jgi.p|Nanoce1779_2|449010, mRNA_11647 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|449010
Unique NamemRNA_11647
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length825
Alignment locationscaffold_91:43253..44077 +

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Properties
Property NameValue
TranscriptId449096
TrackFilteredModels2
ProteinId449010
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:43253..44077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|449010gene_11647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|449010mRNA_11647-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11647CDS_11647Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11647 ID=mRNA_11647|Name=jgi.p|Nanoce1779_2|449010|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
ATTCACGCAAGTAAAGAAAGAAAGACCATGAACAAGGTGTGTGTGTGTGA
GGAATAGAGGCTTAATAGTGACTGCAAAGAAGACAAGCCATAAACGACGG
TTGACGCTCGGTACCATGAAAGGAAATTCAAGCGCTCATCATTTCCTCAC
TCTCGGTGTTCCTTCCTCTCACCCACTCTCCCACCCTTCTTCTTCAGGTG
TGCAATCTTTCAGGCAAGACGAGGGGAGGAAAGTAGAAGGGATGACACAG
GAACAAGTCTTGCTGCGGCAGGCGGTTGCGTGGCAAGAAAAAACACAAGG
AATAGCGAACAGAGGGGGGAGAGTGAAGAAGAGGGGGAGATTCTTGGTAA
ATGGGAATGAGGAGAAGGAAGAGGAGATCGAATGGGTTGGAAATCGAGAA
GCCGGGAATAAGCGAAGGAGTAGGGAGGATTGGGTGAGGGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGTGGAG
GAGGAGGAGGTTATGTTTGGGAAAGGGGAAGAGGAGCATTGGGAGGAGGA
GTAGGAGTAGAAAGGTGGAAGAAGCAAGAGCAAGGCAGAGTAGGACGGCC
AGGAGGACAACGGCAAGGTCGAGGACGAGGACGAGGACGAGGAGGACAAA
ATTCACTGTGTGACGAGAGAGGAAAGAAAGCCTTTCCAATTACCATGGCA
CTGGAGTCGAAGCTAGGAATGTCCTTGGATGAGCTTGTAAAGAAGGGTGA
GGGAAAGTAAGCGGGGAGAAAGAGTACAATAGAGCGGAATAGGAGAGCCC
CTCGATATGTGTGCATTATGAGGTG
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protein sequence of jgi.p|Nanoce1779_2|449010

>mRNA_11647-protein ID=mRNA_11647-protein|Name=jgi.p|Nanoce1779_2|449010|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MKGNSSAHHFLTLGVPSSHPLSHPSSSGVQSFRQDEGRKVEGMTQEQVLL
RQAVAWQEKTQGIANRGGRVKKRGRFLVNGNEEKEEEIEWVGNREAGNKR
RSREDWVRGGGGGGGGGGGGGGGGEEGGGGGGYVWERGRGALGGGVGVER
WKKQEQGRVGRPGGQRQGRGRGRGRGGQNSLCDERGKKAFPITMALESKL
GMSLDELVKKGEGK*
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mRNA from alignment at scaffold_91:43253..44077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11647 ID=mRNA_11647|Name=jgi.p|Nanoce1779_2|449010|organism=Nannochloropsis oceanica|type=mRNA|length=825bp|location=Sequence derived from alignment at scaffold_91:43253..44077+ (Nannochloropsis oceanica)
ATTCACGCAAGTAAAGAAAGAAAGACCATGAACAAGGTGTGTGTGTGTGA
GGAATAGAGGCTTAATAGTGACTGCAAAGAAGACAAGCCATAAACGACGG
TTGACGCTCGGTACCATGAAAGGAAATTCAAGCGCTCATCATTTCCTCAC
TCTCGGTGTTCCTTCCTCTCACCCACTCTCCCACCCTTCTTCTTCAGGTG
TGCAATCTTTCAGGCAAGACGAGGGGAGGAAAGTAGAAGGGATGACACAG
GAACAAGTCTTGCTGCGGCAGGCGGTTGCGTGGCAAGAAAAAACACAAGG
AATAGCGAACAGAGGGGGGAGAGTGAAGAAGAGGGGGAGATTCTTGGTAA
ATGGGAATGAGGAGAAGGAAGAGGAGATCGAATGGGTTGGAAATCGAGAA
GCCGGGAATAAGCGAAGGAGTAGGGAGGATTGGGTGAGGGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGTGGAG
GAGGAGGAGGTTATGTTTGGGAAAGGGGAAGAGGAGCATTGGGAGGAGGA
GTAGGAGTAGAAAGGTGGAAGAAGCAAGAGCAAGGCAGAGTAGGACGGCC
AGGAGGACAACGGCAAGGTCGAGGACGAGGACGAGGACGAGGAGGACAAA
ATTCACTGTGTGACGAGAGAGGAAAGAAAGCCTTTCCAATTACCATGGCA
CTGGAGTCGAAGCTAGGAATGTCCTTGGATGAGCTTGTAAAGAAGGGTGA
GGGAAAGTAAGCGGGGAGAAAGAGTACAATAGAGCGGAATAGGAGAGCCC
CTCGATATGTGTGCATTATGAGGTG
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Coding sequence (CDS) from alignment at scaffold_91:43253..44077+

>mRNA_11647 ID=mRNA_11647|Name=jgi.p|Nanoce1779_2|449010|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_91:43253..44077+ (Nannochloropsis oceanica)
ATGAAAGGAAATTCAAGCGCTCATCATTTCCTCACTCTCGGTGTTCCTTC
CTCTCACCCACTCTCCCACCCTTCTTCTTCAGGTGTGCAATCTTTCAGGC
AAGACGAGGGGAGGAAAGTAGAAGGGATGACACAGGAACAAGTCTTGCTG
CGGCAGGCGGTTGCGTGGCAAGAAAAAACACAAGGAATAGCGAACAGAGG
GGGGAGAGTGAAGAAGAGGGGGAGATTCTTGGTAAATGGGAATGAGGAGA
AGGAAGAGGAGATCGAATGGGTTGGAAATCGAGAAGCCGGGAATAAGCGA
AGGAGTAGGGAGGATTGGGTGAGGGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGAAGAAGGTGGAGGAGGAGGAGGTTATG
TTTGGGAAAGGGGAAGAGGAGCATTGGGAGGAGGAGTAGGAGTAGAAAGG
TGGAAGAAGCAAGAGCAAGGCAGAGTAGGACGGCCAGGAGGACAACGGCA
AGGTCGAGGACGAGGACGAGGACGAGGAGGACAAAATTCACTGTGTGACG
AGAGAGGAAAGAAAGCCTTTCCAATTACCATGGCACTGGAGTCGAAGCTA
GGAATGTCCTTGGATGAGCTTGTAAAGAAGGGTGAGGGAAAGTAA
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Synonyms
Publications