jgi.p|Nanoce1779_2|354287, mRNA_10465 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|354287
Unique NamemRNA_10465
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length791
Alignment locationscaffold_57:87333..88480 -

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Properties
Property NameValue
TranscriptId354373
TrackFilteredModels2
ProteinId354287
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:87333..88480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354287gene_10465Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354287mRNA_10465-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10465CDS_10465Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10465 ID=mRNA_10465|Name=jgi.p|Nanoce1779_2|354287|organism=Nannochloropsis oceanica|type=mRNA|length=791bp
GGAAGAGTGGGCTCGGCTGCCTGGTTCGTTCAGGGCGTACTGGGAAGGCC
TTGCGGAGGAGGACAAACAGAGGTACAGCAAAGAGATGCGCGCCTGGGAC
CAAGCAGGTCAGAAAAAGAGAAGGGAGGGAGGAAGGGAAAGAGAAAAGGC
AACGTAGTCACCTAGCTACCGCACACACACATACAGGCAAGGCGCGGGAT
ATGGCTTCGGTTAGGGAGCTAGAGGGAAGTAGGAAGAGGAAGCTAAGAGA
CCCGTCTGCACCCAAGCGCCCGATTTCCGCATACTTCGCATTTAGCAAAG
ACCACCGGAGGCGTTTGCGTAACGTTCTTCTGGCGGAGCGGCGCGAGAAT
GACCTCGAGGCTCTGCCCCCGTCCAACGCCGACGTGAGTAGGCGGGTGTC
AGCCGAGTGGGCGTGTATGACAGAGGAGGAGAAGGGGCCTTACCTTGCGG
CGGCGGAGAGGGAGATGGAGAGATATCAGGCCGCGAAGGAGGATCAGGAA
AGGAAGAAGAGGGGGGGAGGGCAGAGGGGGATATTGATGGTGCCTGCTGA
TCAAACGGCTTTTTTGGAGACGTTGGAGTGGGATCGCACCCAGCAATGAG
TGAGGCTGAAGGAAGCAAGGGTCGCGTTTAGAAGCGAGAAATGAAGGAAA
AAAGCGAAGGGAGAGGCATGGGTAGCTCCACACCAGCGAGGGAGCATGGC
CGAAGAGGAGAGTCTGAGTGGAAATTGGAAACGTTGGTGGTATCCCGGAG
CAAGTGGCCGCCTTAAAGGGGCAAGACTGGGGTGGGTGGGG
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protein sequence of jgi.p|Nanoce1779_2|354287

>mRNA_10465-protein ID=mRNA_10465-protein|Name=jgi.p|Nanoce1779_2|354287|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MASVRELEGSRKRKLRDPSAPKRPISAYFAFSKDHRRRLRNVLLAERREN
DLEALPPSNADVSRRVSAEWACMTEEEKGPYLAAAEREMERYQAAKEDQE
RKKRGGGQRGILMVPADQTAFLETLEWDRTQQ*
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mRNA from alignment at scaffold_57:87333..88480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10465 ID=mRNA_10465|Name=jgi.p|Nanoce1779_2|354287|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at scaffold_57:87333..88480- (Nannochloropsis oceanica)
GGAAGAGTGGGCTCGGCTGCCTGGTTCGTTCAGGGCGTACTGGGAAGGCC
TTGCGGAGGAGGACAAACAGAGGTACAGCAAAGAGATGCGCGCCTGGGAC
CAAGCAGGTCAGAAAAAGAGAAGGGAGGGAGGAAGGGAAAGAGAAAAGGC
AACGTAGTCACCTAGCTACCGCACACACACATACAGGCAAGGCGCGGGAT
ATGGCTTCGGTTAGGGAGCTAGAGGGAAGTAGGAAGAGGAAGCTAAGAGA
CCCGGTACGTCAGCCGAACGATTCCTTGGAGTGGGAAGTCGATTTCTGTA
GCTGTTACATCTTGTCTTGCAAAGCATGCATCCATGGCTCTTGTCCTCCC
CCTCCCCTCCTGTCTTTCAATCTCACTCCACCGTTCAAATGCTTCTTCCC
TCGCGCTCGCCCTCCTTCCTCCTTTATGACATACTCGAGCCCTCGGGTCC
GCTTGCTTTGCGTACAAGAATGACGACCACCACCCAGGCAAACGTGGCGC
GTAACATTTCCCTCCCTCCCTCTCTCCCTCCCTCCCCCCTCTTCCTCAGT
CTGCACCCAAGCGCCCGATTTCCGCATACTTCGCATTTAGCAAAGACCAC
CGGAGGCGTTTGCGTAACGTTCTTCTGGCGGAGCGGCGCGAGAATGACCT
CGAGGCTCTGCCCCCGTCCAACGCCGACGTGAGTAGGCGGGTGTCAGCCG
AGTGGGCGTGTATGACAGAGGAGGAGAAGGGGCCTTACCTTGCGGCGGCG
GAGAGGGAGATGGAGAGATATCAGGCCGCGAAGGAGGATCAGGAAAGGAA
GAAGAGGGGGCTAGCGGGAAGGGATGAGGAGGAGGAGGAGGAAGAGAAGG
AGGAGGGGGAGGGGGGGGGGGGGGAGGGCAGAGGGGGATATTGATGGTGC
CTGCTGATCAAACGGCTTTTTTGGAGACGTTGGAGTGGGATCGCACCCAG
CAATGAGTGAGGCTGAAGGAAGCAAGGGTCGCGTTTAGAAGCGAGAAATG
AAGGAAAAAAGCGAAGGGAGAGGCATGGGTAGCTCCACACCAGCGAGGGA
GCATGGCCGAAGAGGAGAGTCTGAGTGGAAATTGGAAACGTTGGTGGTAT
CCCGGAGCAAGTGGCCGCCTTAAAGGGGCAAGACTGGGGTGGGTGGGG
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Coding sequence (CDS) from alignment at scaffold_57:87333..88480-

>mRNA_10465 ID=mRNA_10465|Name=jgi.p|Nanoce1779_2|354287|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_57:87333..88480- (Nannochloropsis oceanica)
GGGGGGGAGGGCAGAGGGGGATATTGATGGTGCCTGCTGATCAAACGGCT
TTTTTGGAGACGTTGGAGTGGGATCGCACCCAGCAATGATCTGCACCCAA
GCGCCCGATTTCCGCATACTTCGCATTTAGCAAAGACCACCGGAGGCGTT
TGCGTAACGTTCTTCTGGCGGAGCGGCGCGAGAATGACCTCGAGGCTCTG
CCCCCGTCCAACGCCGACGTGAGTAGGCGGGTGTCAGCCGAGTGGGCGTG
TATGACAGAGGAGGAGAAGGGGCCTTACCTTGCGGCGGCGGAGAGGGAGA
TGGAGAGATATCAGGCCGCGAAGGAGGATCAGGAAAGGAAGAAGAATGGC
TTCGGTTAGGGAGCTAGAGGGAAGTAGGAAGAGGAAGCTAAGAGACCCGG
GGGGGGAGGGCAGAGGGGGATATTGATGGTGCCTGCTGATCAAACGGCTT
TTTTGGAGACGTTGGAGTGGGATCGCACCCAGCAATGATCTGCACCCAAG
CGCCCGATTTCCGCATACTTCGCATTTAGCAAAGACCACCGGAGGCGTTT
GCGTAACGTTCTTCTGGCGGAGCGGCGCGAGAATGACCTCGAGGCTCTGC
CCCCGTCCAACGCCGACGTGAGTAGGCGGGTGTCAGCCGAGTGGGCGTGT
ATGACAGAGGAGGAGAAGGGGCCTTACCTTGCGGCGGCGGAGAGGGAGAT
GGAGAGATATCAGGCCGCGAAGGAGGATCAGGAAAGGAAGAAGAATGGCT
TCGGTTAGGGAGCTAGAGGGAAGTAGGAAGAGGAAGCTAAGAGACCCGGG
GGGGGAGGGCAGAGGGGGATATTGATGGTGCCTGCTGATCAAACGGCTTT
TTTGGAGACGTTGGAGTGGGATCGCACCCAGCAATGATCTGCACCCAAGC
GCCCGATTTCCGCATACTTCGCATTTAGCAAAGACCACCGGAGGCGTTTG
CGTAACGTTCTTCTGGCGGAGCGGCGCGAGAATGACCTCGAGGCTCTGCC
CCCGTCCAACGCCGACGTGAGTAGGCGGGTGTCAGCCGAGTGGGCGTGTA
TGACAGAGGAGGAGAAGGGGCCTTACCTTGCGGCGGCGGAGAGGGAGATG
GAGAGATATCAGGCCGCGAAGGAGGATCAGGAAAGGAAGAAGAATGGCTT
CGGTTAGGGAGCTAGAGGGAAGTAGGAAGAGGAAGCTAAGAGACCCG
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Synonyms
Publications