jgi.p|Nanoce1779_2|352955, mRNA_10604 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|352955
Unique Name	mRNA_10604
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1531
Alignment location	scaffold_56:101079..102791 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	353041
Track	FilteredModels2
ProteinId	352955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_56	supercontig	scaffold_56:101079..102791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|352955	gene_10604	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|352955	mRNA_10604-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10604	CDS_10604	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_56:101079..102791+
coding sequence from alignment at scaffold_56:101079..102791+

mRNA sequence

>mRNA_10604 ID=mRNA_10604|Name=jgi.p|Nanoce1779_2|352955|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp
CAAGAAATCTATATCTAGAAGAGTTAATGGTCTATCTGCTGGCTTATCAA
GCAAGACAAGCGGTCTCCTTCCTCTTCTAATTTTACTTTCAGAGCGAGGA
GACTTTCTCTCCTGCCTTGGACCAGTAGATGCCTCTCGCTTTGGTAGCTC
GCCTTACGGCCGCAGAATGGATCGATCGACAGACGTAGGGAAATAAAGGC
ATATTCAATCGTATATATCTTTGCCTGCCTCAGCCATCACGCCTTTACAG
GCGCTGACCAAGCCTTACGGACATAAAAACTCTAAAAAATGCACCGGCTC
GGACATCTCCCCTCGTACATTTCCCTTCCGCTCTACTTCCGCTTGCTAAC
TATGGCTTGCTCTCCCATTCTTATGTCACAACCTGTAGGCCTCCTCACTC
TCGACACATGCCCTTCCCCCCAACACACGCACACAGAGCCCTTCCCAATG
AACATGGCTGCGTCGCTCGATCAGAGCTTAGGGATCTTCGATTATTTGCC
CAAGGCGGAGACTTCCTCCCTGTCGAATAGCATGACCGACATGGGGTCTG
GGACCCTCGTCGGTACGGGGCCACGAAGAGGAAGACGACGAGGAAAGTGG
GGAGGGTCAGGGCTTTTCGCAGTCCTACAGCTCCTCCTTTCCGGCCTGCT
CTTCGAGCACCACAACCGACACCGCTGGCACCACGGCGACGACCACAACG
ACGGGTACGGCGGCAGTGAATGTGTCAGTTGGTGCCGTTGCCGGCACACG
GAAACGAATTGCCAGCAGTCGCGCCCAGGGAGCATCGGACGACAAGCGTC
AGAAGAAGTTGGAGCTGAACCGTTTAGCTTCGAGGGAATCCCGCAAGCGC
AAAAGCGACGTTTGGAAGAGCTGCAGCGATCTGTCCTCATCTTGACCCAT
GAAAATCACACCCTGCGTGAACAGAACGAGTTGCTGCGGCAGATGCTCAT
CACCCGTTTGCCTTCGTCCGAGTTGGCAAGTGCCTTGGGTGGGGCTGCAG
GAGGGGTGGGAGGAGGAGCAGGAGCGGTGACAGCAGCGACAGCAGGAGCA
GCACCAATGGTTACAGCGGCAGCCATGGGAGGGATGGGGTTTGTGGCGGC
GAAGGGAGAGATGAATGAAGAAGAGTCGCATAGGCTGGGGCAAGAGCTGG
GAGGGGAGGGAGGACATGACCTAGGGAGCTCAATATCCTCGGCGGCAGTG
GACTTCTTTTTGCCGCACCCGAACATGATTTTGGGGGGGTTAAAGGAAAG
TGGTGACGCTGTGGAAGGAGGGGAGAGGCTGCGGATGGTGGGGGCGGCAT
AAGGAGGATAGGAGGGGTCGAAAGAGGATGGTGATGTGGTGGAGGAGGAG
GGAGATGAGAACGGGTAACTGACGTGGTGGAGGGGAAGGCGAGTCGAGGT
CGAAATGGCGCGAAGAGGGCAGGGTGGTCGAAAGAGGGAGAGAGTAACCG
AGGAAAGATGCACCACCTGAGCTCAAGGACAGGTGAACTGTCCCTCTTCT
CTGCCTCCTGTATTGTGTTTCCCCCGGCGTG

protein sequence of jgi.p|Nanoce1779_2|352955

>mRNA_10604-protein ID=mRNA_10604-protein|Name=jgi.p|Nanoce1779_2|352955|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MHRLGHLPSYISLPLYFRLLTMACSPILMSQPVGLLTLDTCPSPQHTHTE
PFPMNMAASLDQSLGIFDYLPKAETSSLSNSMTDMGSGTLVGTGPRRGRR
RGKWGGSGLFAVLQLLLSGLLFEHHNRHRWHHGDDHNDGYGGSECVSWCR
CRHTETNCQQSRPGSIGRQASEEVGAEPFSFEGIPQAQKRRLEELQRSVL
ILTHENHTLREQNELLRQMLITRLPSSELASALGGAAGGVGGGAGAVTAA
TAGAAPMVTAAAMGGMGFVAAKGEMNEEESHRLGQELGGEGGHDLGSSIS
SAAVDFFLPHPNMILGGLKESGDAVEGGERLRMVGAA*

mRNA from alignment at scaffold_56:101079..102791+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10604 ID=mRNA_10604|Name=jgi.p|Nanoce1779_2|352955|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp|location=Sequence derived from alignment at scaffold_56:101079..102791+ (Nannochloropsis oceanica)
CAAGAAATCTATATCTAGAAGAGTTAATGGTCTATCTGCTGGCTTATCAA
GCAAGACAAGCGGTCTCCTTCCTCTTCTAATTTTACTTTCAGAGCGAGGA
GACTTTCTCTCCTGCCTTGGACCAGTAGATGCCTCTCGCTTTGGTAGCTC
GCCTTACGGCCGCAGAATGGATCGATCGACAGACGTAGGGAAATAAAGGC
ATATTCAATCGTATATATCTTTGCCTGCCTCAGCCATCACGCCTTTACAG
GCGCTGACCAAGCCTTACGGACATAAAAACTCTAAAAAATGCACCGGCTC
GGACATCTCCCCTCGTACATTTCCCTTCCGCTCTACTTCCGCTTGCTAAC
TATGGCTTGCTCTCCCATTCTTATGTCACAACCTGTAGGCCTCCTCACTC
TCGACACATGCCCTTCCCCCCAACACACGCACACAGAGCCCTTCCCAATG
AACATGGCTGCGTCGCTCGATCAGAGCTTAGGGATCTTCGATTATTTGCC
CAAGGCGGAGACTTCCTCCCTGTCGAATAGCATGACCGACATGGGGTCTG
GGACCCTCGTCGGTACGGGGCCACGAAGAGGAAGACGACGAGGAAAGTGG
GGAGGGTCAGGGCTTTTCGCAGTCCTACAGCTCCTCCTTTCCGGCCTGCT
CTTCGAGCACCACAACCGACACCGCTGGCACCACGGCGACGACCACAACG
ACGGGTACGGCGGCAGTGAATGTGTCAGTTGGTGCCGTTGCCGGCACACG
GAAACGAATTGCCAGCAGTCGCGCCCAGGGAGCATCGGACGACAAGCGTC
AGAAGAAGTTGGAGCTGAACCGTTTAGCTTCGAGGGTACGTAGACGTGTG
CATGCAGTTTCCGTACGCAGTGTTTGGTGGAGGAAGAAAAGGAGGCAGGC
ATACTTATAAGCCGCCCCCCACACTCAAGCACGCATTGCGCTCTCTACTT
TATTTCTCGTGTCTCAGTCTTTTTCCCCTCCCTCCCTCCCTCCCTCCCTC
CCCTTTCTTCTCCACAGGAATCCCGCAAGCGCAAAAGCGACGTTTGGAAG
AGCTGCAGCGATCTGTCCTCATCTTGACCCATGAAAATCACACCCTGCGT
GAACAGAACGAGTTGCTGCGGCAGATGCTCATCACCCGTTTGCCTTCGTC
CGAGTTGGCAAGTGCCTTGGGTGGGGCTGCAGGAGGGGTGGGAGGAGGAG
CAGGAGCGGTGACAGCAGCGACAGCAGGAGCAGCACCAATGGTTACAGCG
GCAGCCATGGGAGGGATGGGGTTTGTGGCGGCGAAGGGAGAGATGAATGA
AGAAGAGTCGCATAGGCTGGGGCAAGAGCTGGGAGGGGAGGGAGGACATG
ACCTAGGGAGCTCAATATCCTCGGCGGCAGTGGACTTCTTTTTGCCGCAC
CCGAACATGATTTTGGGGGGGTTAAAGGAAAGTGGTGACGCTGTGGAAGG
AGGGGAGAGGCTGCGGATGGTGGGGGCGGCATAAGGAGGATAGGAGGGGT
CGAAAGAGGATGGTGATGTGGTGGAGGAGGAGGGAGATGAGAACGGGTAA
CTGACGTGGTGGAGGGGAAGGCGAGTCGAGGTCGAAATGGCGCGAAGAGG
GCAGGGTGGTCGAAAGAGGGAGAGAGTAACCGAGGAAAGATGCACCACCT
GAGCTCAAGGACAGGTGAACTGTCCCTCTTCTCTGCCTCCTGTATTGTGT
TTCCCCCGGCGTG

Coding sequence (CDS) from alignment at scaffold_56:101079..102791+

>mRNA_10604 ID=mRNA_10604|Name=jgi.p|Nanoce1779_2|352955|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_56:101079..102791+ (Nannochloropsis oceanica)
ATGCACCGGCTCGGACATCTCCCCTCGTACATTTCCCTTCCGCTCTACTT
CCGCTTGCTAACTATGGCTTGCTCTCCCATTCTTATGTCACAACCTGTAG
GCCTCCTCACTCTCGACACATGCCCTTCCCCCCAACACACGCACACAGAG
CCCTTCCCAATGAACATGGCTGCGTCGCTCGATCAGAGCTTAGGGATCTT
CGATTATTTGCCCAAGGCGGAGACTTCCTCCCTGTCGAATAGCATGACCG
ACATGGGGTCTGGGACCCTCGTCGGTACGGGGCCACGAAGAGGAAGACGA
CGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGTCCTACAGCTCCTCCT
TTCCGGCCTGCTCTTCGAGCACCACAACCGACACCGCTGGCACCACGGCG
ACGACCACAACGACGGGTACGGCGGCAGTGAATGTGTCAGTTGGTGCCGT
TGCCGGCACACGGAAACGAATTGCCAGCAGTCGCGCCCAGGGAGCATCGG
ACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGTTTAGCTTCGAGGGAA
TCCCGCAAGCGCAAAAGCGACGTTTGGAAGAGCTGCAGCGATCTGTCCTC
ATCTTGACCCATGAAAATCACACCCTGCGTGAACAGAACGAGTTGCTGCG
GCAGATGCTCATCACCCGTTTGCCTTCGTCCGAGTTGGCAAGTGCCTTGG
GTGGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAGCGGTGACAGCAGCG
ACAGCAGGAGCAGCACCAATGGTTACAGCGGCAGCCATGGGAGGGATGGG
GTTTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGAGTCGCATAGGCTGG
GGCAAGAGCTGGGAGGGGAGGGAGGACATGACCTAGGGAGCTCAATATCC
TCGGCGGCAGTGGACTTCTTTTTGCCGCACCCGAACATGATTTTGGGGGG
GTTAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGAGAGGCTGCGGATGG
TGGGGGCGGCATAAATGCACCGGCTCGGACATCTCCCCTCGTACATTTCC
CTTCCGCTCTACTTCCGCTTGCTAACTATGGCTTGCTCTCCCATTCTTAT
GTCACAACCTGTAGGCCTCCTCACTCTCGACACATGCCCTTCCCCCCAAC
ACACGCACACAGAGCCCTTCCCAATGAACATGGCTGCGTCGCTCGATCAG
AGCTTAGGGATCTTCGATTATTTGCCCAAGGCGGAGACTTCCTCCCTGTC
GAATAGCATGACCGACATGGGGTCTGGGACCCTCGTCGGTACGGGGCCAC
GAAGAGGAAGACGACGAGGAAAGTGGGGAGGGTCAGGGCTTTTCGCAGTC
CTACAGCTCCTCCTTTCCGGCCTGCTCTTCGAGCACCACAACCGACACCG
CTGGCACCACGGCGACGACCACAACGACGGGTACGGCGGCAGTGAATGTG
TCAGTTGGTGCCGTTGCCGGCACACGGAAACGAATTGCCAGCAGTCGCGC
CCAGGGAGCATCGGACGACAAGCGTCAGAAGAAGTTGGAGCTGAACCGTT
TAGCTTCGAGGGAATCCCGCAAGCGCAAAAGCGACGTTTGGAAGAGCTGC
AGCGATCTGTCCTCATCTTGACCCATGAAAATCACACCCTGCGTGAACAG
AACGAGTTGCTGCGGCAGATGCTCATCACCCGTTTGCCTTCGTCCGAGTT
GGCAAGTGCCTTGGGTGGGGCTGCAGGAGGGGTGGGAGGAGGAGCAGGAG
CGGTGACAGCAGCGACAGCAGGAGCAGCACCAATGGTTACAGCGGCAGCC
ATGGGAGGGATGGGGTTTGTGGCGGCGAAGGGAGAGATGAATGAAGAAGA
GTCGCATAGGCTGGGGCAAGAGCTGGGAGGGGAGGGAGGACATGACCTAG
GGAGCTCAATATCCTCGGCGGCAGTGGACTTCTTTTTGCCGCACCCGAAC
ATGATTTTGGGGGGGTTAAAGGAAAGTGGTGACGCTGTGGAAGGAGGGGA
GAGGCTGCGGATGGTGGGGGCGGCATAA

Synonyms

Publications