jgi.p|Nanoce1779_2|354287, gene_10465 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|354287
Unique Name	gene_10465
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_57:87333..88480 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	354373
ProteinId	354287
Product name	High mobility group box domain-containing protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_57	supercontig	scaffold_57:87333..88480 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL079	ncniL079	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G00040	NO29G00040	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|354287	mRNA_10465-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|354287	mRNA_10465	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|354287

>mRNA_10465-protein ID=mRNA_10465-protein|Name=jgi.p|Nanoce1779_2|354287|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERREN
DLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQAAKEDQE
RKKRGGGQRGILMVPADQTAFLETLEWDRTQQ*

Synonyms

Publications