jgi.p|Nanoce1779_2|569812, mRNA_10367 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569812
Unique NamemRNA_10367
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1209
Alignment locationscaffold_55:6302..7510 -

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Properties
Property NameValue
TranscriptId569898
TrackFilteredModels2
ProteinId569812
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:6302..7510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569812gene_10367Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10367CDS_10367Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569812mRNA_10367-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10367 ID=mRNA_10367|Name=jgi.p|Nanoce1779_2|569812|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ATGATTAAGCCTATTCGGTGCCTTCTCCCCTTCAAGGTGCTCCTGCTCGT
CGCCCTCTCCTCCGCGCAAGACGCAGCCTACACGCAAGATAGCGATGTAG
GGAGCGCTCTTCTTCAATCCACATTATCCACGTCGCCTATTATTCTGACG
TCTTTTACTCGCCCGCTCAATGCCAACGCCGACAAACAAGGCTTTCTCGG
ACCCAGCGGTGGCTGGTACGAAAATGGTCCTGGCAGCAATTTTCATAGCG
ATTACCCTTATCCTCGCGATCCTTATCTGGCCGACTCTCAATTTTGGCCG
GACTATGGTTGGGACCAACGACATAATTTCCCTTACATCGGGGTGGGGCA
TAAGAGCGTAGAGGAAGTGGAGAAGAGCACCGGCGGCTTGACACTCGTAG
AGGTGAAGACGGAGGCCGGGATGGCCAAGATAGGGACAGGGCTGGATAAG
GAAGGCCCTAGCAACAGCAAAAAACACAAGAAGGGCGAGGTCAAAAAAGT
GGCGACTGCGTCAGAGGCATTGACAGAAGTGGTGGAGCAAGAGAAGGAGG
GGAGTGACCTCTACGATACAGAGCAAGACAGCACGACCAAGCCGATGAAT
GAGGGAGACACAGTCTCAGAGAAGGTAAAGGTAGATGTAAGAAGAGGTAT
GGATGAAGAATCTTCAACGATGGCTAGAAGTGAGCGAGAGGGTGAAGATC
TAAAAGTGGATGCGAACGGCGTGGTGTCAGCGACTGACTTTATACCCGAT
GGCCACAACGACAAGGTGCAGGTTGATATTGGAGAAGTGAAAGAAGGAGA
AGGTATGGCTGTCCCCATCATACTGGCTGATAAGGACAAGCCATTTAGTG
GACAAGGTGGAGCCGTAAAGATAGTGACGACTCCAATCGAAGAATTAAAA
GCCAAAGGCGCAGGTCAGAGCGCTGTGGTTGTTGAAAAGCAATATTACAA
CGGGGCATATGGTGACTCCTTCTACGGCAATGGATATTTCAGTGCATACT
GGCAAAAAGGGCGCAAGGGTGGGGCCATCTCCTTGGGTGGAGACTGGGGA
GGTGGGTCAGGGTATGCGCCGTATTATGGATACGGGGGTGGACCGGGATA
TGATCAGTATGGGGGACCGGGTTATAATTATCAGTATGGAGGACCGGGTT
ATGGTTACTATGGAGGAGGATGTTGCCGTCGTTTGCGTGGATCTTTACAT
CGAGCTTGA
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protein sequence of jgi.p|Nanoce1779_2|569812

>mRNA_10367-protein ID=mRNA_10367-protein|Name=jgi.p|Nanoce1779_2|569812|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MIKPIRCLLPFKVLLLVALSSAQDAAYTQDSDVGSALLQSTLSTSPIILT
SFTRPLNANADKQGFLGPSGGWYENGPGSNFHSDYPYPRDPYLADSQFWP
DYGWDQRHNFPYIGVGHKSVEEVEKSTGGLTLVEVKTEAGMAKIGTGLDK
EGPSNSKKHKKGEVKKVATASEALTEVVEQEKEGSDLYDTEQDSTTKPMN
EGDTVSEKVKVDVRRGMDEESSTMARSEREGEDLKVDANGVVSATDFIPD
GHNDKVQVDIGEVKEGEGMAVPIILADKDKPFSGQGGAVKIVTTPIEELK
AKGAGQSAVVVEKQYYNGAYGDSFYGNGYFSAYWQKGRKGGAISLGGDWG
GGSGYAPYYGYGGGPGYDQYGGPGYNYQYGGPGYGYYGGGCCRRLRGSLH
RA*
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mRNA from alignment at scaffold_55:6302..7510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10367 ID=mRNA_10367|Name=jgi.p|Nanoce1779_2|569812|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at scaffold_55:6302..7510- (Nannochloropsis oceanica)
ATGATTAAGCCTATTCGGTGCCTTCTCCCCTTCAAGGTGCTCCTGCTCGT
CGCCCTCTCCTCCGCGCAAGACGCAGCCTACACGCAAGATAGCGATGTAG
GGAGCGCTCTTCTTCAATCCACATTATCCACGTCGCCTATTATTCTGACG
TCTTTTACTCGCCCGCTCAATGCCAACGCCGACAAACAAGGCTTTCTCGG
ACCCAGCGGTGGCTGGTACGAAAATGGTCCTGGCAGCAATTTTCATAGCG
ATTACCCTTATCCTCGCGATCCTTATCTGGCCGACTCTCAATTTTGGCCG
GACTATGGTTGGGACCAACGACATAATTTCCCTTACATCGGGGTGGGGCA
TAAGAGCGTAGAGGAAGTGGAGAAGAGCACCGGCGGCTTGACACTCGTAG
AGGTGAAGACGGAGGCCGGGATGGCCAAGATAGGGACAGGGCTGGATAAG
GAAGGCCCTAGCAACAGCAAAAAACACAAGAAGGGCGAGGTCAAAAAAGT
GGCGACTGCGTCAGAGGCATTGACAGAAGTGGTGGAGCAAGAGAAGGAGG
GGAGTGACCTCTACGATACAGAGCAAGACAGCACGACCAAGCCGATGAAT
GAGGGAGACACAGTCTCAGAGAAGGTAAAGGTAGATGTAAGAAGAGGTAT
GGATGAAGAATCTTCAACGATGGCTAGAAGTGAGCGAGAGGGTGAAGATC
TAAAAGTGGATGCGAACGGCGTGGTGTCAGCGACTGACTTTATACCCGAT
GGCCACAACGACAAGGTGCAGGTTGATATTGGAGAAGTGAAAGAAGGAGA
AGGTATGGCTGTCCCCATCATACTGGCTGATAAGGACAAGCCATTTAGTG
GACAAGGTGGAGCCGTAAAGATAGTGACGACTCCAATCGAAGAATTAAAA
GCCAAAGGCGCAGGTCAGAGCGCTGTGGTTGTTGAAAAGCAATATTACAA
CGGGGCATATGGTGACTCCTTCTACGGCAATGGATATTTCAGTGCATACT
GGCAAAAAGGGCGCAAGGGTGGGGCCATCTCCTTGGGTGGAGACTGGGGA
GGTGGGTCAGGGTATGCGCCGTATTATGGATACGGGGGTGGACCGGGATA
TGATCAGTATGGGGGACCGGGTTATAATTATCAGTATGGAGGACCGGGTT
ATGGTTACTATGGAGGAGGATGTTGCCGTCGTTTGCGTGGATCTTTACAT
CGAGCTTGA
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Coding sequence (CDS) from alignment at scaffold_55:6302..7510-

>mRNA_10367 ID=mRNA_10367|Name=jgi.p|Nanoce1779_2|569812|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at scaffold_55:6302..7510- (Nannochloropsis oceanica)
ATGATTAAGCCTATTCGGTGCCTTCTCCCCTTCAAGGTGCTCCTGCTCGT
CGCCCTCTCCTCCGCGCAAGACGCAGCCTACACGCAAGATAGCGATGTAG
GGAGCGCTCTTCTTCAATCCACATTATCCACGTCGCCTATTATTCTGACG
TCTTTTACTCGCCCGCTCAATGCCAACGCCGACAAACAAGGCTTTCTCGG
ACCCAGCGGTGGCTGGTACGAAAATGGTCCTGGCAGCAATTTTCATAGCG
ATTACCCTTATCCTCGCGATCCTTATCTGGCCGACTCTCAATTTTGGCCG
GACTATGGTTGGGACCAACGACATAATTTCCCTTACATCGGGGTGGGGCA
TAAGAGCGTAGAGGAAGTGGAGAAGAGCACCGGCGGCTTGACACTCGTAG
AGGTGAAGACGGAGGCCGGGATGGCCAAGATAGGGACAGGGCTGGATAAG
GAAGGCCCTAGCAACAGCAAAAAACACAAGAAGGGCGAGGTCAAAAAAGT
GGCGACTGCGTCAGAGGCATTGACAGAAGTGGTGGAGCAAGAGAAGGAGG
GGAGTGACCTCTACGATACAGAGCAAGACAGCACGACCAAGCCGATGAAT
GAGGGAGACACAGTCTCAGAGAAGGTAAAGGTAGATGTAAGAAGAGGTAT
GGATGAAGAATCTTCAACGATGGCTAGAAGTGAGCGAGAGGGTGAAGATC
TAAAAGTGGATGCGAACGGCGTGGTGTCAGCGACTGACTTTATACCCGAT
GGCCACAACGACAAGGTGCAGGTTGATATTGGAGAAGTGAAAGAAGGAGA
AGGTATGGCTGTCCCCATCATACTGGCTGATAAGGACAAGCCATTTAGTG
GACAAGGTGGAGCCGTAAAGATAGTGACGACTCCAATCGAAGAATTAAAA
GCCAAAGGCGCAGGTCAGAGCGCTGTGGTTGTTGAAAAGCAATATTACAA
CGGGGCATATGGTGACTCCTTCTACGGCAATGGATATTTCAGTGCATACT
GGCAAAAAGGGCGCAAGGGTGGGGCCATCTCCTTGGGTGGAGACTGGGGA
GGTGGGTCAGGGTATGCGCCGTATTATGGATACGGGGGTGGACCGGGATA
TGATCAGTATGGGGGACCGGGTTATAATTATCAGTATGGAGGACCGGGTT
ATGGTTACTATGGAGGAGGATGTTGCCGTCGTTTGCGTGGATCTTTACAT
CGAGCTTGA
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Synonyms
Publications