jgi.p|Nanoce1779_2|608018, mRNA_9074 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608018
Unique NamemRNA_9074
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length780
Alignment locationscaffold_40:59798..61245 -

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Properties
Property NameValue
TranscriptId608104
TrackFilteredModels2
ProteinId608018
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:59798..61245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608018gene_9074Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608018mRNA_9074-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9074CDS_9074Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9074 ID=mRNA_9074|Name=jgi.p|Nanoce1779_2|608018|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
AGATGACACGTTGCTCGCTTTCGCATTTGCCACGATCGTCAAGACTCTTG
TTGTGCTGCCTTCTTATCACCCCAATCCACGCCTGGACTCTCCCAGCCAC
TCCTTCATTGAACAACCCTCGCTCTCTGCGCATGTCGTCCTCTGCGAACG
GCGCGTCTATCACCAAATCCGTCTTATTTGTGTGCCTGGGAAACATATGT
CGCAGCCCTTCGGCTGAGGCCGTATTCAAGAGCATGGTAGCGAAAAAAAG
TCTAGCCTCACAATTTCACATTGACAGCTGCGGCACGGGCGGAGGCAACC
CGGGCTGGTATCAAGAGGGTGGCTGGAGCTATCATGAAGGCGATAGGGCC
GACAGCCGCATGAGAGCCGCCGCCTCCAAACGCGGCATTGACATTACTTC
GTTATCCCGCGCTCTGACAGCCGAGGATGTCGACAAATTCGATTTGTTGG
TCTGCATGGATGGAGCCAACAAGAGCGCAGTGATGGAGGCAGCTGACTAT
TGGGGAAAAACCTCTGTAGCAGCAAGCAAAATCAGGCTCATGACTGAGTA
CTGCACGATCAACAAGGGAGCAAGGATGGTGCCAGACCCTTACTACGGCG
GTGCAGACGGCTTCGATAAGGTGCTGGACTTACTCGAAGATGCCTGTGAG
GGCCTATTGGCAAGCATGTAGAGAGAGAGAAGAGGACACAAGCAAACCTG
CTTCGAGGTTTGAAAGGATGGAATCACAGATGTTGTTATAGACTTTTTTT
TTGCCGCCGATGCCATTATTTTCTTGCCTA
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protein sequence of jgi.p|Nanoce1779_2|608018

>mRNA_9074-protein ID=mRNA_9074-protein|Name=jgi.p|Nanoce1779_2|608018|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MTRCSLSHLPRSSRLLLCCLLITPIHAWTLPATPSLNNPRSLRMSSSANG
ASITKSVLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSCGTGGGNP
GWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLV
CMDGANKSAVMEAADYWGKTSVAASKIRLMTEYCTINKGARMVPDPYYGG
ADGFDKVLDLLEDACEGLLASM*
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mRNA from alignment at scaffold_40:59798..61245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9074 ID=mRNA_9074|Name=jgi.p|Nanoce1779_2|608018|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp|location=Sequence derived from alignment at scaffold_40:59798..61245- (Nannochloropsis oceanica)
AGATGACACGTTGCTCGCTTTCGCATTTGCCACGATCGTCAAGACTCTTG
TTGTGCTGCCTTCTTATCACCCCAATCCACGCCTGGACTCTCCCAGCCAC
TCCTTCATTGAACAACCCTCGCTCTCTGCGCATGTCGTCCTCTGCGAACG
GCGCGTCTATCACCAAATCCGTCTTATTTGTGTGCCTGGGAAACATATGT
CGCAGCCCTTCGGTGAGTGAATAAGTCAGACACGCGGCTCAGCCAAGACC
CCCCGCATCGTTTCCACCTTCATCCTCACCACCCCTCTCACACCGACCGG
CGCAGGCTGAGGCCGTATTCAAGAGCATGGTAGCGAAAAAAAGTCTAGGT
AAGCAACCTGAATCCTATCCTTCTTTTCTTATCCCCGTCTTTTTTGTCTC
CCACGCGCACCTTTCCACAAAGCCTCCTCATTCCAATTTTGCTGCCGCCA
GCCACCTTTAACATGTATCCTCTTGTTCAACCACACCAACTCGCTTCCGT
CTTTCCTTTCTGTGCGTTCATTCTGCCAGAAATGCCAGTTCCAACACACT
CACACACAATTGAAAGCCACCAGCTCCCCCATTCACACTCTGATGCTCAT
TCATTCTCTCACTCACTCTGCGGTTACATGTCCCAAAGCCTCACAATTTC
ACATTGACAGCTGCGGCACGGGCGGAGGCAACCCGGGCTGGTATCAAGAG
GGTGGCTGGAGCTATCATGAAGGCGATAGGGCCGACAGCCGCATGAGAGC
CGCCGCCTCCAAACGCGGCATTGACATTACTTCGTTATCCCGCGCTCTGA
CAGCCGAGGATGTCGACAAATTCGATTTGTTGGTCTGCATGGATGGAGCC
AACAAGAGCGCAGTGATGGAGGCAGCTGACTATTGGGGAAAAACCTCTGT
AGCAGCAAGCAAAATCAGGCTCATGACTGAGTACTGCACGATCAACAAGG
GAGCAAGGTAAGGAAGAGGAGGAGGAGAAGGAGGAGGAGAAAGAGAGGGG
TGGGGGGCGGGGGAAGGAGGAGAGATGGTAGTCGTAGTAGTAGTGGTGGT
ATTGAAATTAAGGAGAGCAATTGTGCTGCTGCTGGCAGGGTGCAGCGGAG
AGTGCATGCACACATCCATTTCCGCAAGTGAGTCCCATGCTTCAATTTCG
AGGTCTGTTTCTCGCTCACCAAGGCCGGTTTTCACTCTTTTTCCATTAAA
ATTTCCTAACTTACACGTATATGCCCTTTCAATCAAAACCAGGATGGTGC
CAGACCCTTACTACGGCGGTGCAGACGGCTTCGATAAGGTGCTGGACTTA
CTCGAAGATGCCTGTGAGGGCCTATTGGCAAGCATGTAGAGAGAGAGAAG
AGGACACAAGCAAACCTGCTTCGAGGTTTGAAAGGATGGAATCACAGATG
TTGTTATAGACTTTTTTTTTGCCGCCGATGCCATTATTTTCTTGCCTA
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Coding sequence (CDS) from alignment at scaffold_40:59798..61245-

>mRNA_9074 ID=mRNA_9074|Name=jgi.p|Nanoce1779_2|608018|organism=Nannochloropsis oceanica|type=CDS|length=2676bp|location=Sequence derived from alignment at scaffold_40:59798..61245- (Nannochloropsis oceanica)
GATGGTGCCAGACCCTTACTACGGCGGTGCAGACGGCTTCGATAAGGTGC
TGGACTTACTCGAAGATGCCTGTGAGGGCCTATTGGCAAGCATGTAGCCT
CACAATTTCACATTGACAGCTGCGGCACGGGCGGAGGCAACCCGGGCTGG
TATCAAGAGGGTGGCTGGAGCTATCATGAAGGCGATAGGGCCGACAGCCG
CATGAGAGCCGCCGCCTCCAAACGCGGCATTGACATTACTTCGTTATCCC
GCGCTCTGACAGCCGAGGATGTCGACAAATTCGATTTGTTGGTCTGCATG
GATGGAGCCAACAAGAGCGCAGTGATGGAGGCAGCTGACTATTGGGGAAA
AACCTCTGTAGCAGCAAGCAAAATCAGGCTCATGACTGAGTACTGCACGA
TCAACAAGGGAGCAAGGCTGAGGCCGTATTCAAGAGCATGGTAGCGAAAA
AAAGTCTAGATGACACGTTGCTCGCTTTCGCATTTGCCACGATCGTCAAG
ACTCTTGTTGTGCTGCCTTCTTATCACCCCAATCCACGCCTGGACTCTCC
CAGCCACTCCTTCATTGAACAACCCTCGCTCTCTGCGCATGTCGTCCTCT
GCGAACGGCGCGTCTATCACCAAATCCGTCTTATTTGTGTGCCTGGGAAA
CATATGTCGCAGCCCTTCGGATGGTGCCAGACCCTTACTACGGCGGTGCA
GACGGCTTCGATAAGGTGCTGGACTTACTCGAAGATGCCTGTGAGGGCCT
ATTGGCAAGCATGTAGCCTCACAATTTCACATTGACAGCTGCGGCACGGG
CGGAGGCAACCCGGGCTGGTATCAAGAGGGTGGCTGGAGCTATCATGAAG
GCGATAGGGCCGACAGCCGCATGAGAGCCGCCGCCTCCAAACGCGGCATT
GACATTACTTCGTTATCCCGCGCTCTGACAGCCGAGGATGTCGACAAATT
CGATTTGTTGGTCTGCATGGATGGAGCCAACAAGAGCGCAGTGATGGAGG
CAGCTGACTATTGGGGAAAAACCTCTGTAGCAGCAAGCAAAATCAGGCTC
ATGACTGAGTACTGCACGATCAACAAGGGAGCAAGGCTGAGGCCGTATTC
AAGAGCATGGTAGCGAAAAAAAGTCTAGATGACACGTTGCTCGCTTTCGC
ATTTGCCACGATCGTCAAGACTCTTGTTGTGCTGCCTTCTTATCACCCCA
ATCCACGCCTGGACTCTCCCAGCCACTCCTTCATTGAACAACCCTCGCTC
TCTGCGCATGTCGTCCTCTGCGAACGGCGCGTCTATCACCAAATCCGTCT
TATTTGTGTGCCTGGGAAACATATGTCGCAGCCCTTCGGATGGTGCCAGA
CCCTTACTACGGCGGTGCAGACGGCTTCGATAAGGTGCTGGACTTACTCG
AAGATGCCTGTGAGGGCCTATTGGCAAGCATGTAGCCTCACAATTTCACA
TTGACAGCTGCGGCACGGGCGGAGGCAACCCGGGCTGGTATCAAGAGGGT
GGCTGGAGCTATCATGAAGGCGATAGGGCCGACAGCCGCATGAGAGCCGC
CGCCTCCAAACGCGGCATTGACATTACTTCGTTATCCCGCGCTCTGACAG
CCGAGGATGTCGACAAATTCGATTTGTTGGTCTGCATGGATGGAGCCAAC
AAGAGCGCAGTGATGGAGGCAGCTGACTATTGGGGAAAAACCTCTGTAGC
AGCAAGCAAAATCAGGCTCATGACTGAGTACTGCACGATCAACAAGGGAG
CAAGGCTGAGGCCGTATTCAAGAGCATGGTAGCGAAAAAAAGTCTAGATG
ACACGTTGCTCGCTTTCGCATTTGCCACGATCGTCAAGACTCTTGTTGTG
CTGCCTTCTTATCACCCCAATCCACGCCTGGACTCTCCCAGCCACTCCTT
CATTGAACAACCCTCGCTCTCTGCGCATGTCGTCCTCTGCGAACGGCGCG
TCTATCACCAAATCCGTCTTATTTGTGTGCCTGGGAAACATATGTCGCAG
CCCTTCGGATGGTGCCAGACCCTTACTACGGCGGTGCAGACGGCTTCGAT
AAGGTGCTGGACTTACTCGAAGATGCCTGTGAGGGCCTATTGGCAAGCAT
GTAGCCTCACAATTTCACATTGACAGCTGCGGCACGGGCGGAGGCAACCC
GGGCTGGTATCAAGAGGGTGGCTGGAGCTATCATGAAGGCGATAGGGCCG
ACAGCCGCATGAGAGCCGCCGCCTCCAAACGCGGCATTGACATTACTTCG
TTATCCCGCGCTCTGACAGCCGAGGATGTCGACAAATTCGATTTGTTGGT
CTGCATGGATGGAGCCAACAAGAGCGCAGTGATGGAGGCAGCTGACTATT
GGGGAAAAACCTCTGTAGCAGCAAGCAAAATCAGGCTCATGACTGAGTAC
TGCACGATCAACAAGGGAGCAAGGCTGAGGCCGTATTCAAGAGCATGGTA
GCGAAAAAAAGTCTAGATGACACGTTGCTCGCTTTCGCATTTGCCACGAT
CGTCAAGACTCTTGTTGTGCTGCCTTCTTATCACCCCAATCCACGCCTGG
ACTCTCCCAGCCACTCCTTCATTGAACAACCCTCGCTCTCTGCGCATGTC
GTCCTCTGCGAACGGCGCGTCTATCACCAAATCCGTCTTATTTGTGTGCC
TGGGAAACATATGTCGCAGCCCTTCG
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Synonyms
Publications