jgi.p|Nanoce1779_2|610447, mRNA_10217 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610447
Unique Name	mRNA_10217
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2318
Alignment location	scaffold_50:36020..38337 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610533
Track	FilteredModels2
ProteinId	610447

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:36020..38337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610447	gene_10217	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610447	mRNA_10217-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10217	CDS_10217	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:36020..38337+
coding sequence from alignment at scaffold_50:36020..38337+

mRNA sequence

>mRNA_10217 ID=mRNA_10217|Name=jgi.p|Nanoce1779_2|610447|organism=Nannochloropsis oceanica|type=mRNA|length=2318bp
TGGGTGCAGTTAACTCACTAGGGGGCGGGGTGATGATTAAGACGGGCGTC
TCTCAGTCAGCCTGGGCAGGGTGTCAGTTCTTGGCGACACTCGGTATTGC
GGTATTTGTCGGGGCGGGCGTTGTGGTGGAGAGCGAGTGTGTCTGGGCGA
GGGTGGGGGCGATAACTTCTTGGTATGGAGGAGGGGGAAGCTTGTACGTA
GGTGCGGGTGTAACAACTTTTGTGAATTGTGCAGCATTGGTCGCAAATGG
GATTGTGTCTGCAGCGATCGGTGGAGGGAACGTGGCAAACTTGGCCGGAT
GGCTAACGATGGTAAATACATTTTTTCATACCACGCATGCAATTGCTGCC
ATTTATGGACAAGCTGGGGATGCCCTAGTCTTAGCAGGAGGGGCCGTGTT
TGTGAATTCCGGTTATAAAGAGAGGAATGGCATAAGGCATAGCAATCCTG
GTTTTGTCAATATCTGGGTGAGTGGCAACCCAATTTACTTAGACGATAAG
AATGTCTCTGGAGCATTGGCCACACATAAAATGCTAAGATACTTTAATTC
CTCTAGACGGTTTAAGAGTGTGGTTAAAATGGCGGGGGTGACTATCACTG
ATTATGAGCCTGAAGAGGTAAGTCGTATTTTCGGCTTCAAGACCCACCAT
AAGCACTGGCGGGCAACCCAGGAGACATTTGCCAGTATCACTACGATGGA
CGAGGCCATTGAGACTGCCATAACTGCGGAGGAGGATGACAAGAAGAGCA
GAAGCAAGAATAAGGGCCAGGGCGGGATCGACGGGGAGATGCCATTTGCG
AAGCTTCCCTGGCCTGGGATGGAGGTGGTTATTCCTCAAGTCCCTAATGA
CGTTAAAACGAAAAATGTGTATCTGGCGGGGCCATTGGATGAGTGCTCGC
TTTGTGACGTCAAGCCTGGACGGACCTCGGAGAATTTCGACGGGGTGGGA
TTGGCAGGCTGTACGATAGCTGACACCTGCGAGGGCGATTTGCTGCAAAG
TCAGGGACCGAACCTGGCAGAGCAAATGTGGAACCCCCCAAAGGACATGG
GTCTGGCCAACACGTCAATCGCGGTCCTGGAAGTTCAAACCCGCTACATG
CCTTTCTCTCCGACCGCCGCGCGAATCGACCCGGCAAGCGTGAAGCAAGC
CGTGGAGAAGGCCTCGGCTTCTCTAGGGCTGCCACAGCGTTTCCATGTGA
CAGTGGCACCGAACAACGTGATTAATCCGCTTGCGCTTGACGACGCTGAC
TACGTGGCAAGCGTGCTTGAAGACGTGTCGGACAATGGTGGCCTGAACGG
GAAGGAGTACGGCACGTCGCTCGTGGACGAGGAGGAGGAGGTGCTGGTGA
CCCAGTTGCGGGAGGGCGCGCGGAAGTTGCAGTATCAAGAGTGCTCGGTG
GGCAAGACTTTCAAGGTCTACATGGTAAGCGACTGGCGCAACGTCACGCA
GGCTCATGTCAAGGGCCTCAAGACCCAGGACGCCACTCAGCAGCTGATGT
TGGCGCTGCAGGAGGCACAGACAGGTAGTGAGACGGTGCAGATCTGCGAG
GCGAGTGTCAAAGCGGCGGGCTCGCTGTTTGTACCAGGTAGAAAGGCATC
GCTTATGCAAGGTGATACAGATGGGCTGTCGAAGCCCTTTCTTGGCTTCG
GGCAAGAAAAAGGACAACATTCGGCAGAGGCTGAGCTGAGGGATACTGTC
TCCGGTGGCCGTGTGGAGGACGTCCATAAAGGTGAGACGTACTCGCTCAA
TCTGCAGCACTTCCCTGCAGCCACACTCTTGACTGTCAAGCTGACGCCAA
GAGACGGGCTTGCGATGATGACCTTAGGAACATTTGCCTCTAAGCCTAGC
GACGACGCGGACGCGGTCCAGGTATGGCAATGGACGGTCGGGGAGAATGT
CAGACCGGGGGCATACTACTTGGAGGTGGCGACGCCGCAGATACCGAATA
GAGGAGGGGCATTGACAGGAATAGTACAAATGGTAGATAACAGCAGGCTT
GCATTCACGCAAGCGTTTGAAGTTGTGGGGTAGAGAAGGGGATGCTTCTG
ACGGTAGAGAAGGACAGGGAGAGAACACGAGATGAGAAGAGGATAGGCTG
AAGGCTCGGGAAGAAAGTATGAATGCAAGGAGAGACCAAAGGGGCAAGGA
AATACAATTTAAGAGGCATTATTTAAAACAGTGAGTCATCAAACAGATAG
CCAACGAAGGGAAAGAGGAAAGCGGGACCAATACATCTAAAAACAAGGAA
TCTTCAAAGTAACCGAGTCGCAAAGTCGCAACGACTATGCCTTGCCAGTT
CCAAAGTGTGAATTACAG

protein sequence of jgi.p|Nanoce1779_2|610447

>mRNA_10217-protein ID=mRNA_10217-protein|Name=jgi.p|Nanoce1779_2|610447|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp
MIKTGVSQSAWAGCQFLATLGIAVFVGAGVVVESECVWARVGAITSWYGG
GGSLYVGAGVTTFVNCAALVANGIVSAAIGGGNVANLAGWLTMVNTFFHT
THAIAAIYGQAGDALVLAGGAVFVNSGYKERNGIRHSNPGFVNIWVSGNP
IYLDDKNVSGALATHKMLRYFNSSRRFKSVVKMAGVTITDYEPEEVSRIF
GFKTHHKHWRATQETFASITTMDEAIETAITAEEDDKKSRSKNKGQGGID
GEMPFAKLPWPGMEVVIPQVPNDVKTKNVYLAGPLDECSLCDVKPGRTSE
NFDGVGLAGCTIADTCEGDLLQSQGPNLAEQMWNPPKDMGLANTSIAVLE
VQTRYMPFSPTAARIDPASVKQAVEKASASLGLPQRFHVTVAPNNVINPL
ALDDADYVASVLEDVSDNGGLNGKEYGTSLVDEEEEVLVTQLREGARKLQ
YQECSVGKTFKVYMVSDWRNVTQAHVKGLKTQDATQQLMLALQEAQTGSE
TVQICEASVKAAGSLFVPGRKASLMQGDTDGLSKPFLGFGQEKGQHSAEA
ELRDTVSGGRVEDVHKGETYSLNLQHFPAATLLTVKLTPRDGLAMMTLGT
FASKPSDDADAVQVWQWTVGENVRPGAYYLEVATPQIPNRGGALTGIVQM
VDNSRLAFTQAFEVVG*

mRNA from alignment at scaffold_50:36020..38337+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10217 ID=mRNA_10217|Name=jgi.p|Nanoce1779_2|610447|organism=Nannochloropsis oceanica|type=mRNA|length=2318bp|location=Sequence derived from alignment at scaffold_50:36020..38337+ (Nannochloropsis oceanica)
TGGGTGCAGTTAACTCACTAGGGGGCGGGGTGATGATTAAGACGGGCGTC
TCTCAGTCAGCCTGGGCAGGGTGTCAGTTCTTGGCGACACTCGGTATTGC
GGTATTTGTCGGGGCGGGCGTTGTGGTGGAGAGCGAGTGTGTCTGGGCGA
GGGTGGGGGCGATAACTTCTTGGTATGGAGGAGGGGGAAGCTTGTACGTA
GGTGCGGGTGTAACAACTTTTGTGAATTGTGCAGCATTGGTCGCAAATGG
GATTGTGTCTGCAGCGATCGGTGGAGGGAACGTGGCAAACTTGGCCGGAT
GGCTAACGATGGTAAATACATTTTTTCATACCACGCATGCAATTGCTGCC
ATTTATGGACAAGCTGGGGATGCCCTAGTCTTAGCAGGAGGGGCCGTGTT
TGTGAATTCCGGTTATAAAGAGAGGAATGGCATAAGGCATAGCAATCCTG
GTTTTGTCAATATCTGGGTGAGTGGCAACCCAATTTACTTAGACGATAAG
AATGTCTCTGGAGCATTGGCCACACATAAAATGCTAAGATACTTTAATTC
CTCTAGACGGTTTAAGAGTGTGGTTAAAATGGCGGGGGTGACTATCACTG
ATTATGAGCCTGAAGAGGTAAGTCGTATTTTCGGCTTCAAGACCCACCAT
AAGCACTGGCGGGCAACCCAGGAGACATTTGCCAGTATCACTACGATGGA
CGAGGCCATTGAGACTGCCATAACTGCGGAGGAGGATGACAAGAAGAGCA
GAAGCAAGAATAAGGGCCAGGGCGGGATCGACGGGGAGATGCCATTTGCG
AAGCTTCCCTGGCCTGGGATGGAGGTGGTTATTCCTCAAGTCCCTAATGA
CGTTAAAACGAAAAATGTGTATCTGGCGGGGCCATTGGATGAGTGCTCGC
TTTGTGACGTCAAGCCTGGACGGACCTCGGAGAATTTCGACGGGGTGGGA
TTGGCAGGCTGTACGATAGCTGACACCTGCGAGGGCGATTTGCTGCAAAG
TCAGGGACCGAACCTGGCAGAGCAAATGTGGAACCCCCCAAAGGACATGG
GTCTGGCCAACACGTCAATCGCGGTCCTGGAAGTTCAAACCCGCTACATG
CCTTTCTCTCCGACCGCCGCGCGAATCGACCCGGCAAGCGTGAAGCAAGC
CGTGGAGAAGGCCTCGGCTTCTCTAGGGCTGCCACAGCGTTTCCATGTGA
CAGTGGCACCGAACAACGTGATTAATCCGCTTGCGCTTGACGACGCTGAC
TACGTGGCAAGCGTGCTTGAAGACGTGTCGGACAATGGTGGCCTGAACGG
GAAGGAGTACGGCACGTCGCTCGTGGACGAGGAGGAGGAGGTGCTGGTGA
CCCAGTTGCGGGAGGGCGCGCGGAAGTTGCAGTATCAAGAGTGCTCGGTG
GGCAAGACTTTCAAGGTCTACATGGTAAGCGACTGGCGCAACGTCACGCA
GGCTCATGTCAAGGGCCTCAAGACCCAGGACGCCACTCAGCAGCTGATGT
TGGCGCTGCAGGAGGCACAGACAGGTAGTGAGACGGTGCAGATCTGCGAG
GCGAGTGTCAAAGCGGCGGGCTCGCTGTTTGTACCAGGTAGAAAGGCATC
GCTTATGCAAGGTGATACAGATGGGCTGTCGAAGCCCTTTCTTGGCTTCG
GGCAAGAAAAAGGACAACATTCGGCAGAGGCTGAGCTGAGGGATACTGTC
TCCGGTGGCCGTGTGGAGGACGTCCATAAAGGTGAGACGTACTCGCTCAA
TCTGCAGCACTTCCCTGCAGCCACACTCTTGACTGTCAAGCTGACGCCAA
GAGACGGGCTTGCGATGATGACCTTAGGAACATTTGCCTCTAAGCCTAGC
GACGACGCGGACGCGGTCCAGGTATGGCAATGGACGGTCGGGGAGAATGT
CAGACCGGGGGCATACTACTTGGAGGTGGCGACGCCGCAGATACCGAATA
GAGGAGGGGCATTGACAGGAATAGTACAAATGGTAGATAACAGCAGGCTT
GCATTCACGCAAGCGTTTGAAGTTGTGGGGTAGAGAAGGGGATGCTTCTG
ACGGTAGAGAAGGACAGGGAGAGAACACGAGATGAGAAGAGGATAGGCTG
AAGGCTCGGGAAGAAAGTATGAATGCAAGGAGAGACCAAAGGGGCAAGGA
AATACAATTTAAGAGGCATTATTTAAAACAGTGAGTCATCAAACAGATAG
CCAACGAAGGGAAAGAGGAAAGCGGGACCAATACATCTAAAAACAAGGAA
TCTTCAAAGTAACCGAGTCGCAAAGTCGCAACGACTATGCCTTGCCAGTT
CCAAAGTGTGAATTACAG

Coding sequence (CDS) from alignment at scaffold_50:36020..38337+

>mRNA_10217 ID=mRNA_10217|Name=jgi.p|Nanoce1779_2|610447|organism=Nannochloropsis oceanica|type=CDS|length=2001bp|location=Sequence derived from alignment at scaffold_50:36020..38337+ (Nannochloropsis oceanica)
ATGATTAAGACGGGCGTCTCTCAGTCAGCCTGGGCAGGGTGTCAGTTCTT
GGCGACACTCGGTATTGCGGTATTTGTCGGGGCGGGCGTTGTGGTGGAGA
GCGAGTGTGTCTGGGCGAGGGTGGGGGCGATAACTTCTTGGTATGGAGGA
GGGGGAAGCTTGTACGTAGGTGCGGGTGTAACAACTTTTGTGAATTGTGC
AGCATTGGTCGCAAATGGGATTGTGTCTGCAGCGATCGGTGGAGGGAACG
TGGCAAACTTGGCCGGATGGCTAACGATGGTAAATACATTTTTTCATACC
ACGCATGCAATTGCTGCCATTTATGGACAAGCTGGGGATGCCCTAGTCTT
AGCAGGAGGGGCCGTGTTTGTGAATTCCGGTTATAAAGAGAGGAATGGCA
TAAGGCATAGCAATCCTGGTTTTGTCAATATCTGGGTGAGTGGCAACCCA
ATTTACTTAGACGATAAGAATGTCTCTGGAGCATTGGCCACACATAAAAT
GCTAAGATACTTTAATTCCTCTAGACGGTTTAAGAGTGTGGTTAAAATGG
CGGGGGTGACTATCACTGATTATGAGCCTGAAGAGGTAAGTCGTATTTTC
GGCTTCAAGACCCACCATAAGCACTGGCGGGCAACCCAGGAGACATTTGC
CAGTATCACTACGATGGACGAGGCCATTGAGACTGCCATAACTGCGGAGG
AGGATGACAAGAAGAGCAGAAGCAAGAATAAGGGCCAGGGCGGGATCGAC
GGGGAGATGCCATTTGCGAAGCTTCCCTGGCCTGGGATGGAGGTGGTTAT
TCCTCAAGTCCCTAATGACGTTAAAACGAAAAATGTGTATCTGGCGGGGC
CATTGGATGAGTGCTCGCTTTGTGACGTCAAGCCTGGACGGACCTCGGAG
AATTTCGACGGGGTGGGATTGGCAGGCTGTACGATAGCTGACACCTGCGA
GGGCGATTTGCTGCAAAGTCAGGGACCGAACCTGGCAGAGCAAATGTGGA
ACCCCCCAAAGGACATGGGTCTGGCCAACACGTCAATCGCGGTCCTGGAA
GTTCAAACCCGCTACATGCCTTTCTCTCCGACCGCCGCGCGAATCGACCC
GGCAAGCGTGAAGCAAGCCGTGGAGAAGGCCTCGGCTTCTCTAGGGCTGC
CACAGCGTTTCCATGTGACAGTGGCACCGAACAACGTGATTAATCCGCTT
GCGCTTGACGACGCTGACTACGTGGCAAGCGTGCTTGAAGACGTGTCGGA
CAATGGTGGCCTGAACGGGAAGGAGTACGGCACGTCGCTCGTGGACGAGG
AGGAGGAGGTGCTGGTGACCCAGTTGCGGGAGGGCGCGCGGAAGTTGCAG
TATCAAGAGTGCTCGGTGGGCAAGACTTTCAAGGTCTACATGGTAAGCGA
CTGGCGCAACGTCACGCAGGCTCATGTCAAGGGCCTCAAGACCCAGGACG
CCACTCAGCAGCTGATGTTGGCGCTGCAGGAGGCACAGACAGGTAGTGAG
ACGGTGCAGATCTGCGAGGCGAGTGTCAAAGCGGCGGGCTCGCTGTTTGT
ACCAGGTAGAAAGGCATCGCTTATGCAAGGTGATACAGATGGGCTGTCGA
AGCCCTTTCTTGGCTTCGGGCAAGAAAAAGGACAACATTCGGCAGAGGCT
GAGCTGAGGGATACTGTCTCCGGTGGCCGTGTGGAGGACGTCCATAAAGG
TGAGACGTACTCGCTCAATCTGCAGCACTTCCCTGCAGCCACACTCTTGA
CTGTCAAGCTGACGCCAAGAGACGGGCTTGCGATGATGACCTTAGGAACA
TTTGCCTCTAAGCCTAGCGACGACGCGGACGCGGTCCAGGTATGGCAATG
GACGGTCGGGGAGAATGTCAGACCGGGGGCATACTACTTGGAGGTGGCGA
CGCCGCAGATACCGAATAGAGGAGGGGCATTGACAGGAATAGTACAAATG
GTAGATAACAGCAGGCTTGCATTCACGCAAGCGTTTGAAGTTGTGGGGTA
G

Synonyms

Publications