jgi.p|Nanoce1779_2|643607, mRNA_10831 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|643607
Unique NamemRNA_10831
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length417
Alignment locationscaffold_72:11786..12564 +

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Properties
Property NameValue
TranscriptId643693
TrackFilteredModels2
ProteinId643607
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:11786..12564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643607gene_10831Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643607mRNA_10831-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10831CDS_10831Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10831 ID=mRNA_10831|Name=jgi.p|Nanoce1779_2|643607|organism=Nannochloropsis oceanica|type=mRNA|length=417bp
ATGTACTATCACTTCTTCTGCATCCTTATTCATATATTCCTACAGGCGAG
GCCGAAGGCCCGGGCACTCTCCCTTAGTCATCCTCCCGCTCCCCCTGCTG
CTGTTGAGGGTGTTGAGGCAGCTAAGAAGGACAGCAGACACCACGGGCAG
CATGAAGTGCCTTCTTCTGAAATCGTGGGGATGGAGGGCTCGCGGGAAGA
AGAGTATCAAATGGAGGTAGTGATGCAAGAAAAGGAAGGGAGGGAAGGAG
AAAGAGCGTGTCATGTGACACCTCCTCATCATAGACGGAATGCGGAGTGG
GCGCGGGCGTTTCAGATGTGCCTGCAAGCGATGGCGGAAGGGAAGGGTTT
TGGAGAGGAGGCGGAGGGGGGAGGGAGGGAAGGAGGGGAAGGGAAAGGTG
CAGAGGAGCGAGGATGA
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protein sequence of jgi.p|Nanoce1779_2|643607

>mRNA_10831-protein ID=mRNA_10831-protein|Name=jgi.p|Nanoce1779_2|643607|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MYYHFFCILIHIFLQARPKARALSLSHPPAPPAAVEGVEAAKKDSRHHGQ
HEVPSSEIVGMEGSREEEYQMEVVMQEKEGREGERACHVTPPHHRRNAEW
ARAFQMCLQAMAEGKGFGEEAEGGGREGGEGKGAEERG*
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mRNA from alignment at scaffold_72:11786..12564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10831 ID=mRNA_10831|Name=jgi.p|Nanoce1779_2|643607|organism=Nannochloropsis oceanica|type=mRNA|length=779bp|location=Sequence derived from alignment at scaffold_72:11786..12564+ (Nannochloropsis oceanica)
ATGTAGTACGCTTGCACAAGGCAGCTCTGGGGCGTCCTTGTCGATTTGTG
TGCGAGTACTCTGCTGCTGACCTTACCCCTCTCTCTCCTCGTTTATGCAT
ATACCCAATAAGTGGTACAGTCTATGTCTCTGCCATTTTACCCTCATCGC
ACCGGCCCGTCCTCCTCTTCCCTCCACCATCATCATAGGGGCTCTGTCCT
GCTCTCCGAGAGTCTATCGCACTTCCTCCCCCTGGTTGAGAGTACACAGA
ATAACTTGGATTCTTCATCATCCACACACTTATAGCTATCACTTCTTCTG
CATCCTTATTCATATATTCCTACAGGCGAGGCCGAAGGCCCGGGCAGTAA
GTCGTTGCTATGTTTCGTCCTCTTCCTCCTCGCGTTCCTCCTCCTTCCTT
TTCCGTCACTTCTACAACATCTACTCAGCTCTCCCTTAGTCATCCTCCCG
CTCCCCCTGCTGCTGTTGAGGGTGTTGAGGCAGCTAAGAAGGACAGCAGA
CACCACGGGCAGCATGAAGTGCCTTCTTCTGAAATCGTGGGGATGGAGGG
CTCGCGGGAAGAAGAGTATCAAATGGAGGTAGTGATGCAAGAAAAGGAAG
GGAGGGAAGGAGAAAGAGCGTGTCATGTGACACCTCCTCATCATAGACGG
AATGCGGAGTGGGCGCGGGCGTTTCAGATGTGCCTGCAAGCGATGGCGGA
AGGGAAGGGTTTTGGAGAGGAGGCGGAGGGGGGAGGGAGGGAAGGAGGGG
AAGGGAAAGGTGCAGAGGAGCGAGGATGA
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Coding sequence (CDS) from alignment at scaffold_72:11786..12564+

>mRNA_10831 ID=mRNA_10831|Name=jgi.p|Nanoce1779_2|643607|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_72:11786..12564+ (Nannochloropsis oceanica)
ATGTACTATCACTTCTTCTGCATCCTTATTCATATATTCCTACAGGCGAG
GCCGAAGGCCCGGGCACTCTCCCTTAGTCATCCTCCCGCTCCCCCTGCTG
CTGTTGAGGGTGTTGAGGCAGCTAAGAAGGACAGCAGACACCACGGGCAG
CATGAAGTGCCTTCTTCTGAAATCGTGGGGATGGAGGGCTCGCGGGAAGA
AGAGTATCAAATGGAGGTAGTGATGCAAGAAAAGGAAGGGAGGGAAGGAG
AAAGAGCGTGTCATGTGACACCTCCTCATCATAGACGGAATGCGGAGTGG
GCGCGGGCGTTTCAGATGTGCCTGCAAGCGATGGCGGAAGGGAAGGGTTT
TGGAGAGGAGGCGGAGGGGGGAGGGAGGGAAGGAGGGGAAGGGAAAGGTG
CAGAGGAGCGAGGATGAATGTACTATCACTTCTTCTGCATCCTTATTCAT
ATATTCCTACAGGCGAGGCCGAAGGCCCGGGCACTCTCCCTTAGTCATCC
TCCCGCTCCCCCTGCTGCTGTTGAGGGTGTTGAGGCAGCTAAGAAGGACA
GCAGACACCACGGGCAGCATGAAGTGCCTTCTTCTGAAATCGTGGGGATG
GAGGGCTCGCGGGAAGAAGAGTATCAAATGGAGGTAGTGATGCAAGAAAA
GGAAGGGAGGGAAGGAGAAAGAGCGTGTCATGTGACACCTCCTCATCATA
GACGGAATGCGGAGTGGGCGCGGGCGTTTCAGATGTGCCTGCAAGCGATG
GCGGAAGGGAAGGGTTTTGGAGAGGAGGCGGAGGGGGGAGGGAGGGAAGG
AGGGGAAGGGAAAGGTGCAGAGGAGCGAGGATGAATGTACTATCACTTCT
TCTGCATCCTTATTCATATATTCCTACAGGCGAGGCCGAAGGCCCGGGCA
CTCTCCCTTAGTCATCCTCCCGCTCCCCCTGCTGCTGTTGAGGGTGTTGA
GGCAGCTAAGAAGGACAGCAGACACCACGGGCAGCATGAAGTGCCTTCTT
CTGAAATCGTGGGGATGGAGGGCTCGCGGGAAGAAGAGTATCAAATGGAG
GTAGTGATGCAAGAAAAGGAAGGGAGGGAAGGAGAAAGAGCGTGTCATGT
GACACCTCCTCATCATAGACGGAATGCGGAGTGGGCGCGGGCGTTTCAGA
TGTGCCTGCAAGCGATGGCGGAAGGGAAGGGTTTTGGAGAGGAGGCGGAG
GGGGGAGGGAGGGAAGGAGGGGAAGGGAAAGGTGCAGAGGAGCGAGGATG
A
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Synonyms
Publications