jgi.p|Nanoce1779_2|556496, mRNA_5412 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556496
Unique NamemRNA_5412
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1210
Alignment locationscaffold_13:375562..377172 +

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Properties
Property NameValue
TranscriptId556582
TrackFilteredModels2
ProteinId556496
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:375562..377172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556496gene_5412Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556496mRNA_5412-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5412CDS_5412Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5412 ID=mRNA_5412|Name=jgi.p|Nanoce1779_2|556496|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
CAGGGCAGGACCAGTACGCCCTATCTGAACAGCCAAAGCAACGACGCCCT
GGGTCCGCAGGGCTTTCCGTGAGCGAACAGTGGCATAAAAACGGGCAAGC
TGAGAGAGGAGACTTGAGCAGTGCCGTACCTCTTGGGGTCATCCACCACT
CTCGAGCAGGGGGCGGAGCCACTGTGCTAGGGCGACAAGCATGCCGGGCA
TCCCTGACCCTCAAACGGCCTTTGCCATCTCAGGGCAAGCCATCCTCCTA
ACCTTGTCTGCTGGTACCACAATCTTCCTCCTCGTAATCCTCGGATTCAG
CACCATCCACCGGTTCAATCTCTTTCCCCGCACCTACGCTCCAAGATGGT
ATCTTCATCCTAACCGAACCCCCATGGTAATGGAACGTCACCCCCGAAGG
CTTTTCTCCTGGGTCAAAGACATCTATACCATCCCCGAGGACGAAATCCT
CCGCACCGTGGGCCTAGACGCCCTCGTTTTTCTTCGAACCCAGCGGCTCT
ACGCCATTCTCTTCCTCCTCTGTTCCGTTTTCGGCCTCGGGGTCTTATTA
CCCCTCAACATAAAATATGGCAACCCCGCAACAAACGACTCCCAATTCGC
CCTCACCACCATGGCCAACCTCCCCCCGCGGAACCGCATTGGGAACACGC
ATGTCTATCGCACCAACATTGCTGCCACTTGGCTATTTACCGCATTCACC
GTTGGATTGCTCTGGCTCGAATACCGCTCCTACATCGCCCTCCGTTTCAA
ATGGCTCACCCTGCCACGGACGCACAATTACTCTGTTATGGTCACCCACA
TCCCGCCTAAAATGCGCAATGTCGCCGTGCTCAAAGCATTCTTCGACCGA
CTCCTCGCTCCACACGGCCCGCAACTCGGTGAATCCATCGGCAAGGTCCT
GAGCGTGACGCTTACGATGAGCCTCGCTCGTCTTGAAGCTCTAGTCACAG
AGCGGGCGACCGTACACCGCAAGCTCGAGCACACCATGGCCCTCTATGCC
CAACCCGACTCCCGCTTGTGGCGTTGCCTTCACCGGTGCTTCAACCGCAC
AGGGCAACAGTGGCGACAAGACCTTCTCCATGACATTCGCCTCCTCTCTG
AGCGCCTCCAAACCCTGAACGAAGTAGTCGAATGCGCCCAACAGGAAGTC
CGACGGCTCTATTACGGTTACAACGATCCCTCAAACTTCGGCCTCCTTGA
TATTGAAATC
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protein sequence of jgi.p|Nanoce1779_2|556496

>mRNA_5412-protein ID=mRNA_5412-protein|Name=jgi.p|Nanoce1779_2|556496|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MPGIPDPQTAFAISGQAILLTLSAGTTIFLLVILGFSTIHRFNLFPRTYA
PRWYLHPNRTPMVMERHPRRLFSWVKDIYTIPEDEILRTVGLDALVFLRT
QRLYAILFLLCSVFGLGVLLPLNIKYGNPATNDSQFALTTMANLPPRNRI
GNTHVYRTNIAATWLFTAFTVGLLWLEYRSYIALRFKWLTLPRTHNYSVM
VTHIPPKMRNVAVLKAFFDRLLAPHGPQLGESIGKVLSVTLTMSLARLEA
LVTERATVHRKLEHTMALYAQPDSRLWRCLHRCFNRTGQQWRQDLLHDIR
LLSERLQTLNEVVECAQQEVRRLYYGYNDPSNFGLLDIEI
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mRNA from alignment at scaffold_13:375562..377172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5412 ID=mRNA_5412|Name=jgi.p|Nanoce1779_2|556496|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp|location=Sequence derived from alignment at scaffold_13:375562..377172+ (Nannochloropsis oceanica)
CAGGGCAGGACCAGTACGCCCTATCTGAACAGCCAAAGCAACGACGCCCT
GGGTCCGCAGGGCTTTCCGTGAGCGAACAGTGGCATAAAAACGGGCAAGC
TGAGAGAGGAGACTTGAGCAGTGCCGTACCTCTTGGGGTCATCCACCACT
CTCGAGGTGCGTACATAAAGGCAGCAAGGCATATGGCAATGAGGCTTCTG
ACATTCGTTTTCTTCAATTAGCAGCAGGGGGCGGAGCCACTGTGCTAGGG
CGACAAGCATGCCGGGCATCCCTGACCCTCAAACGGCCTTTGCCATCTCA
GGTACGTGTTGCGGGTACTGTGTTGCATATTTACTTGGTGGCAGCGTATG
GGAGAAGGTGTGCTTGTCGATATGCACATAAATGGTTTCTCATTGTGTCG
CCAGCATTTCATTGGGGCTGCCTCATCGATGCCCTGCTCAAAGAGGCAAC
GCCAGAGAAGACTACAGGCCGTCTTTCCCTCTTTGATGAGTGCCGAAGTG
TCATCATATGACATGCTGCTCGCAGCAGCTACTGCGATATCGCCTTCTTT
GCGACAAACCTCTTGCCCCTAACTCCTAGTATGATTTCATGTCCCCCTCT
CTCTCCCTTAATCCCCACACATCCCACTTACCAGGGCAAGCCATCCTCCT
AACCTTGTCTGCTGGTACCACAATCTTCCTCCTCGTAATCCTCGGATTCA
GCACCATCCACCGGTTCAATCTCTTTCCCCGCACCTACGCTCCAAGATGG
TATCTTCATCCTAACCGAACCCCCATGGTAATGGAACGTCACCCCCGAAG
GCTTTTCTCCTGGGTCAAAGACATCTATACCATCCCCGAGGACGAAATCC
TCCGCACCGTGGGCCTAGACGCCCTCGTTTTTCTTCGAACCCAGCGGCTC
TACGCCATTCTCTTCCTCCTCTGTTCCGTTTTCGGCCTCGGGGTCTTATT
ACCCCTCAACATAAAATATGGCAACCCCGCAACAAACGACTCCCAATTCG
CCCTCACCACCATGGCCAACCTCCCCCCGCGGAACCGCATTGGGAACACG
CATGTCTATCGCACCAACATTGCTGCCACTTGGCTATTTACCGCATTCAC
CGTTGGATTGCTCTGGCTCGAATACCGCTCCTACATCGCCCTCCGTTTCA
AATGGCTCACCCTGCCACGGACGCACAATTACTCTGTTATGGTCACCCAC
ATCCCGCCTAAAATGCGCAATGTCGCCGTGCTCAAAGCATTCTTCGACCG
ACTCCTCGCTCCACACGGCCCGCAACTCGGTGAATCCATCGGCAAGGTCC
TGAGCGTGACGCTTACGATGAGCCTCGCTCGTCTTGAAGCTCTAGTCACA
GAGCGGGCGACCGTACACCGCAAGCTCGAGCACACCATGGCCCTCTATGC
CCAACCCGACTCCCGCTTGTGGCGTTGCCTTCACCGGTGCTTCAACCGCA
CAGGGCAACAGTGGCGACAAGACCTTCTCCATGACATTCGCCTCCTCTCT
GAGCGCCTCCAAACCCTGAACGAAGTAGTCGAATGCGCCCAACAGGAAGT
CCGACGGCTCTATTACGGTTACAACGATCCCTCAAACTTCGGCCTCCTTG
ATATTGAAATC
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Coding sequence (CDS) from alignment at scaffold_13:375562..377172+

>mRNA_5412 ID=mRNA_5412|Name=jgi.p|Nanoce1779_2|556496|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_13:375562..377172+ (Nannochloropsis oceanica)
ATGCCGGGCATCCCTGACCCTCAAACGGCCTTTGCCATCTCAGGGCAAGC
CATCCTCCTAACCTTGTCTGCTGGTACCACAATCTTCCTCCTCGTAATCC
TCGGATTCAGCACCATCCACCGGTTCAATCTCTTTCCCCGCACCTACGCT
CCAAGATGGTATCTTCATCCTAACCGAACCCCCATGGTAATGGAACGTCA
CCCCCGAAGGCTTTTCTCCTGGGTCAAAGACATCTATACCATCCCCGAGG
ACGAAATCCTCCGCACCGTGGGCCTAGACGCCCTCGTTTTTCTTCGAACC
CAGCGGCTCTACGCCATTCTCTTCCTCCTCTGTTCCGTTTTCGGCCTCGG
GGTCTTATTACCCCTCAACATAAAATATGGCAACCCCGCAACAAACGACT
CCCAATTCGCCCTCACCACCATGGCCAACCTCCCCCCGCGGAACCGCATT
GGGAACACGCATGTCTATCGCACCAACATTGCTGCCACTTGGCTATTTAC
CGCATTCACCGTTGGATTGCTCTGGCTCGAATACCGCTCCTACATCGCCC
TCCGTTTCAAATGGCTCACCCTGCCACGGACGCACAATTACTCTGTTATG
GTCACCCACATCCCGCCTAAAATGCGCAATGTCGCCGTGCTCAAAGCATT
CTTCGACCGACTCCTCGCTCCACACGGCCCGCAACTCGGTGAATCCATCG
GCAAGGTCCTGAGCGTGACGCTTACGATGAGCCTCGCTCGTCTTGAAGCT
CTAGTCACAGAGCGGGCGACCGTACACCGCAAGCTCGAGCACACCATGGC
CCTCTATGCCCAACCCGACTCCCGCTTGTGGCGTTGCCTTCACCGGTGCT
TCAACCGCACAGGGCAACAGTGGCGACAAGACCTTCTCCATGACATTCGC
CTCCTCTCTGAGCGCCTCCAAACCCTGAACGAAGTAGTCGAATGCGCCCA
ACAGGAAGTCCGACGGCTCTATTACGGTTACAACGATCCCTCAAACTTCG
GCCTCCTTGATATTGAAATCATGCCGGGCATCCCTGACCCTCAAACGGCC
TTTGCCATCTCAGGGCAAGCCATCCTCCTAACCTTGTCTGCTGGTACCAC
AATCTTCCTCCTCGTAATCCTCGGATTCAGCACCATCCACCGGTTCAATC
TCTTTCCCCGCACCTACGCTCCAAGATGGTATCTTCATCCTAACCGAACC
CCCATGGTAATGGAACGTCACCCCCGAAGGCTTTTCTCCTGGGTCAAAGA
CATCTATACCATCCCCGAGGACGAAATCCTCCGCACCGTGGGCCTAGACG
CCCTCGTTTTTCTTCGAACCCAGCGGCTCTACGCCATTCTCTTCCTCCTC
TGTTCCGTTTTCGGCCTCGGGGTCTTATTACCCCTCAACATAAAATATGG
CAACCCCGCAACAAACGACTCCCAATTCGCCCTCACCACCATGGCCAACC
TCCCCCCGCGGAACCGCATTGGGAACACGCATGTCTATCGCACCAACATT
GCTGCCACTTGGCTATTTACCGCATTCACCGTTGGATTGCTCTGGCTCGA
ATACCGCTCCTACATCGCCCTCCGTTTCAAATGGCTCACCCTGCCACGGA
CGCACAATTACTCTGTTATGGTCACCCACATCCCGCCTAAAATGCGCAAT
GTCGCCGTGCTCAAAGCATTCTTCGACCGACTCCTCGCTCCACACGGCCC
GCAACTCGGTGAATCCATCGGCAAGGTCCTGAGCGTGACGCTTACGATGA
GCCTCGCTCGTCTTGAAGCTCTAGTCACAGAGCGGGCGACCGTACACCGC
AAGCTCGAGCACACCATGGCCCTCTATGCCCAACCCGACTCCCGCTTGTG
GCGTTGCCTTCACCGGTGCTTCAACCGCACAGGGCAACAGTGGCGACAAG
ACCTTCTCCATGACATTCGCCTCCTCTCTGAGCGCCTCCAAACCCTGAAC
GAAGTAGTCGAATGCGCCCAACAGGAAGTCCGACGGCTCTATTACGGTTA
CAACGATCCCTCAAACTTCGGCCTCCTTGATATTGAAATC
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Synonyms
Publications