jgi.p|Nanoce1779_2|629133, mRNA_2827 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629133
Unique NamemRNA_2827
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1495
Alignment locationscaffold_7:19148..21336 -

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Properties
Property NameValue
TranscriptId629219
TrackFilteredModels2
ProteinId629133
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:19148..21336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629133gene_2827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629133mRNA_2827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2827CDS_2827Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2827 ID=mRNA_2827|Name=jgi.p|Nanoce1779_2|629133|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp
GTTGTATTCTGTTATTCCCGAGAACCCCGCGGGGCCTAGGGACTCACACC
AGGCCTCCAGTTCAAAGCTTTTACAGGCGAAATTAAAATGCTCGATGGAT
GAGCAATATTGCTGCTATAATTCCATTTCGTTAGCTAGTATTCAGGAGTC
CGTAACACTTCACCCCAATGCATTTTGCCATCCCCCCATTCGTGCCACGG
AACACCATGATGGACCTTCAACTCGGCAGTGTTCGTCGTTCGTCTCGCGT
TCTGCGGGGCCAACGCAGGCACATGTACCCACCCCTTTGTACTTACCCGG
CTATTTATCACCTGCCTGGCTCTTTGCTCAATACACCTTACTCTCCTACT
CCCTCCCTCTCCTCCCTTCAGCAATACCACAGGAGTATTGATAGTCACGA
CCCAACGCCCTATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCT
TCGTCGCGCCTCACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGA
CGGAGGCATGCTCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGC
TGGAAGAATGGAGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTG
GCTTTGTTTGTGACGGACGACGGGGACGAGGATTACGGGAAGACCGAAGA
GGAAGTGCCATTGGAAGCGATTGTGGACGCCAGCTTTGCCTCCTTTGCTA
CGCCCGAGGTGGTGACATTCAAGGCCTTGCCGTGGCCTTCGTCGTCGTCG
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTGCTC
CTCCTCCCCCTCCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACG
GGCCCTCCTTGGCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATCTC
CTCAACTTCTACCTCTTCAAGCAACACCAAAAAATGACCTTTCTAGTTGG
CACATCAGGAGACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAG
AGAACATGAGGGTGATAGTATTATACCCTCGGGAGGGTCAGTCCCTTGCA
GGAAGCTCAGATGCTGGCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAG
GGGGAGGGGGAGGGGGGGAGGAAGAAGGAAGGGAAGAAGAGGGGGGAACG
TGCGGGTGGTGGCAGTGGAGGGGACAAGCGATGATCTGGACGAACCTATC
GCCGAATTGTTTCAGGATAAAGATTATAGGTCCCACCACTGCCTAGGCAG
TCTCAACAGTGTCAACATTCGTGCGTCTCCTGGTTCAAATCTTTCACTAT
TTATGCCTACCTCCACCTCATTCCCTCCTTCGGCACCTCATCGGTTGGGG
AGTGGAGTGTGCTTTACCTGTGAGGGAGGAGGAGGTAGAAGCCACCATTC
AAGCAGTCTATGAGGGAGGGAATAAGGGCGGGAAGGAGGATGGGAGGTAT
CTCCTGGACCCACACACGGCCGTGGGTGTGACGGTGGCAGCAGGG
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protein sequence of jgi.p|Nanoce1779_2|629133

>mRNA_2827-protein ID=mRNA_2827-protein|Name=jgi.p|Nanoce1779_2|629133|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MRYISTRGESSSSSSRLTFREAVLAGWAPDGGMLLPERIPQVTPAMLEEW
RGLSYPQLVTRLLALFVTDDGDEDYGKTEEEVPLEAIVDASFASFATPEV
VTFKALPWPSSSSSSSSSSSSSSSSSSSCSSSPSSAPSLYIAELFHGPSL
AFKDLGMQVLAHLLNFYLFKQHQKMTFLVGTSGDTGPSAAAAVKGKENMR
VIVLYPREGQSLAGSSDAGRA*
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mRNA from alignment at scaffold_7:19148..21336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2827 ID=mRNA_2827|Name=jgi.p|Nanoce1779_2|629133|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp|location=Sequence derived from alignment at scaffold_7:19148..21336- (Nannochloropsis oceanica)
GTTGTATTCTGTTATTCCCGAGAACCCCGCGGGGCCTAGGGACTCACACC
AGGCCTCCAGTTCAAAGCTTTTACAGGCGAAATTAAAATGCTCGATGGAT
GAGCAATATTGCTGCTATAATTCCATTTCGTTAGCTAGTATTCAGGAGTC
CGTAACACTTCACCCCAATGCATTTTGCCATCCCCCCATTCGTGCCACGG
AACACCATGATGGACCTTCAACTCGGCAGTGTTCGTCGTTCGTCTCGCGT
TCTGCGGGGCCAACGCAGGCACATGTACCCACCCCTTTGTACTTACCCGG
CTATTTATCACCTGCCTGGCTCTTTGCTCAATACACCTTACTCTCCTACT
CCCTCCCTCTCCTCCCTTCAGCAATACCACAGGAGTATTGATAGTCACGA
CCCAACGCCCTATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCT
TCGTCGCGCCTCACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGA
CGGAGGCATGCTCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGC
TGGAAGAATGGAGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTG
GCTTTGTTTGTGACGGACGACGGGGACGAGGATTACGGGAAGACCGAAGA
GGAAGTGCCATTGGAAGCGATTGTGGACGCCAGCTTTGCCTCCTTTGCTA
CGCCCGAGGTGGTGACATTCAAGGCCTTGCCGTGGCCTTCGTCGTCGTCG
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTGCTC
CTCCTCCCCCTCCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACG
GGCCCTCCTTGGCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATCTC
CTCAACTTCTACCTCTTCAAGCAACACCAAAAAATGACCTTTCTAGTTGG
CACATCAGGAGACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAG
AGAACATGAGGGTGATAGTATTATACCCTCGGGAGGGTCAGTCCCTTGCA
GGAAGCTCAGATGCTGGCCGCGCATGAGGGAGGGGGAGGGGGAGGGGGAG
GGGGAGGGGGAGGGGGGGAGGAAGAAGGAAGGGAAGAAGAGGGGGGAACG
TGCGGGTGGTGGCAGTGGAGGGGACAAGCGATGATCTGGACGAACCTATC
GCCGAATTGTTTCAGGATAAAGATTATAGGTATGGCCTGTCTGCTTGTCT
TTTCCTCCCTCCCTCCCTCCCTCCCTTCCTCGCTCCTTCCCTCGCTCTCT
ACGCGCTTGACAGCGCGTGCTATTCTCTCCCTCGATCCCTCAATCCCTGC
CTCCCTCCCTTGGCATCTGTTGAAAACAAGTCTACCTACCCACACATGTC
GCTGCTCCACTTAACTAACCCCTCGTTCCCTCCCTCACCTCCCTCCGTCC
TTCTCTCCCTCCCTCCCTTCAGGTCCCACCACTGCCTAGGCAGTCTCAAC
AGTGTCAACATTCGTGCGTCTCCTGGTTCAAATCTTTCACTATTTATGCC
TACCTCCACCTCATTTCCCCCCGAGGAGGGAGGGAGGGAGGGAGGGAGGG
GAGGGAGGGAGGAAGGAAAGTAGGGTCAGTAGTACCTGCTTCCCCCTTGC
CACTCCTCTCGTTTGTTGTGCCTACGGGCGCGGCAGGACATATCACAGCG
GGTTTATTGGCAGCGATGATGGGCCTGCCCGTGCATCGTCTCCTCATGGC
CACGAATCGCAACGGAGTTGTCTTAAGCCGGGTGGTCAGGGAGGGGGTGT
GGGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGTGATCCAGACGAATAGT
CCAGCGATGGACATTCAAAGCGCTTATAACGTGGAGAGAATCTTGAGTCT
CTTGGCAAGGGAGGGAGGGAGGGGAGGGGGGGGGGGGGATGTCCCTCTGA
CAGGCAGGGAGATTGGCAAGTCGATGGAAAGGTTTTACGCAGGGGGGTCG
ACGGCCCTCCCTCCCTCCCTCCTTCGGCACCTCATCGGTTGGGGAGTGGA
GTGTGCTTTACCTGTGAGGGAGGAGGAGGTAGAAGCCACCATTCAAGCAG
TCTATGAGGGAGGGAATAAGGGCGGGAAGGAGGATGGGAGGTATCTCCTG
GACCCACACACGGCCGTGGGTGTGACGGTGGCAGCAGGG
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Coding sequence (CDS) from alignment at scaffold_7:19148..21336-

>mRNA_2827 ID=mRNA_2827|Name=jgi.p|Nanoce1779_2|629133|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_7:19148..21336- (Nannochloropsis oceanica)
ATGCGGTACATTAGCACCCGAGGAGAATCTTCCTCCTCTTCGTCGCGCCT
CACATTTCGTGAAGCCGTGCTAGCAGGATGGGCTCCGGACGGAGGCATGC
TCCTACCAGAGCGCATCCCGCAGGTGACGCCTGCGATGCTGGAAGAATGG
AGAGGCCTCTCATATCCCCAATTAGTCACCAGGCTCTTGGCTTTGTTTGT
GACGGACGACGGGGACGAGGATTACGGGAAGACCGAAGAGGAAGTGCCAT
TGGAAGCGATTGTGGACGCCAGCTTTGCCTCCTTTGCTACGCCCGAGGTG
GTGACATTCAAGGCCTTGCCGTGGCCTTCGTCGTCGTCGTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTGCTCCTCCTCCCCCT
CCTCTGCTCCCTCCCTCTATATCGCCGAATTGTTCCACGGGCCCTCCTTG
GCATTCAAAGACTTAGGCATGCAAGTCTTAGCTCATCTCCTCAACTTCTA
CCTCTTCAAGCAACACCAAAAAATGACCTTTCTAGTTGGCACATCAGGAG
ACACGGGGCCTTCAGCAGCAGCGGCAGTTAAGGGCAAAGAGAACATGAGG
GTGATAGTATTATACCCTCGGGAGGGTCAGTCCCTTGCAGGAAGCTCAGA
TGCTGGCCGCGCATGA
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Synonyms
Publications