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Properties
Property Name | Value |
TranscriptId | 542893 |
Track | FilteredModels2 |
ProteinId | 542807 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_12 | supercontig | scaffold_12:854756..856906 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5253 ID=mRNA_5253|Name=jgi.p|Nanoce1779_2|542807|organism=Nannochloropsis oceanica|type=mRNA|length=1754bp AGGCACTACCACGCGAGTACCCCACCGAGCATCATGCCCCCAGCATCTTC CCCAATCTCTTCCCCAACATCCTCTGCCGTGCCCGCTCTCCCTGTCCTGA GCGCCGAGACGAAGGCCACCATCAAGTCCACGGCTCCCCTCCTCGCCTCG CATGGCCCCACCATCACTCAAGCATTCTACCCCCTTCTCTTCTCCCGATA CCCGTCCGTCAAGCAGCTCTTCAATAAGAGGAATCAAGCACCCGAGGCTG ACGGGAGCCCTCCTCGCCAGCCGCAGGCCTTGGCCAATGCAGTCTGGGCG TATGCCGCCAATATCGACAATCTGGGGGCTCTGTCCGCGGCCATCTCGCT CATAGCACACAAGCACGCCTCTCTACACGTGCTCCCGGAGCACTACCCCA TGGTAGGGGAGTGTCTACTGGCGGCCATCGAGCAGGTGCTGGGCAAAGAG GTCGCGACGGAGGGCGTGCTCTCAGCGTGGGGCCAGGCATATGGGTTTTT GGCCGCTGTCTTCATCCAGACGGAGGACGGTCTGAGGGCGAAAAATGCAA GGAAGAGGCATGGGTGGGTGGGGTGGAGGGAGATGAAGGTCGCGAGGAAG GTGAAGGAGACGGTGGATGTGACGTCGTTTTACTTCACGAATTTGGATGA GACCGAACCAGTGTGCTCCTTCATGCCGGGGCAGTACATCTCCTTGAAAC TGACCATGCCAAATGGGGAGGTGGAGGAGCGTGACTATAGCTTAAAGGGG AACGACATGTCCCCTCCTTACTTCCGCATCAGCATTAAACGCCTGCCGGG AGGGGCCGTCTCCACCTACATGCACGACACGGTTAAGGAAGGCGATGTGC TTCTCGTCGGTCCCCCCTATGGTGACTTCACCCTCCCTCCCGCCCTCCCT CCCTCGAACTCCACCCCCACCCGCCGCCCCCTCGTCTTCCTATCTGCGGG CATCGGGATCACCCCCCTCCTGTGTATGGCTGAAGCTGCCCTTCTGGGCT GTGCCGCCGCTTGCAAAGGCGGTCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCAAGGTTTTCTTCATCCACACTGCGCGGGACAAGGATCATTTCCCTTT TGCCGCCCGCCTGCAGACACTCGGAGGGAAGGAGGGAGGGAAGGACGCGG GGTGTATGTGGGGGTCGGGGAGGCTGACAGCCGCGACCTTGCATGAGGCT TTAGGAACGACGGCCAGGCCGCAGGATTGCACTTTTTATTTTTGTGGACC GACTGAGTATATGGTAGGAGTGAGGCGGCTGTTGGCGTGGCTGGGGGTAC CGGCGGAGGAGGTGCAGTACGAGTGTTTTGGTCCGGCTGTGACAGAGATC GAGGCGGCGGGGGTGGTGCCGTCTTGTTATTAGGATGAATGAGATGGATA GGGAGAATGAGAGGTAAGGGTGTGGTACGCGCGCGCGCGAGAGAGAGAGA GGGAGAGATTGAAGAGAGAGGGAGCTTGGAGAGAGAGATTTGAGATCGAG GAGAGAGTGAAAGCTTGAAGAGAGAGAGAGTGTGTGTGAGGAAGAGAAGA GAATAGACAAGAGAGAAGTGAATCGATTATGTTGAGGCTGAGAGGGAATG GATGAAGGCGAGAGAGCAGGAGGGGTTGAGTGGTCACAAGCAGAGAGCTA CACACACTCGAGACGAGAAAACGAGACGAGAGGGATCCAAAGAGAGAGCG AGGAAGAACCAACCTGAGCCAGCATCGGAAAATAAAGCTTTTCGGAGAGT ACTA back to topprotein sequence of jgi.p|Nanoce1779_2|542807 >mRNA_5253-protein ID=mRNA_5253-protein|Name=jgi.p|Nanoce1779_2|542807|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp MPPASSPISSPTSSAVPALPVLSAETKATIKSTAPLLASHGPTITQAFYP LLFSRYPSVKQLFNKRNQAPEADGSPPRQPQALANAVWAYAANIDNLGAL SAAISLIAHKHASLHVLPEHYPMVGECLLAAIEQVLGKEVATEGVLSAWG QAYGFLAAVFIQTEDGLRAKNARKRHGWVGWREMKVARKVKETVDVTSFY FTNLDETEPVCSFMPGQYISLKLTMPNGEVEERDYSLKGNDMSPPYFRIS IKRLPGGAVSTYMHDTVKEGDVLLVGPPYGDFTLPPALPPSNSTPTRRPL VFLSAGIGITPLLCMAEAALLGCAAACKGGPPSLPPSLPPKVFFIHTARD KDHFPFAARLQTLGGKEGGKDAGCMWGSGRLTAATLHEALGTTARPQDCT FYFCGPTEYMVGVRRLLAWLGVPAEEVQYECFGPAVTEIEAAGVVPSCY* back to topmRNA from alignment at scaffold_12:854756..856906- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5253 ID=mRNA_5253|Name=jgi.p|Nanoce1779_2|542807|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at scaffold_12:854756..856906- (Nannochloropsis oceanica) AGGCACTACCACGCGAGTACCCCACCGAGCATCATGCCCCCAGCATCTTC
CCCAATCTCTTCCCCAACATCCTCTGCCGTGCCCGCTCTCCCTGTCCTGA
GCGCCGAGACGAAGGCCACCATCAAGTCCACGGCTCCCCTCCTCGCCTCG
CATGGCCCCACCATCACTCAAGCATTCTACCCCCTTCTCTTCTCCCGATA
CCCGTCCGTCAAGCAGCTCTTCAATAAGAGGAATCAAGCACCCGAGGCTG
ACGGGAGCCCTCCTCGCCAGCCGCAGGCCTTGGCCAATGCAGTCTGGTAC
GTCGCCCTTTCCGTCCCCTTCCTCCCTCCTTCTCTCCTTCCCTCCATTCT
TCTCTATCTACCTCCCTTAAGCCAGGAGCATCTTCGCCTCGTTTTATTCA
TTACTCTCTCTTTTCCTGTTACCTTATAAGTTCATCCCCCCCCCTCCCCC
CTCCTTTTCAATCTTGCTGCTGAACCACACCACCAATTGACCCTCCCCAC
GCTTTCCCTCCCTCCCTCCCTCTTTCCCTAGGGCGTATGCCGCCAATATC
GACAATCTGGGGGCTCTGTCCGCGGCCATCTCGCTCATAGCACACAAGCA
CGCCTCTCTACACGTGCTCCCGGAGCACTACCCCATGGTAGGGGAGTGTC
TACTGGCGGCCATCGAGCAGGTGCTGGGCAAAGAGGTCGCGACGGAGGGC
GTGCTCTCAGCGTGGGGCCAGGCATATGGGTTTTTGGCCGCTGTCTTCAT
CCAGACGGAGGACGGTCTGAGGGCGAAAAATGCAAGGAAGAGGCATGGGT
GGGTGGGGTGGAGGGAGATGAAGGTCGCGAGGAAGGTGAAGGAGACGGTG
GATGTGACGTCGTTTTACTTCACGAATTTGGATGAGACCGAACCAGTGTG
CTCCTTCATGCCGGGGCAGTACATCTCCTTGAAACTGACCATGCCAAATG
GGGAGGTGGAGGAGCGTGACTATAGCTTAAGTGAATTCTCCATGTCGTCT
GTTGCGGCTGCTGGCGCTGCGCTGCGGGAGGGGGAGAAGGAGGCAAAAGG
CGAGGCAGGGATCGAAGAGGGGAACGACATGTCCCCTCCTTACTTCCGCA
TCAGCATTAAACGCCTGCCGGGAGGGGCCGTCTCCACCTACATGCACGAC
ACGGTTAAGGAAGGCGATGTGCTTCTCGTCGGTCCCCCCTATGGTGACTT
CACCCTCCCTCCCGCCCTCCCTCCCTCGAACTCCACCCCCACCCGCCGCC
CCCTCGTCTTCCTATCTGCGGGCATCGGGATCACCCCCCTCCTGTGTATG
GCTGAAGCTGCCCTTCTGGGCTGTGCCGCCGCTTGCAAAGGCGGTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCAAGGTTTTCTTCATCCACACTGCGC
GGGACAAGGATCATTTCCCTTTTGCCGCCCGCCTGCAGACACTCGTCTCC
TCCTTCCCCTCCCGCTTCATAAGCCACGTGTCATTCACACAAGCACTGAC
CGCGGCCGGGTGGGAGGAGGGAGGGAAGGAGGGAGGGAAGGACGCGGGGT
GTATGTGGGGGTCGGGGAGGCTGACAGCCGCGACCTTGCATGAGGCTTTA
GGAACGACGGCCAGGCCGCAGGATTGCACTTTTTATTTTTGTGGACCGAC
TGAGTATATGGTAGGAGTGAGGCGGCTGTTGGCGTGGCTGGGGGTACCGG
CGGAGGAGGTGCAGTACGAGTGTTTTGGTCCGGCTGTGACAGAGATCGAG
GCGGCGGGGGTGGTGCCGTCTTGTTATTAGGATGAATGAGATGGATAGGG
AGAATGAGAGGTAAGGGTGTGGTACGCGCGCGCGCGAGAGAGAGAGAGGG
AGAGATTGAAGAGAGAGGGAGCTTGGAGAGAGAGATTTGAGATCGAGGAG
AGAGTGAAAGCTTGAAGAGAGAGAGAGTGTGTGTGAGGAAGAGAAGAGAA
TAGACAAGAGAGAAGTGAATCGATTATGTTGAGGCTGAGAGGGAATGGAT
GAAGGCGAGAGAGCAGGAGGGGTTGAGTGGTCACAAGCAGAGAGCTACAC
ACACTCGAGACGAGAAAACGAGACGAGAGGGATCCAAAGAGAGAGCGAGG
AAGAACCAACCTGAGCCAGCATCGGAAAATAAAGCTTTTCGGAGAGTACT
A back to topCoding sequence (CDS) from alignment at scaffold_12:854756..856906- >mRNA_5253 ID=mRNA_5253|Name=jgi.p|Nanoce1779_2|542807|organism=Nannochloropsis oceanica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_12:854756..856906- (Nannochloropsis oceanica) GGAGGGAAGGAGGGAGGGAAGGACGCGGGGTGTATGTGGGGGTCGGGGAG GCTGACAGCCGCGACCTTGCATGAGGCTTTAGGAACGACGGCCAGGCCGC AGGATTGCACTTTTTATTTTTGTGGACCGACTGAGTATATGGTAGGAGTG AGGCGGCTGTTGGCGTGGCTGGGGGTACCGGCGGAGGAGGTGCAGTACGA GTGTTTTGGTCCGGCTGTGACAGAGATCGAGGCGGCGGGGGTGGTGCCGT CTTGTTATTAGAGGGGAACGACATGTCCCCTCCTTACTTCCGCATCAGCA TTAAACGCCTGCCGGGAGGGGCCGTCTCCACCTACATGCACGACACGGTT AAGGAAGGCGATGTGCTTCTCGTCGGTCCCCCCTATGGTGACTTCACCCT CCCTCCCGCCCTCCCTCCCTCGAACTCCACCCCCACCCGCCGCCCCCTCG TCTTCCTATCTGCGGGCATCGGGATCACCCCCCTCCTGTGTATGGCTGAA GCTGCCCTTCTGGGCTGTGCCGCCGCTTGCAAAGGCGGTCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCAAGGTTTTCTTCATCCACACTGCGCGGGACA AGGATCATTTCCCTTTTGCCGCCCGCCTGCAGACACTCGGCGTATGCCGC CAATATCGACAATCTGGGGGCTCTGTCCGCGGCCATCTCGCTCATAGCAC ACAAGCACGCCTCTCTACACGTGCTCCCGGAGCACTACCCCATGGTAGGG GAGTGTCTACTGGCGGCCATCGAGCAGGTGCTGGGCAAAGAGGTCGCGAC GGAGGGCGTGCTCTCAGCGTGGGGCCAGGCATATGGGTTTTTGGCCGCTG TCTTCATCCAGACGGAGGACGGTCTGAGGGCGAAAAATGCAAGGAAGAGG CATGGGTGGGTGGGGTGGAGGGAGATGAAGGTCGCGAGGAAGGTGAAGGA GACGGTGGATGTGACGTCGTTTTACTTCACGAATTTGGATGAGACCGAAC CAGTGTGCTCCTTCATGCCGGGGCAGTACATCTCCTTGAAACTGACCATG CCAAATGGGGAGGTGGAGGAGCGTGACTATAGCTTAAATGCCCCCAGCAT CTTCCCCAATCTCTTCCCCAACATCCTCTGCCGTGCCCGCTCTCCCTGTC CTGAGCGCCGAGACGAAGGCCACCATCAAGTCCACGGCTCCCCTCCTCGC CTCGCATGGCCCCACCATCACTCAAGCATTCTACCCCCTTCTCTTCTCCC GATACCCGTCCGTCAAGCAGCTCTTCAATAAGAGGAATCAAGCACCCGAG GCTGACGGGAGCCCTCCTCGCCAGCCGCAGGCCTTGGCCAATGCAGTCTG GGAGGGAAGGAGGGAGGGAAGGACGCGGGGTGTATGTGGGGGTCGGGGAG GCTGACAGCCGCGACCTTGCATGAGGCTTTAGGAACGACGGCCAGGCCGC AGGATTGCACTTTTTATTTTTGTGGACCGACTGAGTATATGGTAGGAGTG AGGCGGCTGTTGGCGTGGCTGGGGGTACCGGCGGAGGAGGTGCAGTACGA GTGTTTTGGTCCGGCTGTGACAGAGATCGAGGCGGCGGGGGTGGTGCCGT CTTGTTATTAGAGGGGAACGACATGTCCCCTCCTTACTTCCGCATCAGCA TTAAACGCCTGCCGGGAGGGGCCGTCTCCACCTACATGCACGACACGGTT AAGGAAGGCGATGTGCTTCTCGTCGGTCCCCCCTATGGTGACTTCACCCT CCCTCCCGCCCTCCCTCCCTCGAACTCCACCCCCACCCGCCGCCCCCTCG TCTTCCTATCTGCGGGCATCGGGATCACCCCCCTCCTGTGTATGGCTGAA GCTGCCCTTCTGGGCTGTGCCGCCGCTTGCAAAGGCGGTCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCAAGGTTTTCTTCATCCACACTGCGCGGGACA AGGATCATTTCCCTTTTGCCGCCCGCCTGCAGACACTCGGCGTATGCCGC CAATATCGACAATCTGGGGGCTCTGTCCGCGGCCATCTCGCTCATAGCAC ACAAGCACGCCTCTCTACACGTGCTCCCGGAGCACTACCCCATGGTAGGG GAGTGTCTACTGGCGGCCATCGAGCAGGTGCTGGGCAAAGAGGTCGCGAC GGAGGGCGTGCTCTCAGCGTGGGGCCAGGCATATGGGTTTTTGGCCGCTG TCTTCATCCAGACGGAGGACGGTCTGAGGGCGAAAAATGCAAGGAAGAGG CATGGGTGGGTGGGGTGGAGGGAGATGAAGGTCGCGAGGAAGGTGAAGGA GACGGTGGATGTGACGTCGTTTTACTTCACGAATTTGGATGAGACCGAAC CAGTGTGCTCCTTCATGCCGGGGCAGTACATCTCCTTGAAACTGACCATG CCAAATGGGGAGGTGGAGGAGCGTGACTATAGCTTAAATGCCCCCAGCAT CTTCCCCAATCTCTTCCCCAACATCCTCTGCCGTGCCCGCTCTCCCTGTC CTGAGCGCCGAGACGAAGGCCACCATCAAGTCCACGGCTCCCCTCCTCGC CTCGCATGGCCCCACCATCACTCAAGCATTCTACCCCCTTCTCTTCTCCC GATACCCGTCCGTCAAGCAGCTCTTCAATAAGAGGAATCAAGCACCCGAG GCTGACGGGAGCCCTCCTCGCCAGCCGCAGGCCTTGGCCAATGCAGTCTG GGAGGGAAGGAGGGAGGGAAGGACGCGGGGTGTATGTGGGGGTCGGGGAG GCTGACAGCCGCGACCTTGCATGAGGCTTTAGGAACGACGGCCAGGCCGC AGGATTGCACTTTTTATTTTTGTGGACCGACTGAGTATATGGTAGGAGTG AGGCGGCTGTTGGCGTGGCTGGGGGTACCGGCGGAGGAGGTGCAGTACGA GTGTTTTGGTCCGGCTGTGACAGAGATCGAGGCGGCGGGGGTGGTGCCGT CTTGTTATTAGAGGGGAACGACATGTCCCCTCCTTACTTCCGCATCAGCA TTAAACGCCTGCCGGGAGGGGCCGTCTCCACCTACATGCACGACACGGTT AAGGAAGGCGATGTGCTTCTCGTCGGTCCCCCCTATGGTGACTTCACCCT CCCTCCCGCCCTCCCTCCCTCGAACTCCACCCCCACCCGCCGCCCCCTCG TCTTCCTATCTGCGGGCATCGGGATCACCCCCCTCCTGTGTATGGCTGAA GCTGCCCTTCTGGGCTGTGCCGCCGCTTGCAAAGGCGGTCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCAAGGTTTTCTTCATCCACACTGCGCGGGACA AGGATCATTTCCCTTTTGCCGCCCGCCTGCAGACACTCGGCGTATGCCGC CAATATCGACAATCTGGGGGCTCTGTCCGCGGCCATCTCGCTCATAGCAC ACAAGCACGCCTCTCTACACGTGCTCCCGGAGCACTACCCCATGGTAGGG GAGTGTCTACTGGCGGCCATCGAGCAGGTGCTGGGCAAAGAGGTCGCGAC GGAGGGCGTGCTCTCAGCGTGGGGCCAGGCATATGGGTTTTTGGCCGCTG TCTTCATCCAGACGGAGGACGGTCTGAGGGCGAAAAATGCAAGGAAGAGG CATGGGTGGGTGGGGTGGAGGGAGATGAAGGTCGCGAGGAAGGTGAAGGA GACGGTGGATGTGACGTCGTTTTACTTCACGAATTTGGATGAGACCGAAC CAGTGTGCTCCTTCATGCCGGGGCAGTACATCTCCTTGAAACTGACCATG CCAAATGGGGAGGTGGAGGAGCGTGACTATAGCTTAAATGCCCCCAGCAT CTTCCCCAATCTCTTCCCCAACATCCTCTGCCGTGCCCGCTCTCCCTGTC CTGAGCGCCGAGACGAAGGCCACCATCAAGTCCACGGCTCCCCTCCTCGC CTCGCATGGCCCCACCATCACTCAAGCATTCTACCCCCTTCTCTTCTCCC GATACCCGTCCGTCAAGCAGCTCTTCAATAAGAGGAATCAAGCACCCGAG GCTGACGGGAGCCCTCCTCGCCAGCCGCAGGCCTTGGCCAATGCAGTCTG GGAGGGAAGGAGGGAGGGAAGGACGCGGGGTGTATGTGGGGGTCGGGGAG GCTGACAGCCGCGACCTTGCATGAGGCTTTAGGAACGACGGCCAGGCCGC AGGATTGCACTTTTTATTTTTGTGGACCGACTGAGTATATGGTAGGAGTG AGGCGGCTGTTGGCGTGGCTGGGGGTACCGGCGGAGGAGGTGCAGTACGA GTGTTTTGGTCCGGCTGTGACAGAGATCGAGGCGGCGGGGGTGGTGCCGT CTTGTTATTAGAGGGGAACGACATGTCCCCTCCTTACTTCCGCATCAGCA TTAAACGCCTGCCGGGAGGGGCCGTCTCCACCTACATGCACGACACGGTT AAGGAAGGCGATGTGCTTCTCGTCGGTCCCCCCTATGGTGACTTCACCCT CCCTCCCGCCCTCCCTCCCTCGAACTCCACCCCCACCCGCCGCCCCCTCG TCTTCCTATCTGCGGGCATCGGGATCACCCCCCTCCTGTGTATGGCTGAA GCTGCCCTTCTGGGCTGTGCCGCCGCTTGCAAAGGCGGTCCTCCCTCCCT CCCTCCCTCCCTCCCTCCCAAGGTTTTCTTCATCCACACTGCGCGGGACA AGGATCATTTCCCTTTTGCCGCCCGCCTGCAGACACTCGGCGTATGCCGC CAATATCGACAATCTGGGGGCTCTGTCCGCGGCCATCTCGCTCATAGCAC ACAAGCACGCCTCTCTACACGTGCTCCCGGAGCACTACCCCATGGTAGGG GAGTGTCTACTGGCGGCCATCGAGCAGGTGCTGGGCAAAGAGGTCGCGAC GGAGGGCGTGCTCTCAGCGTGGGGCCAGGCATATGGGTTTTTGGCCGCTG TCTTCATCCAGACGGAGGACGGTCTGAGGGCGAAAAATGCAAGGAAGAGG CATGGGTGGGTGGGGTGGAGGGAGATGAAGGTCGCGAGGAAGGTGAAGGA GACGGTGGATGTGACGTCGTTTTACTTCACGAATTTGGATGAGACCGAAC CAGTGTGCTCCTTCATGCCGGGGCAGTACATCTCCTTGAAACTGACCATG CCAAATGGGGAGGTGGAGGAGCGTGACTATAGCTTAAATGCCCCCAGCAT CTTCCCCAATCTCTTCCCCAACATCCTCTGCCGTGCCCGCTCTCCCTGTC CTGAGCGCCGAGACGAAGGCCACCATCAAGTCCACGGCTCCCCTCCTCGC CTCGCATGGCCCCACCATCACTCAAGCATTCTACCCCCTTCTCTTCTCCC GATACCCGTCCGTCAAGCAGCTCTTCAATAAGAGGAATCAAGCACCCGAG GCTGACGGGAGCCCTCCTCGCCAGCCGCAGGCCTTGGCCAATGCAGTCTG back to top
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