jgi.p|Nanoce1779_2|534259, mRNA_10681 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|534259
Unique NamemRNA_10681
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1470
Alignment locationscaffold_76:24789..26410 -

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Properties
Property NameValue
TranscriptId534345
TrackFilteredModels2
ProteinId534259
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:24789..26410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534259gene_10681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534259mRNA_10681-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10681CDS_10681Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10681 ID=mRNA_10681|Name=jgi.p|Nanoce1779_2|534259|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
ATGCCCAACCACAAACGCCAGCATTGCGCATCCTCCTCGTCCTTTTCTCA
TGACGCCAAAACTATTCACTTGCCCGCCCCCCCTGCGGAGTGGACAGGGG
GGCTGCCACAAAACAAGCACGTCTTATTCTTGCGTGAATTTTGGCAACAA
AAGCCGCTATTGATTCGACAGGCTTTTGATCCAGCTGTGGCGGTGGTGGG
ACCGAATGAGCTGCTATCGTTGGCATGCGATGACATGGTGACGTCGCGCT
TGATCGAGCACCGGCCACACAGCGGAAGAGACAAACAGGCTGGACAGGAG
GAAGATGAAAAAGACAGTGAATGGAGTGTGCGGCAAGGACCTTTTGACGA
GGAGGATTTTGAAGACGACCCGGAGGGGGGGGAGAGGACGTGGACGGTGT
TGGTACAGGAGGTGGATAGGCATGTGCCTGAAGTGGCGGACTTGCTGCAA
TCCTTCAGGTTTCTCCCAAACTGGCGGTTGGATGACATCATGATAAGTTA
TGCACCCCAGGCAGGCGGGATCGGCCCACATGTCGACAATTACGATGTTT
TCCTCCTCCAAAGCCATGGCACCCGTCGCTGGTCCATCCAAAACTCCCTT
CTGTCCGCCGCGGACGAACTCTCCTCCCTCCTTCCTAACAGCCCTGTCCG
GGTTCTGGGCACCTGGGAGGAGGACCACTCATGGGTGTTACGACCTGGGG
ACATGCTGTACCTTCCCCCCCGGGTTCCTCACAATGGCGTTAGTCTCGAC
AAAGACTGCATGACCTACTCGATTGGTTTTCGGGCGCCCACCCAGGCGGA
GCTACTACATGCAGCGATCACTGCTGCTGCTGCTGCTGCTGCTGCGGCAT
CCGGGCAAACTTTTTACAGCGATCAGTCTCTTGCCTTGCCGAGAGATGCG
GGTGAGATCACTCCCAACGCATTGAGTCAGTTAAAAGAGATGGTAAAAAA
AGGTATGGCCTCTGTACTGGATGATGAGTATGTTTTAGCAAGATGGATGG
GGAAACACCTGACGAGACCCAGGCAAACAAGGAGACAAAGAGTAAGGGAG
GAGGAGGAAGAAGGAAACGGGGAAGACGGGGAGGAGGGGGGAGGGGGATA
TCTAGTAGAGATAGACAGGGAAGAAGCGGAGACGATTGTGCAGGAGTTGA
TGGAAAGAGGGAAGGGGGAAGGAGAGAAGAAGGAGCAGTGGGGGGTCGTC
TATCGCGCGGAGGGTTTAAAATTTGCCCATGCATTGGAGAATAGTCTCTT
GTTTGTGGACGGACATGTGTGGGAGTTGAAGGACGAAGACGGGGAACGAC
GGTGGAGGGTGTGTGCGTGCTTGACTGGAGGGCCGTCACCTTTGCCAGCG
GATGAATTGAAGGAGCTCCTTAATTCGAGCCCTGAGTGTTCTGAGATCGT
GAGGGAGTGGTTGGAACGAGGGTTCTTGTATGTTCTGGGTGAAGAAACAG
TGGTGGTGGAGGAGGAATGA
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protein sequence of jgi.p|Nanoce1779_2|534259

>mRNA_10681-protein ID=mRNA_10681-protein|Name=jgi.p|Nanoce1779_2|534259|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MPNHKRQHCASSSSFSHDAKTIHLPAPPAEWTGGLPQNKHVLFLREFWQQ
KPLLIRQAFDPAVAVVGPNELLSLACDDMVTSRLIEHRPHSGRDKQAGQE
EDEKDSEWSVRQGPFDEEDFEDDPEGGERTWTVLVQEVDRHVPEVADLLQ
SFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSL
LSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLD
KDCMTYSIGFRAPTQAELLHAAITAAAAAAAAASGQTFYSDQSLALPRDA
GEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQTRRQRVRE
EEEEGNGEDGEEGGGGYLVEIDREEAETIVQELMERGKGEGEKKEQWGVV
YRAEGLKFAHALENSLLFVDGHVWELKDEDGERRWRVCACLTGGPSPLPA
DELKELLNSSPECSEIVREWLERGFLYVLGEETVVVEEE*
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mRNA from alignment at scaffold_76:24789..26410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10681 ID=mRNA_10681|Name=jgi.p|Nanoce1779_2|534259|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp|location=Sequence derived from alignment at scaffold_76:24789..26410- (Nannochloropsis oceanica)
ATGCCCAACCACAAACGCCAGCATTGCGCATCCTCCTCGTCCTTTTCTCA
TGACGCCAAAACTATTCACTTGCCCGCCCCCCCTGCGGAGTGGACAGGGG
GGCTGCCACAAAACAAGCACGTCTTATTCTTGCGTGAATTTTGGCAACAA
AAGCCGCTATTGATTCGACAGGCTTTTGATCCAGCTGTGGCGGTGGTGGG
ACCGAATGAGCTGCTATCGTTGGCATGCGATGACATGGTGACGTCGCGCT
TGATCGAGCACCGGCCACACAGCGGAAGAGACAAACAGGCTGGACAGGAG
GAAGATGAAAAAGACAGTGAATGGAGTGTGCGGCAAGGACCTTTTGACGA
GGAGGATTTTGAAGACGACCCGGAGGGGGGGGAGAGGACGTGGACGGTGT
TGGTACAGGAGGTGGATAGGCATGTGCCTGAAGTGGCGGACTTGCTGCAA
TCCTTCAGGTTTCTCCCAAACTGGCGGTTGGATGACATGTACGTTCACGA
GAATTAAATGACTGCGATTTATTGCCTAAAATTTCGAAATTCATTGCGAG
CTCACTTTGACAATCCGCGCTCACCAATTCCATTCCTTTCTTCCCTTCTC
CGCCTCCCCTCCCCGCCACTCACGCCCACATAACACACAGCATGATAAGT
TATGCACCCCAGGCAGGCGGGATCGGCCCACATGTCGACAATTACGATGT
TTTCCTCCTCCAAAGCCATGGCACCCGTCGCTGGTCCATCCAAAACTCCC
TTCTGTCCGCCGCGGACGAACTCTCCTCCCTCCTTCCTAACAGCCCTGTC
CGGGTTCTGGGCACCTGGGAGGAGGACCACTCATGGGTGTTACGACCTGG
GGACATGCTGTACCTTCCCCCCCGGGTTCCTCACAATGGCGTTAGTCTCG
ACAAAGACTGCATGACCTACTCGATTGGTTTTCGGGCGCCCACCCAGGCG
GAGCTACTACATGCAGCGATCACTGCTGCTGCTGCTGCTGCTGCTGCGGC
ATCCGGGCAAACTTTTTACAGCGATCAGTCTCTTGCCTTGCCGAGAGATG
CGGGTGAGATCACTCCCAACGCATTGAGTCAGTTAAAAGAGATGGTAAAA
AAAGGTATGGCCTCTGTACTGGATGATGAGTATGTTTTAGCAAGATGGAT
GGGGAAACACCTGACGAGACCCAGGCAAACAAGGAGACAAAGAGTAAGGG
AGGAGGAGGAAGAAGGAAACGGGGAAGACGGGGAGGAGGGGGGAGGGGGA
TATCTAGTAGAGATAGACAGGGAAGAAGCGGAGACGATTGTGCAGGAGTT
GATGGAAAGAGGGAAGGGGGAAGGAGAGAAGAAGGAGCAGTGGGGGGTCG
TCTATCGCGCGGAGGGTTTAAAATTTGCCCATGCATTGGAGAATAGTCTC
TTGTTTGTGGACGGACATGTGTGGGAGTTGAAGGACGAAGACGGGGAACG
ACGGTGGAGGGTGTGTGCGTGCTTGACTGGAGGGCCGTCACCTTTGCCAG
CGGATGAATTGAAGGAGCTCCTTAATTCGAGCCCTGAGTGTTCTGAGATC
GTGAGGGAGTGGTTGGAACGAGGGTTCTTGTATGTTCTGGGTGAAGAAAC
AGTGGTGGTGGAGGAGGAATGA
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Coding sequence (CDS) from alignment at scaffold_76:24789..26410-

>mRNA_10681 ID=mRNA_10681|Name=jgi.p|Nanoce1779_2|534259|organism=Nannochloropsis oceanica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_76:24789..26410- (Nannochloropsis oceanica)
CATGATAAGTTATGCACCCCAGGCAGGCGGGATCGGCCCACATGTCGACA
ATTACGATGTTTTCCTCCTCCAAAGCCATGGCACCCGTCGCTGGTCCATC
CAAAACTCCCTTCTGTCCGCCGCGGACGAACTCTCCTCCCTCCTTCCTAA
CAGCCCTGTCCGGGTTCTGGGCACCTGGGAGGAGGACCACTCATGGGTGT
TACGACCTGGGGACATGCTGTACCTTCCCCCCCGGGTTCCTCACAATGGC
GTTAGTCTCGACAAAGACTGCATGACCTACTCGATTGGTTTTCGGGCGCC
CACCCAGGCGGAGCTACTACATGCAGCGATCACTGCTGCTGCTGCTGCTG
CTGCTGCGGCATCCGGGCAAACTTTTTACAGCGATCAGTCTCTTGCCTTG
CCGAGAGATGCGGGTGAGATCACTCCCAACGCATTGAGTCAGTTAAAAGA
GATGGTAAAAAAAGGTATGGCCTCTGTACTGGATGATGAGTATGTTTTAG
CAAGATGGATGGGGAAACACCTGACGAGACCCAGGCAAACAAGGAGACAA
AGAGTAAGGGAGGAGGAGGAAGAAGGAAACGGGGAAGACGGGGAGGAGGG
GGGAGGGGGATATCTAGTAGAGATAGACAGGGAAGAAGCGGAGACGATTG
TGCAGGAGTTGATGGAAAGAGGGAAGGGGGAAGGAGAGAAGAAGGAGCAG
TGGGGGGTCGTCTATCGCGCGGAGGGTTTAAAATTTGCCCATGCATTGGA
GAATAGTCTCTTGTTTGTGGACGGACATGTGTGGGAGTTGAAGGACGAAG
ACGGGGAACGACGGTGGAGGGTGTGTGCGTGCTTGACTGGAGGGCCGTCA
CCTTTGCCAGCGGATGAATTGAAGGAGCTCCTTAATTCGAGCCCTGAGTG
TTCTGAGATCGTGAGGGAGTGGTTGGAACGAGGGTTCTTGTATGTTCTGG
GTGAAGAAACAGTGGTGGTGGAGGAGGAATGAATGCCCAACCACAAACGC
CAGCATTGCGCATCCTCCTCGTCCTTTTCTCATGACGCCAAAACTATTCA
CTTGCCCGCCCCCCCTGCGGAGTGGACAGGGGGGCTGCCACAAAACAAGC
ACGTCTTATTCTTGCGTGAATTTTGGCAACAAAAGCCGCTATTGATTCGA
CAGGCTTTTGATCCAGCTGTGGCGGTGGTGGGACCGAATGAGCTGCTATC
GTTGGCATGCGATGACATGGTGACGTCGCGCTTGATCGAGCACCGGCCAC
ACAGCGGAAGAGACAAACAGGCTGGACAGGAGGAAGATGAAAAAGACAGT
GAATGGAGTGTGCGGCAAGGACCTTTTGACGAGGAGGATTTTGAAGACGA
CCCGGAGGGGGGGGAGAGGACGTGGACGGTGTTGGTACAGGAGGTGGATA
GGCATGTGCCTGAAGTGGCGGACTTGCTGCAATCCTTCAGGTTTCTCCCA
AACTGGCGGTTGGATGACATCATGATAAGTTATGCACCCCAGGCAGGCGG
GATCGGCCCACATGTCGACAATTACGATGTTTTCCTCCTCCAAAGCCATG
GCACCCGTCGCTGGTCCATCCAAAACTCCCTTCTGTCCGCCGCGGACGAA
CTCTCCTCCCTCCTTCCTAACAGCCCTGTCCGGGTTCTGGGCACCTGGGA
GGAGGACCACTCATGGGTGTTACGACCTGGGGACATGCTGTACCTTCCCC
CCCGGGTTCCTCACAATGGCGTTAGTCTCGACAAAGACTGCATGACCTAC
TCGATTGGTTTTCGGGCGCCCACCCAGGCGGAGCTACTACATGCAGCGAT
CACTGCTGCTGCTGCTGCTGCTGCTGCGGCATCCGGGCAAACTTTTTACA
GCGATCAGTCTCTTGCCTTGCCGAGAGATGCGGGTGAGATCACTCCCAAC
GCATTGAGTCAGTTAAAAGAGATGGTAAAAAAAGGTATGGCCTCTGTACT
GGATGATGAGTATGTTTTAGCAAGATGGATGGGGAAACACCTGACGAGAC
CCAGGCAAACAAGGAGACAAAGAGTAAGGGAGGAGGAGGAAGAAGGAAAC
GGGGAAGACGGGGAGGAGGGGGGAGGGGGATATCTAGTAGAGATAGACAG
GGAAGAAGCGGAGACGATTGTGCAGGAGTTGATGGAAAGAGGGAAGGGGG
AAGGAGAGAAGAAGGAGCAGTGGGGGGTCGTCTATCGCGCGGAGGGTTTA
AAATTTGCCCATGCATTGGAGAATAGTCTCTTGTTTGTGGACGGACATGT
GTGGGAGTTGAAGGACGAAGACGGGGAACGACGGTGGAGGGTGTGTGCGT
GCTTGACTGGAGGGCCGTCACCTTTGCCAGCGGATGAATTGAAGGAGCTC
CTTAATTCGAGCCCTGAGTGTTCTGAGATCGTGAGGGAGTGGTTGGAACG
AGGGTTCTTGTATGTTCTGGGTGAAGAAACAGTGGTGGTGGAGGAGGAAT
GAATGCCCAACCACAAACGCCAGCATTGCGCATCCTCCTCGTCCTTTTCT
CATGACGCCAAAACTATTCACTTGCCCGCCCCCCCTGCGGAGTGGACAGG
GGGGCTGCCACAAAACAAGCACGTCTTATTCTTGCGTGAATTTTGGCAAC
AAAAGCCGCTATTGATTCGACAGGCTTTTGATCCAGCTGTGGCGGTGGTG
GGACCGAATGAGCTGCTATCGTTGGCATGCGATGACATGGTGACGTCGCG
CTTGATCGAGCACCGGCCACACAGCGGAAGAGACAAACAGGCTGGACAGG
AGGAAGATGAAAAAGACAGTGAATGGAGTGTGCGGCAAGGACCTTTTGAC
GAGGAGGATTTTGAAGACGACCCGGAGGGGGGGGAGAGGACGTGGACGGT
GTTGGTACAGGAGGTGGATAGGCATGTGCCTGAAGTGGCGGACTTGCTGC
AATCCTTCAGGTTTCTCCCAAACTGGCGGTTGGATGACAT
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Synonyms
Publications