jgi.p|Nanoce1779_2|629133, gene_2827 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629133
Unique Namegene_2827
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:19148..21336 -

Link to JBrowse

Properties
Property NameValue
TranscriptId629219
ProteinId629133
Product nameTryptophan synthase beta subunit-like PLP-dependent enzyme
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:19148..21336 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0006520cellular amino acid metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00360NO05G00360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629133mRNA_2827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629133mRNA_2827Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|629133

>mRNA_2827-protein ID=mRNA_2827-protein|Name=jgi.p|Nanoce1779_2|629133|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MRYISTRGESSSSSSRLTFREAVLAGWAPDGGMLLPERIPQVTPAMLEEW
RGLSYPQLVTRLLALFVTDDGDEDYGKTEEEVPLEAIVDASFASFATPEV
VTFKALPWPSSSSSSSSSSSSSSSSSSSCSSSPSSAPSLYIAELFHGPSL
AFKDLGMQVLAHLLNFYLFKQHQKMTFLVGTSGDTGPSAAAAVKGKENMR
VIVLYPREGQSLAGSSDAGRA*
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Synonyms
Publications