jgi.p|Nanoce1779_2|611304, mRNA_10389 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611304
Unique NamemRNA_10389
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length841
Alignment locationscaffold_55:74831..76063 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611390
TrackFilteredModels2
ProteinId611304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:74831..76063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611304gene_10389Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611304mRNA_10389-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10389CDS_10389Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10389 ID=mRNA_10389|Name=jgi.p|Nanoce1779_2|611304|organism=Nannochloropsis oceanica|type=mRNA|length=841bp
GATCTGAATGATGGGAGTCGTGGTCGGAGTGATCGTTGCCATGATCCCAA
TGATCGTTGTCGTGACCCCAATGATCGTTGTCGTGATCCGAAGGAAAGGG
TGAGGGGGGGGTAGGGGGATGGGGGGTCTGATGCATCGTGGTGCGGGTCG
TGGGAGGGATAGTCGGGAGAAGGAGCCGGCTCGGGATGAGAAGGGGGGTG
AGGGTCGGGAGACGGATAGGAGGGTTTCTCATAGGGCTTCTCGTAGAGGA
CTTTGCGGACGTACTTGTAATAGGCGAGGTCACAGGTTTCGCGGATGTAC
TTGATGGTGGGGGCCACACCCATGCCATAGCAAAAGATCTCCGAGGGGTC
AATCGTGGCCATGCAGTAGCAGAAGTTGTCATAATCGTACATAAGCTTCT
TAGCCACCTTACCCGCCGGCTCCTTTCCATCGCTATTATTGCCCGTCTCC
TGGAACTTCTTCACGTATTTTACACACTCCTCGTCCATCTCCTTCTCGCC
CTTGTCTTCCTTGACCTTCTCCAGGCACTTGTTCAGATTCTTGAGTTCTA
AGCCCCCTAACACATCGCCGTGCCCTAAGTCGTCCTCCTTATTCAAGGAG
TACTTGATCCCATCAGGGCTGGTCTCCACGCACTTGGCCAGGGCATTCAC
AGCATCCTCGATGTATATACCTTCGACATACGTGCACTGACCCGGCTCCG
GTGGTGGCGCCCCACGGAAGTAGCCGGCGTGAGTGGGTTTGGGGAAGAGG
AGAAAGAGGAGGGAGGCGAAGAGGGTGGCAGGGAGGATGGGGAGGTGGAA
CGAAGAGGTGGTCGAAGCCCGACGGCGCTTCATCCTTCCCT
back to top

protein sequence of jgi.p|Nanoce1779_2|611304

>mRNA_10389-protein ID=mRNA_10389-protein|Name=jgi.p|Nanoce1779_2|611304|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MRRGVRVGRRIGGFLIGLLVEDFADVLVIGEVTGFADVLDGGGHTHAIAK
DLRGVNRGHAVAEVVIIVHKLLSHLTRRLLSIAIIARLLELLHVFYTLLV
HLLLALVFLDLLQALVQILEF*
back to top

mRNA from alignment at scaffold_55:74831..76063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10389 ID=mRNA_10389|Name=jgi.p|Nanoce1779_2|611304|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp|location=Sequence derived from alignment at scaffold_55:74831..76063+ (Nannochloropsis oceanica)
GATCTGAATGATGGGAGTCGTGGTCGGAGTGATCGTTGCCATGATCCCAA
TGATCGTTGTCGTGACCCCAATGATCGTTGTCGTGATCCGAAGGAAAGGG
TGAGGGGGGGGTAGGGGGATGGGGGGTCTGATGCATCGTGGTGCGGGTCG
TGGGAGGGATAGTCGGGAGAAGGAGCCGGCTCGGGATGAGAAGGGGGGTG
AGGGTCGGGAGACGGATAGGAGGGTTTCTCATAGGGCTTCTCGTAGAGGA
CTTTGCGGACGTACTTGTAATAGGCGAGGTCACAGGTTTCGCGGATGTAC
TTGATGGTGGGGGCCTGTGGAGGGAGGGGAGAAGGGAGGGAAAGGAATAA
GAATGCGTGGAAAGAAGGGAAAGGAAGGAGACCGGAAAGAATACTACCGC
AGAGTAGAAGTTGACGCGTATATATACATATGTGAGGTTATGGAAAGAAG
GAAGATAGGCCTGCCTCCTTTCTCCTTTGTTCTCTGCCAAGCAAAGTAGA
CTCACTAATACCCGTGCATGTACCCCTCTCTCCCTCCCTCCCTCCCTCCC
TCTCTATCCCTCCCTTCCCCTATGTATCACACCCATACCATGACAAAAGA
GAGATCTAATTGGAGTCATTTGCAGCATGTCTCAAAATCGAGTCATCTTC
TAGTCACGTAGAAACTATCCCTTCCTCCCTCCCTCCCTCCCTCCCTGAAC
ACATACCACACCCATGCCATAGCAAAAGATCTCCGAGGGGTCAATCGTGG
CCATGCAGTAGCAGAAGTTGTCATAATCGTACATAAGCTTCTTAGCCACC
TTACCCGCCGGCTCCTTTCCATCGCTATTATTGCCCGTCTCCTGGAACTT
CTTCACGTATTTTACACACTCCTCGTCCATCTCCTTCTCGCCCTTGTCTT
CCTTGACCTTCTCCAGGCACTTGTTCAGATTCTTGAGTTCTAAGCCCCCT
AACACATCGCCGTGCCCTAAGTCGTCCTCCTTATTCAAGGAGTACTTGAT
CCCATCAGGGCTGGTCTCCACGCACTTGGCCAGGGCATTCACAGCATCCT
CGATGTATATACCTTCGACATACGTGCACTGACCCGGCTCCGGTGGTGGC
GCCCCACGGAAGTAGCCGGCGTGAGTGGGTTTGGGGAAGAGGAGAAAGAG
GAGGGAGGCGAAGAGGGTGGCAGGGAGGATGGGGAGGTGGAACGAAGAGG
TGGTCGAAGCCCGACGGCGCTTCATCCTTCCCT
back to top

Coding sequence (CDS) from alignment at scaffold_55:74831..76063+

>mRNA_10389 ID=mRNA_10389|Name=jgi.p|Nanoce1779_2|611304|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_55:74831..76063+ (Nannochloropsis oceanica)
ATGAGAAGGGGGGTGAGGGTCGGGAGACGGATAGGAGGGTTTCTCATAGG
GCTTCTCGTAGAGGACTTTGCGGACGTACTTGTAATAGGCGAGGTCACAG
GTTTCGCGGATGTACTTGATGGTGGGGGCCACACCCATGCCATAGCAAAA
GATCTCCGAGGGGTCAATCGTGGCCATGCAGTAGCAGAAGTTGTCATAAT
CGTACATAAGCTTCTTAGCCACCTTACCCGCCGGCTCCTTTCCATCGCTA
TTATTGCCCGTCTCCTGGAACTTCTTCACGTATTTTACACACTCCTCGTC
CATCTCCTTCTCGCCCTTGTCTTCCTTGACCTTCTCCAGGCACTTGTTCA
GATTCTTGAGTTCTAAATGAGAAGGGGGGTGAGGGTCGGGAGACGGATAG
GAGGGTTTCTCATAGGGCTTCTCGTAGAGGACTTTGCGGACGTACTTGTA
ATAGGCGAGGTCACAGGTTTCGCGGATGTACTTGATGGTGGGGGCCACAC
CCATGCCATAGCAAAAGATCTCCGAGGGGTCAATCGTGGCCATGCAGTAG
CAGAAGTTGTCATAATCGTACATAAGCTTCTTAGCCACCTTACCCGCCGG
CTCCTTTCCATCGCTATTATTGCCCGTCTCCTGGAACTTCTTCACGTATT
TTACACACTCCTCGTCCATCTCCTTCTCGCCCTTGTCTTCCTTGACCTTC
TCCAGGCACTTGTTCAGATTCTTGAGTTCTAA
back to top
Synonyms
Publications