jgi.p|Nanoce1779_2|350517, mRNA_10376 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|350517
Unique NamemRNA_10376
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length905
Alignment locationscaffold_55:39267..40171 +

Link to JBrowse

Properties
Property NameValue
TranscriptId350603
TrackFilteredModels2
ProteinId350517
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:39267..40171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|350517gene_10376Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|350517mRNA_10376-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10376CDS_10376Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10376 ID=mRNA_10376|Name=jgi.p|Nanoce1779_2|350517|organism=Nannochloropsis oceanica|type=mRNA|length=905bp
TTTCTGCATGCTAATTTTCATATTTCTTTGAAAAGAGGTCGTTCCGTGTA
CACAGCAGCCGTCATGTCTTTCTCCTTCCCTTCCTCGCTCCATGACTGCA
CATGGTCGTTGTGGACCCGGGAGGCATGTCAAGAGCAAGCGCGGCACGGT
CGAACAGTCTCCCCCACTCTGTTCTTATTATTTTTCCTTTTTTTGTTTCG
AATTTATTGACACTTTTGCTTTTACTTTTGTCATCTACACTGTCCTCCCG
CCCTCTCTCCCTCTCTCTCGGCCATCTCTCCTCCTTCCTACTTCTCCTCT
TCTTCCTTTCCTCCTACATCCCTCCTCTTACCTCCCTCTCCACGCCATTC
CACCTTCTCACCCCACCTCCCTTCCTCCCTCCCTCCCCCGCCCCCTACCA
ATCTTCCTCCTCCTCCCTCCTCCTTGCAAGCACCGCAGTCTCCATCAAGA
GCGTGAAGGCGCTATTCACCTCCTTGAACTTCTGGCTGCTCTTCACGCGC
TCCTCCGGGGGCGCTCTAGAAAATAGAGGGAGAGAGGGAAGGAGGGAAGG
AGGGAAGACGATGACAAAAATCTACGTAAATTCGACGGGCGACAACTTAG
AGACCCTCCTCCCCCTTCCTCCCTCCTCACCTGTCCGGGTGGCATTCCAT
GGCCTTTCTCCTGAAAGCTTCCTTCAGCTCTTCCTCCTTCACGTCCGCCT
CCTCCGGGCGCGGCGAGAGACCGAGCACCCTCAAGGCCTTGGCGCGCTTT
TCGGAGAAGGAGGAAGGAGGGAAGGAGGGCTGGAAAGAGGGATGGGGGGG
GGGAGGTGAGCGAAAAAGAAACAAAGATCCCAAGGGAGGATCCAAAGCGG
GGGGGTTAGTGCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CTTCT
back to top

protein sequence of jgi.p|Nanoce1779_2|350517

>mRNA_10376-protein ID=mRNA_10376-protein|Name=jgi.p|Nanoce1779_2|350517|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MVVVDPGGMSRASAARSNSLPHSVLIIFPFFVSNLLTLLLLLLSSTLSSR
PLSLSLGHLSSFLLLLFFLSSYIPPLTSLSTPFHLLTPPPFLPPSPAPYQ
SSSSSLLLASTAVSIKSVKALFTSLNFWLLFTRSSGGALENRGREGRREG
GKTMTKIYVNSTGDNLETLLPLPPSSPVRVAFHGLSPESFLQLFLLHVRL
LRARRETEHPQGLGALFGEGGRREGGLERGMGGGR*
back to top

mRNA from alignment at scaffold_55:39267..40171+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10376 ID=mRNA_10376|Name=jgi.p|Nanoce1779_2|350517|organism=Nannochloropsis oceanica|type=mRNA|length=905bp|location=Sequence derived from alignment at scaffold_55:39267..40171+ (Nannochloropsis oceanica)
TTTCTGCATGCTAATTTTCATATTTCTTTGAAAAGAGGTCGTTCCGTGTA
CACAGCAGCCGTCATGTCTTTCTCCTTCCCTTCCTCGCTCCATGACTGCA
CATGGTCGTTGTGGACCCGGGAGGCATGTCAAGAGCAAGCGCGGCACGGT
CGAACAGTCTCCCCCACTCTGTTCTTATTATTTTTCCTTTTTTTGTTTCG
AATTTATTGACACTTTTGCTTTTACTTTTGTCATCTACACTGTCCTCCCG
CCCTCTCTCCCTCTCTCTCGGCCATCTCTCCTCCTTCCTACTTCTCCTCT
TCTTCCTTTCCTCCTACATCCCTCCTCTTACCTCCCTCTCCACGCCATTC
CACCTTCTCACCCCACCTCCCTTCCTCCCTCCCTCCCCCGCCCCCTACCA
ATCTTCCTCCTCCTCCCTCCTCCTTGCAAGCACCGCAGTCTCCATCAAGA
GCGTGAAGGCGCTATTCACCTCCTTGAACTTCTGGCTGCTCTTCACGCGC
TCCTCCGGGGGCGCTCTAGAAAATAGAGGGAGAGAGGGAAGGAGGGAAGG
AGGGAAGACGATGACAAAAATCTACGTAAATTCGACGGGCGACAACTTAG
AGACCCTCCTCCCCCTTCCTCCCTCCTCACCTGTCCGGGTGGCATTCCAT
GGCCTTTCTCCTGAAAGCTTCCTTCAGCTCTTCCTCCTTCACGTCCGCCT
CCTCCGGGCGCGGCGAGAGACCGAGCACCCTCAAGGCCTTGGCGCGCTTT
TCGGAGAAGGAGGAAGGAGGGAAGGAGGGCTGGAAAGAGGGATGGGGGGG
GGGAGGTGAGCGAAAAAGAAACAAAGATCCCAAGGGAGGATCCAAAGCGG
GGGGGTTAGTGCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CTTCT
back to top

Coding sequence (CDS) from alignment at scaffold_55:39267..40171+

>mRNA_10376 ID=mRNA_10376|Name=jgi.p|Nanoce1779_2|350517|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_55:39267..40171+ (Nannochloropsis oceanica)
ATGGTCGTTGTGGACCCGGGAGGCATGTCAAGAGCAAGCGCGGCACGGTC
GAACAGTCTCCCCCACTCTGTTCTTATTATTTTTCCTTTTTTTGTTTCGA
ATTTATTGACACTTTTGCTTTTACTTTTGTCATCTACACTGTCCTCCCGC
CCTCTCTCCCTCTCTCTCGGCCATCTCTCCTCCTTCCTACTTCTCCTCTT
CTTCCTTTCCTCCTACATCCCTCCTCTTACCTCCCTCTCCACGCCATTCC
ACCTTCTCACCCCACCTCCCTTCCTCCCTCCCTCCCCCGCCCCCTACCAA
TCTTCCTCCTCCTCCCTCCTCCTTGCAAGCACCGCAGTCTCCATCAAGAG
CGTGAAGGCGCTATTCACCTCCTTGAACTTCTGGCTGCTCTTCACGCGCT
CCTCCGGGGGCGCTCTAGAAAATAGAGGGAGAGAGGGAAGGAGGGAAGGA
GGGAAGACGATGACAAAAATCTACGTAAATTCGACGGGCGACAACTTAGA
GACCCTCCTCCCCCTTCCTCCCTCCTCACCTGTCCGGGTGGCATTCCATG
GCCTTTCTCCTGAAAGCTTCCTTCAGCTCTTCCTCCTTCACGTCCGCCTC
CTCCGGGCGCGGCGAGAGACCGAGCACCCTCAAGGCCTTGGCGCGCTTTT
CGGAGAAGGAGGAAGGAGGGAAGGAGGGCTGGAAAGAGGGATGGGGGGGG
GGAGGTGA
back to top
Synonyms
Publications