGTACATATCTGAGAACGAG
GGAGGGGGTGAACATGGTGGTGGTGGTAAGAAGGAGCGACTTTGTGAAAG
AGGGTGGAGCGAGAAGGAGGACGTAAAGAGAATAAAAGGATGTGCTGGAC
CCTCATCGTTCGGTATAATCCGCGGAAATATGCGCGAGCTAACGCCCAGC
CGTCGAGACGACAAGGATCAAAAACAGCAAGAGACGAAT

protein sequence of jgi.p|Nanoce1779_2|611115

>mRNA_10345-protein ID=mRNA_10345-protein|Name=jgi.p|Nanoce1779_2|611115|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MDHLSYSTPSFKLCSFLTHRPSHLLYLAHPRGPPPLPHTPSPHHPHCRFC
DCIVLPPPPPTAVSLLIQQLAFFPSLAHLILEYRNFRAQDAAALAALLAT
IPPPPFAAHLQTLNISCNVFCKDVGRVLGKCLQHLPSLHTLLLNDNSMDN
AAAAAVCASLRGKANVELRRLSLAWNWVGVMGSREVGGLLGSGAVAQLEW
LDVKGNGITSVGLCLFVEAMQQEIEKRERRRKREETKDGYRMRSGGGSRV
RESEKVEKNEEGEVDHLHPLQLSAHQRHYLHFHPPSTGSDEQPTPFCFPN
SPCPSLCEMDFSYNYVGGGGVRALANAVRRGLFPALRSIDLSHNSVDHAS
AEMLRMVCGSRVCVIF*

mRNA from alignment at scaffold_54:46005..47493+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10345 ID=mRNA_10345|Name=jgi.p|Nanoce1779_2|611115|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp|location=Sequence derived from alignment at scaffold_54:46005..47493+ (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AACAATAACAACAACAATAACAACAACAGCAGCGGCTGTAGAAACTGTAG
AAACAATGCCGCTCAGGAAGAGCAAGGATCCCCAACACGAGGCAACCAGT
CTTCTTCATGGACCATCTTTCGTATTCCACCCCATCCTTCAAGCTTTGCT
CATTCCTCACACACAGACCAAGCCACCTCCTCTACCTGGCTCACCCTCGC
GGCCCCCCTCCGCTTCCTCATACGCCATCTCCCCACCACCCTCACTGTCG
GTTCTGCGATTGCATCGTGCTCCCTCCTCCGCCTCCCACGGCTGTTTCCC
TGCTTATTCAGCAGCTTGCATTCTTCCCCTCCCTCGCCCACCTAATACTG
GAGTACCGGAACTTTAGGGCTCAAGACGCTGCGGCTCTGGCTGCCCTTCT
GGCGACCATTCCGCCCCCTCCCTTCGCCGCGCACCTCCAAACCCTCAACA
TTTCGTGTAATGTCTTCTGTAAAGACGTAGGGCGTGTCTTGGGGAAATGC
TTGCAGCACCTGCCCTCCCTCCATACTCTCCTCCTGAACGATAACTCCAT
GGACAACGCGGCGGCGGCTGCCGTGTGTGCCTCCCTACGAGGAAAGGCGA
ATGTGGAGCTCCGTCGCCTTTCTCTGGCTTGGAACTGGGTTGGAGTGATG
GGGAGTAGGGAGGTAGGGGGGTTGCTTGGCTCGGGGGCGGTGGCACAGTT
GGAGTGGCTGGATGTGAAAGGGAACGGAATAACGAGTGTGGGGTTGTGTT
TGTTCGTGGAGGCCATGCAGCAGGAGATAGAAAAGAGGGAAAGGAGGAGG
AAGAGGGAGGAGACAAAGGATGGGTATAGGATGAGGAGTGGTGGTGGGAG
TCGGGTAAGGGAGAGTGAAAAGGTGGAGAAGAATGAGGAGGGTGAGGTCG
ATCATCTTCATCCGCTTCAGCTTTCGGCCCACCAGCGGCATTACCTCCAT
TTCCACCCCCCTTCAACTGGCAGCGACGAGCAGCCTACCCCTTTCTGCTT
TCCTAACTCCCCTTGCCCCTCTTTGTGCGAGATGGATTTTTCGTATAATT
ACGTGGGAGGTGGAGGAGTGCGGGCGTTGGCAAACGCGGTGAGAAGGGGT
CTTTTCCCCGCCTTGCGTTCCATTGACCTGAGCCACAATTCAGTGGATCA
TGCCAGTGCCGAGATGCTGCGGATGGTATGTGGAAGTAGGGTTTGTGTGA
TCTTTTAGATGGTCTTTGTCGATATATTTGTGTACATATCTGAGAACGAG
GGAGGGGGTGAACATGGTGGTGGTGGTAAGAAGGAGCGACTTTGTGAAAG
AGGGTGGAGCGAGAAGGAGGACGTAAAGAGAATAAAAGGATGTGCTGGAC
CCTCATCGTTCGGTATAATCCGCGGAAATATGCGCGAGCTAACGCCCAGC
CGTCGAGACGACAAGGATCAAAAACAGCAAGAGACGAAT

Coding sequence (CDS) from alignment at scaffold_54:46005..47493+

>mRNA_10345 ID=mRNA_10345|Name=jgi.p|Nanoce1779_2|611115|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_54:46005..47493+ (Nannochloropsis oceanica)
ATGGACCATCTTTCGTATTCCACCCCATCCTTCAAGCTTTGCTCATTCCT
CACACACAGACCAAGCCACCTCCTCTACCTGGCTCACCCTCGCGGCCCCC
CTCCGCTTCCTCATACGCCATCTCCCCACCACCCTCACTGTCGGTTCTGC
GATTGCATCGTGCTCCCTCCTCCGCCTCCCACGGCTGTTTCCCTGCTTAT
TCAGCAGCTTGCATTCTTCCCCTCCCTCGCCCACCTAATACTGGAGTACC
GGAACTTTAGGGCTCAAGACGCTGCGGCTCTGGCTGCCCTTCTGGCGACC
ATTCCGCCCCCTCCCTTCGCCGCGCACCTCCAAACCCTCAACATTTCGTG
TAATGTCTTCTGTAAAGACGTAGGGCGTGTCTTGGGGAAATGCTTGCAGC
ACCTGCCCTCCCTCCATACTCTCCTCCTGAACGATAACTCCATGGACAAC
GCGGCGGCGGCTGCCGTGTGTGCCTCCCTACGAGGAAAGGCGAATGTGGA
GCTCCGTCGCCTTTCTCTGGCTTGGAACTGGGTTGGAGTGATGGGGAGTA
GGGAGGTAGGGGGGTTGCTTGGCTCGGGGGCGGTGGCACAGTTGGAGTGG
CTGGATGTGAAAGGGAACGGAATAACGAGTGTGGGGTTGTGTTTGTTCGT
GGAGGCCATGCAGCAGGAGATAGAAAAGAGGGAAAGGAGGAGGAAGAGGG
AGGAGACAAAGGATGGGTATAGGATGAGGAGTGGTGGTGGGAGTCGGGTA
AGGGAGAGTGAAAAGGTGGAGAAGAATGAGGAGGGTGAGGTCGATCATCT
TCATCCGCTTCAGCTTTCGGCCCACCAGCGGCATTACCTCCATTTCCACC
CCCCTTCAACTGGCAGCGACGAGCAGCCTACCCCTTTCTGCTTTCCTAAC
TCCCCTTGCCCCTCTTTGTGCGAGATGGATTTTTCGTATAATTACGTGGG
AGGTGGAGGAGTGCGGGCGTTGGCAAACGCGGTGAGAAGGGGTCTTTTCC
CCGCCTTGCGTTCCATTGACCTGAGCCACAATTCAGTGGATCATGCCAGT
GCCGAGATGCTGCGGATGGTATGTGGAAGTAGGGTTTGTGTGATCTTTTA
G

Synonyms

Publications