jgi.p|Nanoce1779_2|352822, mRNA_10597 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|352822
Unique NamemRNA_10597
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1049
Alignment locationscaffold_56:81313..82361 -

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Properties
Property NameValue
TranscriptId352908
TrackFilteredModels2
ProteinId352822
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:81313..82361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352822gene_10597Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|352822mRNA_10597-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10597CDS_10597Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10597 ID=mRNA_10597|Name=jgi.p|Nanoce1779_2|352822|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp
GGAAGGGGGGGGGGGCGGAGGAAGAAGAAGAGGGAGGGTGGAGCGAGGAG
CGATTGGAGGGAGGGACGTTGCGGATTCATTTGGTGCCCCGGGCGACAGT
GCGAGACCTCTGGGGGCAGGAGGCGGTGCAGGGCGGGATGGAGGAAGGGA
AGGAGATGCATTTGATTATACATTGGAAGGCGCCTGGTTTGTCGATCAGC
ACCTGCTCCCCTTCCTCCTTCTCGGAAGGGGAGGAGGGGCAGCTTCAAGT
CTCCCCGTCATTCCAAGAGGATGGCTTGCGGTCTCCGGAGGGGGGGGGCG
AGGAGGAGGAGGGAGGGAGGGAGGCCGGGAAAGAGGTTGCCACATCGTTT
CGTAACCTTCGTGACCCCGGAGCAGCACCAGTCGCTGCAGCCACAGTAGC
TGCAGCAGCTGCAGTACCAGCTGCGCCTTCTGCTCCTGCCCTCCCGGCCC
CCACAGCAGAGGAACAGTACCTCCTAGCCCCTTTCCCCCCTCAACAGCAG
CAGCAACAAGATACCCACCCCTCCCGCCTCTCCTCCCCCTCTCCCTTCCT
TCTCCCCATGCCCAGCAGCAGCGACAGCGCCAATAACTTCCTGCCCTTCC
CCCACTTTTTCCACTCCCCCTCCTCCTCTCGCCCCCTCTCCCATCCGTCC
TTCCCCTTCCCTCCTCCTCCACCTTCCCCTCCTTCTCCCCCTTCCGTCCC
TTCCCTTCTCCCTTCCCCGGAGCTTCGGGCCAAGATGGAGAAGACAATCG
ACTTTCTCATTGCCCGCGCCTCCCCATCGCAGACCCTCCGAGAGCTCAAG
GACAAAATCGCGGCCGACCCCACAGCGTACAACGGGATGGACTTCGTTTT
CGAGGAAAACCAGGACCATGTCTACTTCCGCCAGCTGCTTGCAGGGAGGC
TGGGAGGAGTGGCAAGGGCGGGGGAGGGCTTCTTCCCTCCCGTCCTCCCT
CGGTCCCCTCGTGTCTAGATATTACGGGAAGGACGGCTGCCCCTTCGCCG
TTGCCGGACCGACCTCCCTCCTTCCCTCTCTCCAACCAGCTCCACCCCT
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protein sequence of jgi.p|Nanoce1779_2|352822

>mRNA_10597-protein ID=mRNA_10597-protein|Name=jgi.p|Nanoce1779_2|352822|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MEEGKEMHLIIHWKAPGLSISTCSPSSFSEGEEGQLQVSPSFQEDGLRSP
EGGGEEEEGGREAGKEVATSFRNLRDPGAAPVAAATVAAAAAVPAAPSAP
ALPAPTAEEQYLLAPFPPQQQQQQDTHPSRLSSPSPFLLPMPSSSDSANN
FLPFPHFFHSPSSSRPLSHPSFPFPPPPPSPPSPPSVPSLLPSPELRAKM
EKTIDFLIARASPSQTLRELKDKIAADPTAYNGMDFVFEENQDHVYFRQL
LAGRLGGVARAGEGFFPPVLPRSPRV*
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mRNA from alignment at scaffold_56:81313..82361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10597 ID=mRNA_10597|Name=jgi.p|Nanoce1779_2|352822|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp|location=Sequence derived from alignment at scaffold_56:81313..82361- (Nannochloropsis oceanica)
GGAAGGGGGGGGGGGCGGAGGAAGAAGAAGAGGGAGGGTGGAGCGAGGAG
CGATTGGAGGGAGGGACGTTGCGGATTCATTTGGTGCCCCGGGCGACAGT
GCGAGACCTCTGGGGGCAGGAGGCGGTGCAGGGCGGGATGGAGGAAGGGA
AGGAGATGCATTTGATTATACATTGGAAGGCGCCTGGTTTGTCGATCAGC
ACCTGCTCCCCTTCCTCCTTCTCGGAAGGGGAGGAGGGGCAGCTTCAAGT
CTCCCCGTCATTCCAAGAGGATGGCTTGCGGTCTCCGGAGGGGGGGGGCG
AGGAGGAGGAGGGAGGGAGGGAGGCCGGGAAAGAGGTTGCCACATCGTTT
CGTAACCTTCGTGACCCCGGAGCAGCACCAGTCGCTGCAGCCACAGTAGC
TGCAGCAGCTGCAGTACCAGCTGCGCCTTCTGCTCCTGCCCTCCCGGCCC
CCACAGCAGAGGAACAGTACCTCCTAGCCCCTTTCCCCCCTCAACAGCAG
CAGCAACAAGATACCCACCCCTCCCGCCTCTCCTCCCCCTCTCCCTTCCT
TCTCCCCATGCCCAGCAGCAGCGACAGCGCCAATAACTTCCTGCCCTTCC
CCCACTTTTTCCACTCCCCCTCCTCCTCTCGCCCCCTCTCCCATCCGTCC
TTCCCCTTCCCTCCTCCTCCACCTTCCCCTCCTTCTCCCCCTTCCGTCCC
TTCCCTTCTCCCTTCCCCGGAGCTTCGGGCCAAGATGGAGAAGACAATCG
ACTTTCTCATTGCCCGCGCCTCCCCATCGCAGACCCTCCGAGAGCTCAAG
GACAAAATCGCGGCCGACCCCACAGCGTACAACGGGATGGACTTCGTTTT
CGAGGAAAACCAGGACCATGTCTACTTCCGCCAGCTGCTTGCAGGGAGGC
TGGGAGGAGTGGCAAGGGCGGGGGAGGGCTTCTTCCCTCCCGTCCTCCCT
CGGTCCCCTCGTGTCTAGATATTACGGGAAGGACGGCTGCCCCTTCGCCG
TTGCCGGACCGACCTCCCTCCTTCCCTCTCTCCAACCAGCTCCACCCCT
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Coding sequence (CDS) from alignment at scaffold_56:81313..82361-

>mRNA_10597 ID=mRNA_10597|Name=jgi.p|Nanoce1779_2|352822|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_56:81313..82361- (Nannochloropsis oceanica)
ATGGAGGAAGGGAAGGAGATGCATTTGATTATACATTGGAAGGCGCCTGG
TTTGTCGATCAGCACCTGCTCCCCTTCCTCCTTCTCGGAAGGGGAGGAGG
GGCAGCTTCAAGTCTCCCCGTCATTCCAAGAGGATGGCTTGCGGTCTCCG
GAGGGGGGGGGCGAGGAGGAGGAGGGAGGGAGGGAGGCCGGGAAAGAGGT
TGCCACATCGTTTCGTAACCTTCGTGACCCCGGAGCAGCACCAGTCGCTG
CAGCCACAGTAGCTGCAGCAGCTGCAGTACCAGCTGCGCCTTCTGCTCCT
GCCCTCCCGGCCCCCACAGCAGAGGAACAGTACCTCCTAGCCCCTTTCCC
CCCTCAACAGCAGCAGCAACAAGATACCCACCCCTCCCGCCTCTCCTCCC
CCTCTCCCTTCCTTCTCCCCATGCCCAGCAGCAGCGACAGCGCCAATAAC
TTCCTGCCCTTCCCCCACTTTTTCCACTCCCCCTCCTCCTCTCGCCCCCT
CTCCCATCCGTCCTTCCCCTTCCCTCCTCCTCCACCTTCCCCTCCTTCTC
CCCCTTCCGTCCCTTCCCTTCTCCCTTCCCCGGAGCTTCGGGCCAAGATG
GAGAAGACAATCGACTTTCTCATTGCCCGCGCCTCCCCATCGCAGACCCT
CCGAGAGCTCAAGGACAAAATCGCGGCCGACCCCACAGCGTACAACGGGA
TGGACTTCGTTTTCGAGGAAAACCAGGACCATGTCTACTTCCGCCAGCTG
CTTGCAGGGAGGCTGGGAGGAGTGGCAAGGGCGGGGGAGGGCTTCTTCCC
TCCCGTCCTCCCTCGGTCCCCTCGTGTCTAG
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Synonyms
Publications