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Properties
| Property Name | Value |
|---|
| TranscriptId | 611067 |
| Track | FilteredModels2 |
| ProteinId | 610981 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_53 | supercontig | scaffold_53:85153..86715 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10562 ID=mRNA_10562|Name=jgi.p|Nanoce1779_2|610981|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
AGACAGCTTTCACAGTGCATCTAGCATGGCCGCAGCACATGCGAGCGGTC
CCGGAGACGGCCAGACTCGGAGGAGGCGTGTAGGCCTCGCAGCCTTAGCC
GTCGTGCTCGTTGCGGGCCTGGTGGCCACTATAGCCATCGTTTCGGGGGG
CAAGGACCAAAACAAGTCAGCCGGGAGGTCCGGAGCACAGACGACACCGA
TGGGTGACACAACTGTCCCTTTCTCTTTGATGTTTGACACTGCGACGACA
ACGAGTGAAGCGCCGGCCGACATCAAGGTGCCAGAAACGTCCATGACGAC
TACGCAGCAGGCGAGCGACTCCACACTGCCGACAGGTACTGCGGCAGGTC
CTGGGTTGACTTTCGTCACGAATAAGGCCGGAGAGGCAGCTTACAAAGTA
TCGGACGAGGCCGCCGAGGCCAAAACCTCCGGCACTCCGCCTGATTTTTT
GGTAGATGTCCAGATGGGGTTGGCAGTGGCGGGCGGTGGCTTGGAAGGCT
TGCCCGAGGATTCCTGTTTCGCCGCCGACTTTGACGAGCTCAAGGACGCC
GTTGAGAACAAAGCATGCAGCATTGTTTACCTTGCCCCCGGTAAGATCTT
CGAGATTGAGGAGGAGATCTTTGTCCGACGCCGCGTGGTGGTTATGGGAA
ACCCCAGCATTCTGCCCGTTCTTGACGGTGAAGAGTCTGTGCGCACGTGG
CATGTCACCGCTGGTGGCTTCCTGGACCTGCGATTCGTGCAACAGCTGAT
GAGCGATGGTATTTTTCGGGATCCCTTGCCTTTTGAGCGCTTCGCGAACA
CTGCACCCACGGGCAAGGTGAACGAGATTCGGGGTGGCAGTGTCATGATT
GATTCGGATGCCTTGGGCGCAAAATTTACGGGTGTTCTCTTTATCGATGA
CCCAGATCTTGAGTCGGGCATTGAGCGCAATATTCGGCGTACCCTGGGTC
GTGAGGTCTACCGCATCTATGGCGGTCACGTCTTCGCGGTGGGCGGACAG
ATTGGTATGTGAAGAGGAAAGAGGCTCCCATGTGTGTGACGCACGATGGA
AAGACTGTGTGAATGGATCCATACTTTATATCATGTCTTTTTAAGGCCCG
TGTGAGCATACTGTCAAAACCTTCTTGTCTCTTAACCGCCCGCTTAAATA
TCCCTCCATACCAGACTTCATCGGCTGCATGTTCTTTGACTTGACCGTG back to topprotein sequence of jgi.p|Nanoce1779_2|610981 >mRNA_10562-protein ID=mRNA_10562-protein|Name=jgi.p|Nanoce1779_2|610981|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MAAAHASGPGDGQTRRRRVGLAALAVVLVAGLVATIAIVSGGKDQNKSAG
RSGAQTTPMGDTTVPFSLMFDTATTTSEAPADIKVPETSMTTTQQASDST
LPTGTAAGPGLTFVTNKAGEAAYKVSDEAAEAKTSGTPPDFLVDVQMGLA
VAGGGLEGLPEDSCFAADFDELKDAVENKACSIVYLAPGKIFEIEEEIFV
RRRVVVMGNPSILPVLDGEESVRTWHVTAGGFLDLRFVQQLMSDGIFRDP
LPFERFANTAPTGKVNEIRGGSVMIDSDALGAKFTGVLFIDDPDLESGIE
RNIRRTLGREVYRIYGGHVFAVGGQIGM* back to topmRNA from alignment at scaffold_53:85153..86715- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10562 ID=mRNA_10562|Name=jgi.p|Nanoce1779_2|610981|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at scaffold_53:85153..86715- (Nannochloropsis oceanica)
AGACAGCTTTCACAGTGCATCTAGCATGGCCGCAGCACATGCGAGCGGTC
CCGGAGACGGCCAGACTCGGAGGAGGCGTGTAGGCCTCGCAGCCTTAGCC
GTCGTGCTCGTTGCGGGCCTGGTGGCCACTATAGCCATCGTTTCGGGGGG
CAAGGTAAGCAAGCAGAAAGGAGCTGAGGATACGTGGGTACGTATAAGCC
ACATGTTGCATGCCCGCCTCATCTCCTCGCCTTTACACCCACACGCACAC
ACGCACACAGGACCAAAACAAGTCAGCCGGGAGGTCCGGAGCACAGACGA
CACCGATGGGTGACACAACTGTCCCTTTCTCTTTGATGTTTGACACTGCG
ACGACAACGAGTGAAGCGCCGGTACGTGTCGGAGAAAGAAACCGAGCTGC
AAAGGTTTTTGCAACTGACCACGATCTCTTTATAAAAACTAACACAGGCC
GACATCAAGGTGCCAGAAACGTCCATGACGACTACGCAGCAGGTACGTTC
CAAGAATCAATGTTCATATTCCAGTATCTAGGATGCATGTCTTGCTGGCG
TTTTTTTCGCTGAAACATCACACCACACGCACAGGCGAGCGACTCCACAC
TGCCGACAGGTACTGCGGCAGGTCCTGGGTTGACTTTCGTCACGAATAAG
GCCGGAGAGGCAGCTTACAAAGTATCGGACGAGGCCGCCGAGGCCAAAAC
CTCCGGCACTCCGCCTGATTTTTTGGTAGATGTCCAGATGGGGTTGGCAG
TGGCGGGCGGTGGCTTGGAAGGCTTGCCCGAGGATTCCTGTTTCGCCGCC
GACTTTGACGAGCTCAAGGACGCCGTTGAGGTATGATTTGTTCTGGGGGG
TTGTCCAATTCTATCTCGTTCATCGACCTTTTTCTTTTCCTCGATCCTTT
CAATCATTCTCGACTCGTAGAACAAAGCATGCAGCATTGTTTACCTTGCC
CCCGGTAAGATCTTCGAGATTGAGGAGGAGATCTTTGTCCGACGCCGCGT
GGTGGTTATGGGAAACCCCAGCATTCTGCCCGTTCTTGACGGTGAAGAGT
CTGTGCGCACGTGGCATGTCACCGCTGGTGGCTTCCTGGACCTGCGATTC
GTGCAACAGCTGATGAGCGATGGTATTTTTCGGGATCCCTTGCCTTTTGA
GCGCTTCGCGAACACTGCACCCACGGGCAAGGTGAACGAGATTCGGGGTG
GCAGTGTCATGATTGATTCGGATGCCTTGGGCGCAAAATTTACGGGTGTT
CTCTTTATCGATGACCCAGATCTTGAGTCGGGCATTGAGCGCAATATTCG
GCGTACCCTGGGTCGTGAGGTCTACCGCATCTATGGCGGTCACGTCTTCG
CGGTGGGCGGACAGATTGGTATGTGAAGAGGAAAGAGGCTCCCATGTGTG
TGACGCACGATGGAAAGACTGTGTGAATGGATCCATACTTTATATCATGT
CTTTTTAAGGCCCGTGTGAGCATACTGTCAAAACCTTCTTGTCTCTTAAC
CGCCCGCTTAAATATCCCTCCATACCAGACTTCATCGGCTGCATGTTCTT
TGACTTGACCGTG back to topCoding sequence (CDS) from alignment at scaffold_53:85153..86715- >mRNA_10562 ID=mRNA_10562|Name=jgi.p|Nanoce1779_2|610981|organism=Nannochloropsis oceanica|type=CDS|length=4935bp|location=Sequence derived from alignment at scaffold_53:85153..86715- (Nannochloropsis oceanica)
AACAAAGCATGCAGCATTGTTTACCTTGCCCCCGGTAAGATCTTCGAGAT
TGAGGAGGAGATCTTTGTCCGACGCCGCGTGGTGGTTATGGGAAACCCCA
GCATTCTGCCCGTTCTTGACGGTGAAGAGTCTGTGCGCACGTGGCATGTC
ACCGCTGGTGGCTTCCTGGACCTGCGATTCGTGCAACAGCTGATGAGCGA
TGGTATTTTTCGGGATCCCTTGCCTTTTGAGCGCTTCGCGAACACTGCAC
CCACGGGCAAGGTGAACGAGATTCGGGGTGGCAGTGTCATGATTGATTCG
GATGCCTTGGGCGCAAAATTTACGGGTGTTCTCTTTATCGATGACCCAGA
TCTTGAGTCGGGCATTGAGCGCAATATTCGGCGTACCCTGGGTCGTGAGG
TCTACCGCATCTATGGCGGTCACGTCTTCGCGGTGGGCGGACAGATTGGT
ATGTGAGCGAGCGACTCCACACTGCCGACAGGTACTGCGGCAGGTCCTGG
GTTGACTTTCGTCACGAATAAGGCCGGAGAGGCAGCTTACAAAGTATCGG
ACGAGGCCGCCGAGGCCAAAACCTCCGGCACTCCGCCTGATTTTTTGGTA
GATGTCCAGATGGGGTTGGCAGTGGCGGGCGGTGGCTTGGAAGGCTTGCC
CGAGGATTCCTGTTTCGCCGCCGACTTTGACGAGCTCAAGGACGCCGTTG
AGGCCGACATCAAGGTGCCAGAAACGTCCATGACGACTACGCAGCAGGAC
CAAAACAAGTCAGCCGGGAGGTCCGGAGCACAGACGACACCGATGGGTGA
CACAACTGTCCCTTTCTCTTTGATGTTTGACACTGCGACGACAACGAGTG
AAGCGCCGATGGCCGCAGCACATGCGAGCGGTCCCGGAGACGGCCAGACT
CGGAGGAGGCGTGTAGGCCTCGCAGCCTTAGCCGTCGTGCTCGTTGCGGG
CCTGGTGGCCACTATAGCCATCGTTTCGGGGGGCAAGAACAAAGCATGCA
GCATTGTTTACCTTGCCCCCGGTAAGATCTTCGAGATTGAGGAGGAGATC
TTTGTCCGACGCCGCGTGGTGGTTATGGGAAACCCCAGCATTCTGCCCGT
TCTTGACGGTGAAGAGTCTGTGCGCACGTGGCATGTCACCGCTGGTGGCT
TCCTGGACCTGCGATTCGTGCAACAGCTGATGAGCGATGGTATTTTTCGG
GATCCCTTGCCTTTTGAGCGCTTCGCGAACACTGCACCCACGGGCAAGGT
GAACGAGATTCGGGGTGGCAGTGTCATGATTGATTCGGATGCCTTGGGCG
CAAAATTTACGGGTGTTCTCTTTATCGATGACCCAGATCTTGAGTCGGGC
ATTGAGCGCAATATTCGGCGTACCCTGGGTCGTGAGGTCTACCGCATCTA
TGGCGGTCACGTCTTCGCGGTGGGCGGACAGATTGGTATGTGAGCGAGCG
ACTCCACACTGCCGACAGGTACTGCGGCAGGTCCTGGGTTGACTTTCGTC
ACGAATAAGGCCGGAGAGGCAGCTTACAAAGTATCGGACGAGGCCGCCGA
GGCCAAAACCTCCGGCACTCCGCCTGATTTTTTGGTAGATGTCCAGATGG
GGTTGGCAGTGGCGGGCGGTGGCTTGGAAGGCTTGCCCGAGGATTCCTGT
TTCGCCGCCGACTTTGACGAGCTCAAGGACGCCGTTGAGGCCGACATCAA
GGTGCCAGAAACGTCCATGACGACTACGCAGCAGGACCAAAACAAGTCAG
CCGGGAGGTCCGGAGCACAGACGACACCGATGGGTGACACAACTGTCCCT
TTCTCTTTGATGTTTGACACTGCGACGACAACGAGTGAAGCGCCGATGGC
CGCAGCACATGCGAGCGGTCCCGGAGACGGCCAGACTCGGAGGAGGCGTG
TAGGCCTCGCAGCCTTAGCCGTCGTGCTCGTTGCGGGCCTGGTGGCCACT
ATAGCCATCGTTTCGGGGGGCAAGAACAAAGCATGCAGCATTGTTTACCT
TGCCCCCGGTAAGATCTTCGAGATTGAGGAGGAGATCTTTGTCCGACGCC
GCGTGGTGGTTATGGGAAACCCCAGCATTCTGCCCGTTCTTGACGGTGAA
GAGTCTGTGCGCACGTGGCATGTCACCGCTGGTGGCTTCCTGGACCTGCG
ATTCGTGCAACAGCTGATGAGCGATGGTATTTTTCGGGATCCCTTGCCTT
TTGAGCGCTTCGCGAACACTGCACCCACGGGCAAGGTGAACGAGATTCGG
GGTGGCAGTGTCATGATTGATTCGGATGCCTTGGGCGCAAAATTTACGGG
TGTTCTCTTTATCGATGACCCAGATCTTGAGTCGGGCATTGAGCGCAATA
TTCGGCGTACCCTGGGTCGTGAGGTCTACCGCATCTATGGCGGTCACGTC
TTCGCGGTGGGCGGACAGATTGGTATGTGAGCGAGCGACTCCACACTGCC
GACAGGTACTGCGGCAGGTCCTGGGTTGACTTTCGTCACGAATAAGGCCG
GAGAGGCAGCTTACAAAGTATCGGACGAGGCCGCCGAGGCCAAAACCTCC
GGCACTCCGCCTGATTTTTTGGTAGATGTCCAGATGGGGTTGGCAGTGGC
GGGCGGTGGCTTGGAAGGCTTGCCCGAGGATTCCTGTTTCGCCGCCGACT
TTGACGAGCTCAAGGACGCCGTTGAGGCCGACATCAAGGTGCCAGAAACG
TCCATGACGACTACGCAGCAGGACCAAAACAAGTCAGCCGGGAGGTCCGG
AGCACAGACGACACCGATGGGTGACACAACTGTCCCTTTCTCTTTGATGT
TTGACACTGCGACGACAACGAGTGAAGCGCCGATGGCCGCAGCACATGCG
AGCGGTCCCGGAGACGGCCAGACTCGGAGGAGGCGTGTAGGCCTCGCAGC
CTTAGCCGTCGTGCTCGTTGCGGGCCTGGTGGCCACTATAGCCATCGTTT
CGGGGGGCAAGAACAAAGCATGCAGCATTGTTTACCTTGCCCCCGGTAAG
ATCTTCGAGATTGAGGAGGAGATCTTTGTCCGACGCCGCGTGGTGGTTAT
GGGAAACCCCAGCATTCTGCCCGTTCTTGACGGTGAAGAGTCTGTGCGCA
CGTGGCATGTCACCGCTGGTGGCTTCCTGGACCTGCGATTCGTGCAACAG
CTGATGAGCGATGGTATTTTTCGGGATCCCTTGCCTTTTGAGCGCTTCGC
GAACACTGCACCCACGGGCAAGGTGAACGAGATTCGGGGTGGCAGTGTCA
TGATTGATTCGGATGCCTTGGGCGCAAAATTTACGGGTGTTCTCTTTATC
GATGACCCAGATCTTGAGTCGGGCATTGAGCGCAATATTCGGCGTACCCT
GGGTCGTGAGGTCTACCGCATCTATGGCGGTCACGTCTTCGCGGTGGGCG
GACAGATTGGTATGTGAGCGAGCGACTCCACACTGCCGACAGGTACTGCG
GCAGGTCCTGGGTTGACTTTCGTCACGAATAAGGCCGGAGAGGCAGCTTA
CAAAGTATCGGACGAGGCCGCCGAGGCCAAAACCTCCGGCACTCCGCCTG
ATTTTTTGGTAGATGTCCAGATGGGGTTGGCAGTGGCGGGCGGTGGCTTG
GAAGGCTTGCCCGAGGATTCCTGTTTCGCCGCCGACTTTGACGAGCTCAA
GGACGCCGTTGAGGCCGACATCAAGGTGCCAGAAACGTCCATGACGACTA
CGCAGCAGGACCAAAACAAGTCAGCCGGGAGGTCCGGAGCACAGACGACA
CCGATGGGTGACACAACTGTCCCTTTCTCTTTGATGTTTGACACTGCGAC
GACAACGAGTGAAGCGCCGATGGCCGCAGCACATGCGAGCGGTCCCGGAG
ACGGCCAGACTCGGAGGAGGCGTGTAGGCCTCGCAGCCTTAGCCGTCGTG
CTCGTTGCGGGCCTGGTGGCCACTATAGCCATCGTTTCGGGGGGCAAGAA
CAAAGCATGCAGCATTGTTTACCTTGCCCCCGGTAAGATCTTCGAGATTG
AGGAGGAGATCTTTGTCCGACGCCGCGTGGTGGTTATGGGAAACCCCAGC
ATTCTGCCCGTTCTTGACGGTGAAGAGTCTGTGCGCACGTGGCATGTCAC
CGCTGGTGGCTTCCTGGACCTGCGATTCGTGCAACAGCTGATGAGCGATG
GTATTTTTCGGGATCCCTTGCCTTTTGAGCGCTTCGCGAACACTGCACCC
ACGGGCAAGGTGAACGAGATTCGGGGTGGCAGTGTCATGATTGATTCGGA
TGCCTTGGGCGCAAAATTTACGGGTGTTCTCTTTATCGATGACCCAGATC
TTGAGTCGGGCATTGAGCGCAATATTCGGCGTACCCTGGGTCGTGAGGTC
TACCGCATCTATGGCGGTCACGTCTTCGCGGTGGGCGGACAGATTGGTAT
GTGAGCGAGCGACTCCACACTGCCGACAGGTACTGCGGCAGGTCCTGGGT
TGACTTTCGTCACGAATAAGGCCGGAGAGGCAGCTTACAAAGTATCGGAC
GAGGCCGCCGAGGCCAAAACCTCCGGCACTCCGCCTGATTTTTTGGTAGA
TGTCCAGATGGGGTTGGCAGTGGCGGGCGGTGGCTTGGAAGGCTTGCCCG
AGGATTCCTGTTTCGCCGCCGACTTTGACGAGCTCAAGGACGCCGTTGAG
GCCGACATCAAGGTGCCAGAAACGTCCATGACGACTACGCAGCAGGACCA
AAACAAGTCAGCCGGGAGGTCCGGAGCACAGACGACACCGATGGGTGACA
CAACTGTCCCTTTCTCTTTGATGTTTGACACTGCGACGACAACGAGTGAA
GCGCCGATGGCCGCAGCACATGCGAGCGGTCCCGGAGACGGCCAGACTCG
GAGGAGGCGTGTAGGCCTCGCAGCCTTAGCCGTCGTGCTCGTTGCGGGCC
TGGTGGCCACTATAGCCATCGTTTCGGGGGGCAAG back to top
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