jgi.p|Nanoce1779_2|407449, mRNA_10835 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|407449
Unique Name	mRNA_10835
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1564
Alignment location	scaffold_72:29341..31154 +

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Properties


Property Name	Value
TranscriptId	407535
Track	FilteredModels2
ProteinId	407449

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_72	supercontig	scaffold_72:29341..31154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|407449	gene_10835	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|407449	mRNA_10835-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10835	CDS_10835	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_72:29341..31154+
coding sequence from alignment at scaffold_72:29341..31154+

mRNA sequence

>mRNA_10835 ID=mRNA_10835|Name=jgi.p|Nanoce1779_2|407449|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp
TGGCCATCGGGATCATTAAGGACGGCGGGACCGAGGGCGGGAGGGAGGAA
GGGAGGGAAGGCGGGCACGAGGACCTCTTGCAGCAGCAGCTGCACCACTA
CCCCCCACCACCAGGACACGGGCGGCCTGCCCTCTCTCTCTCCCCCTCCC
CTTCCTCAGTACATCCATGAGCAGCATCAGCAGCAACAGCAGCACCAGCA
GCACCAGCAGCCGTCGTCGACACACCTCCATCATCTCCACCCCCATCGAC
AGCACCAGCCTCCCAACATGCATCCCCCCTCCTACTCCCCCTCCCTCCCC
CCCACCCACGGCCCTCCCTCCCTTCCACACGGACTCAAATACGTCCCTCC
CGCGCACGCGTCAGCGGCAGCTTTCGGGACTCCCTCCCTCCCTCCCTCTC
TCCCTCCCCCTCCTTCTTCCTACTTCTACCCCGCGCAGGTCGATAACGGC
TACAGCCACGCCCCTGCTCCTTCCTCTTACGGGCACCACCACCAATTCCT
TCTTCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGGCTGCCTACC
CCCCTCCCTACCAGGCCATGCTGGCCACTGCAGGAGGCGGAGAGGGAGGG
AGGGTGGAGCCGAAAAAGCGGAAGAGCAAGAGAGCGCCCCCGGGAGGGCC
TTACTTCGACGAAGAGGGAATGACCACAGGCAAGGGAAAGAAGCGCAACC
CGGTAGCCTGCGAGGCTTGTGGGCAAATCTTCTCCAACAAAGGGAACCTC
ATCCGACACCGGCAGCAGTCGTGCCGTGTACTGGTCAAGTCCCGTCCCGC
AGGCAGCGGCGGCAGCAGCAGCAGCAGCAACAGCAACAGCACCACCACCA
CCACCAGCAGTAGCAGTAGCAGCAGCAGCTCTCAAGGCAGCAACGGCAGC
GGCATGGGGGGGACTTCGAGCCTTCCTCCCTCCTCCTCCTACCTCATGCC
GTCTCAGCAGCAGCTCCTTCAGCAACAACAGCAGCAGCAGCAACAGCAGC
AGCAGCAACAGCACCAGGTATACATGATGCAGCATCAGGGAGGCGTCAAT
CTATAGGTACAGGAGAAAGGTAGGAAGAATGCAGTAACAGCAGCAGCAGC
AGCAGCTGGATTCGGTTAAGCAGGGAGAAAAACAGAAGGGGGAGTAATGT
CGGTAGGAAGGAAATGGGAAAGAGGCAGACAGAGAGAGAGAAAGTGCGTG
TGTATGGGTGTGGCAAAGATCCACGAGACTGTAGGGATTGGCGACACAGA
GTCAGGTGACACAAGGAAAGGAACGGGAAAGAGAGATGGAGGGAAGAGAA
CAAAGACGAGCGCTGAAAGCACGCGAGCCGTATAACATATCCTACATATA
ATTAATATATCCTACGTATGATTACCCTCCTGCATGGCCCCAGTACCGCC
GGCCTGCTCTTCTACTGCAGGTCGGCCTCTTCCGGGTAGCCCTCTGAGAT
GAAATTAGATGAGGTGGGATAGAACGAGAAGCCTCGCACATTGTGTCTGC
TGGAACCGCCTCCTTTCCCTACGGTTGGAATCGTCTGGTGGTGTGGTTGA
TATGCTCGTTTTGT

protein sequence of jgi.p|Nanoce1779_2|407449

>mRNA_10835-protein ID=mRNA_10835-protein|Name=jgi.p|Nanoce1779_2|407449|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MHPPSYSPSLPPTHGPPSLPHGLKYVPPAHASAAAFGTPSLPPSLPPPPS
SYFYPAQVDNGYSHAPAPSSYGHHHQFLLQQQQQQQQQQQQAAYPPPYQA
MLATAGGGEGGRVEPKKRKSKRAPPGGPYFDEEGMTTGKGKKRNPVACEA
CGQIFSNKGNLIRHRQQSCRVLVKSRPAGSGGSSSSSNSNSTTTTTSSSS
SSSSSQGSNGSGMGGTSSLPPSSSYLMPSQQQLLQQQQQQQQQQQQQQHQ
VYMMQHQGGVNL*

mRNA from alignment at scaffold_72:29341..31154+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10835 ID=mRNA_10835|Name=jgi.p|Nanoce1779_2|407449|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at scaffold_72:29341..31154+ (Nannochloropsis oceanica)
TGGCCATCGGGATCATTAAGGACGGCGGGACCGAGGGCGGGAGGGAGGAA
GGGAGGGAAGGCGGGCACGAGGACCTCTTGCAGCAGCAGCTGCACCACTA
CCCCCCACCACCAGGACACGGGCGGCCTGCCCTCTCTCTCTCCCCCTCCC
CTTCCTCAGTACATCCATGAGCAGCATCAGCAGCAACAGCAGCACCAGCA
GCACCAGCAGCCGTCGTCGACACACCTCCATCATCTCCACCCCCATCGAC
AGCACCAGCCTCCCAACATGCATCCCCCCTCCTACTCCCCCTCCCTCCCC
CCCACCCACGGCCCTCCCTCCCTTCCACACGGACTCAAATACGTCCCTCC
CGCGCACGCGTCAGCGGCAGCTTTCGGGACTCCCTCCCTCCCTCCCTCTC
TCCCTCCCCCTCCTTCTTCCTACTTCTACCCCGCGCAGGTTAGAGAGCTG
AAGGGAGGGAGTGAGGGAGCGAGGGGGCGGTCTGCTGTGCTGGTGTCAAT
ATGTAGATGGGGGGGTATCTTGAAATCAGATTTGTCATTCTCACTTCCCC
TCCCTCCCTCCCTCCCCCCCTCCCTCCTCCCTCCAGGTCGATAACGGCTA
CAGCCACGCCCCTGCTCCTTCCTCTTACGGGCACCACCACCAATTCCTTC
TTCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGGCTGCCTACCCC
CCTCCCTACCAGGCCATGCTGGCCACTGCAGGAGGCGGAGAGGGAGGGAG
GGTGGAGCCGAAAAAGCGGAAGAGCAAGAGAGCGCCCCCGGGAGGGCCTT
ACTTCGACGAAGAGGGAATGACCACAGGTAGGGAGGGAGAAAGAGAATCA
AGGAGGATGTCGAGAATAGGGGCTCTTACGACAACTGTGTATATTCATGG
ACTCACTTCCCCTCCCTCCCTCCCTGCAGGCAAGGGAAAGAAGCGCAACC
CGGTAGCCTGCGAGGCTTGTGGGCAAATCTTCTCCAACAAAGGGAACCTC
ATCCGACACCGGCAGCAGTCGTGCCGTGTACTGGTCAAGTCCCGTCCCGC
AGGCAGCGGCGGCAGCAGCAGCAGCAGCAACAGCAACAGCACCACCACCA
CCACCAGCAGTAGCAGTAGCAGCAGCAGCTCTCAAGGCAGCAACGGCAGC
GGCATGGGGGGGACTTCGAGCCTTCCTCCCTCCTCCTCCTACCTCATGCC
GTCTCAGCAGCAGCTCCTTCAGCAACAACAGCAGCAGCAGCAACAGCAGC
AGCAGCAACAGCACCAGGTATACATGATGCAGCATCAGGGAGGCGTCAAT
CTATAGGTACAGGAGAAAGGTAGGAAGAATGCAGTAACAGCAGCAGCAGC
AGCAGCTGGATTCGGTTAAGCAGGGAGAAAAACAGAAGGGGGAGTAATGT
CGGTAGGAAGGAAATGGGAAAGAGGCAGACAGAGAGAGAGAAAGTGCGTG
TGTATGGGTGTGGCAAAGATCCACGAGACTGTAGGGATTGGCGACACAGA
GTCAGGTGACACAAGGAAAGGAACGGGAAAGAGAGATGGAGGGAAGAGAA
CAAAGACGAGCGCTGAAAGCACGCGAGCCGTATAACATATCCTACATATA
ATTAATATATCCTACGTATGATTACCCTCCTGCATGGCCCCAGTACCGCC
GGCCTGCTCTTCTACTGCAGGTCGGCCTCTTCCGGGTAGCCCTCTGAGAT
GAAATTAGATGAGGTGGGATAGAACGAGAAGCCTCGCACATTGTGTCTGC
TGGAACCGCCTCCTTTCCCTACGGTTGGAATCGTCTGGTGGTGTGGTTGA
TATGCTCGTTTTGT

Coding sequence (CDS) from alignment at scaffold_72:29341..31154+

>mRNA_10835 ID=mRNA_10835|Name=jgi.p|Nanoce1779_2|407449|organism=Nannochloropsis oceanica|type=CDS|length=2367bp|location=Sequence derived from alignment at scaffold_72:29341..31154+ (Nannochloropsis oceanica)
ATGCATCCCCCCTCCTACTCCCCCTCCCTCCCCCCCACCCACGGCCCTCC
CTCCCTTCCACACGGACTCAAATACGTCCCTCCCGCGCACGCGTCAGCGG
CAGCTTTCGGGACTCCCTCCCTCCCTCCCTCTCTCCCTCCCCCTCCTTCT
TCCTACTTCTACCCCGCGCAGGTCGATAACGGCTACAGCCACGCCCCTGC
TCCTTCCTCTTACGGGCACCACCACCAATTCCTTCTTCAGCAGCAGCAAC
AGCAGCAGCAGCAGCAGCAACAGGCTGCCTACCCCCCTCCCTACCAGGCC
ATGCTGGCCACTGCAGGAGGCGGAGAGGGAGGGAGGGTGGAGCCGAAAAA
GCGGAAGAGCAAGAGAGCGCCCCCGGGAGGGCCTTACTTCGACGAAGAGG
GAATGACCACAGGCAAGGGAAAGAAGCGCAACCCGGTAGCCTGCGAGGCT
TGTGGGCAAATCTTCTCCAACAAAGGGAACCTCATCCGACACCGGCAGCA
GTCGTGCCGTGTACTGGTCAAGTCCCGTCCCGCAGGCAGCGGCGGCAGCA
GCAGCAGCAGCAACAGCAACAGCACCACCACCACCACCAGCAGTAGCAGT
AGCAGCAGCAGCTCTCAAGGCAGCAACGGCAGCGGCATGGGGGGGACTTC
GAGCCTTCCTCCCTCCTCCTCCTACCTCATGCCGTCTCAGCAGCAGCTCC
TTCAGCAACAACAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCACCAG
GTATACATGATGCAGCATCAGGGAGGCGTCAATCTATAGATGCATCCCCC
CTCCTACTCCCCCTCCCTCCCCCCCACCCACGGCCCTCCCTCCCTTCCAC
ACGGACTCAAATACGTCCCTCCCGCGCACGCGTCAGCGGCAGCTTTCGGG
ACTCCCTCCCTCCCTCCCTCTCTCCCTCCCCCTCCTTCTTCCTACTTCTA
CCCCGCGCAGGTCGATAACGGCTACAGCCACGCCCCTGCTCCTTCCTCTT
ACGGGCACCACCACCAATTCCTTCTTCAGCAGCAGCAACAGCAGCAGCAG
CAGCAGCAACAGGCTGCCTACCCCCCTCCCTACCAGGCCATGCTGGCCAC
TGCAGGAGGCGGAGAGGGAGGGAGGGTGGAGCCGAAAAAGCGGAAGAGCA
AGAGAGCGCCCCCGGGAGGGCCTTACTTCGACGAAGAGGGAATGACCACA
GGCAAGGGAAAGAAGCGCAACCCGGTAGCCTGCGAGGCTTGTGGGCAAAT
CTTCTCCAACAAAGGGAACCTCATCCGACACCGGCAGCAGTCGTGCCGTG
TACTGGTCAAGTCCCGTCCCGCAGGCAGCGGCGGCAGCAGCAGCAGCAGC
AACAGCAACAGCACCACCACCACCACCAGCAGTAGCAGTAGCAGCAGCAG
CTCTCAAGGCAGCAACGGCAGCGGCATGGGGGGGACTTCGAGCCTTCCTC
CCTCCTCCTCCTACCTCATGCCGTCTCAGCAGCAGCTCCTTCAGCAACAA
CAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCACCAGGTATACATGAT
GCAGCATCAGGGAGGCGTCAATCTATAGATGCATCCCCCCTCCTACTCCC
CCTCCCTCCCCCCCACCCACGGCCCTCCCTCCCTTCCACACGGACTCAAA
TACGTCCCTCCCGCGCACGCGTCAGCGGCAGCTTTCGGGACTCCCTCCCT
CCCTCCCTCTCTCCCTCCCCCTCCTTCTTCCTACTTCTACCCCGCGCAGG
TCGATAACGGCTACAGCCACGCCCCTGCTCCTTCCTCTTACGGGCACCAC
CACCAATTCCTTCTTCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACA
GGCTGCCTACCCCCCTCCCTACCAGGCCATGCTGGCCACTGCAGGAGGCG
GAGAGGGAGGGAGGGTGGAGCCGAAAAAGCGGAAGAGCAAGAGAGCGCCC
CCGGGAGGGCCTTACTTCGACGAAGAGGGAATGACCACAGGCAAGGGAAA
GAAGCGCAACCCGGTAGCCTGCGAGGCTTGTGGGCAAATCTTCTCCAACA
AAGGGAACCTCATCCGACACCGGCAGCAGTCGTGCCGTGTACTGGTCAAG
TCCCGTCCCGCAGGCAGCGGCGGCAGCAGCAGCAGCAGCAACAGCAACAG
CACCACCACCACCACCAGCAGTAGCAGTAGCAGCAGCAGCTCTCAAGGCA
GCAACGGCAGCGGCATGGGGGGGACTTCGAGCCTTCCTCCCTCCTCCTCC
TACCTCATGCCGTCTCAGCAGCAGCTCCTTCAGCAACAACAGCAGCAGCA
GCAACAGCAGCAGCAGCAACAGCACCAGGTATACATGATGCAGCATCAGG
GAGGCGTCAATCTATAG

Synonyms

Publications