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Properties
| Property Name | Value |
|---|
| TranscriptId | 675997 |
| Track | FilteredModels2 |
| ProteinId | 675911 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:13026..15112 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11940 ID=mRNA_11940|Name=jgi.p|Nanoce1779_2|675911|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGC
GATGATGCTACGGCCGGCAGCCATGAGGTCCAATGCCATCTTTTTCTACG
TGACGGCCCTCCGATGCCTGGTATGGATGCGTCCAGGGTGCATCCGGAGG
GAGAGACCGCCGGATCTCCCACACCAACAGCGGCAGCCGGCGGGCACGGG
CTCCTGCACCTGTTACTGTTAGCGCTTTTCCCTTCCCGAGTTGATGAGGC
TGCGCCGGAGTGCGCCGCGGCTGCTGTAGGATTTGCGCCTGCTGCGGCTG
CCAAAGCCGCCGCGACGGGCCCTGTGCTCATGACGCCTTTGGCCTTCACG
GTGCTCGGCAAGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGACGGAG
GCTTTATCACTTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAGGTCA
CTCGGCCTTACGGTCACAGCAATTCCGGCTGTTCACATAGCACTACCACA
CTTAGAACCAGCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCACTGC
TGCCGTCGTCGCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAGACGG
CCCACGCCGGGACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAGGGAG
GATGGTGGAAAAGGCGAGGCCACCTCGTCTGCTACATGCAATCCATCCTT
ATTCGAACATCATGATCGCGTCGACACCAAGCTGCATCGGGCCTATCCTG
AATTCCTGAAGTTCCACCTTATCCACGAGACGCTCCGAGGCAAAGAGAAA
ATTGATGGCTACGAAGTTTACAAAGACAGGCGGGATGATTCAATTGTGGC
GTATGCTCGCCTTGGCAAACTGCTGAGCGGACACCCCGACATAATCCACG
GAGGGTCCATTGCGGCTTTGCTGGACAATACCATGGGAGTTGCCTTTTTC
GCCGCCAAGCGTGGCAATGGTTTTACAGCAAATCTCACCATCAACTACAA
GCGACCCATCACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTAGAGA
AGGTGGAAGGGCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGCTAAG
GATGAGGCTATCCTCTACACTGAAGCCAAATCCCTCTTCATCACGTCTCA
AAGTCCTTTATTGAAGGGCCCAAAGAAAATTGATATTAGCTAGCTATATT
GGTAGGAAGATAAGACAAGAAAATTAAAGTATG back to topprotein sequence of jgi.p|Nanoce1779_2|675911 >mRNA_11940-protein ID=mRNA_11940-protein|Name=jgi.p|Nanoce1779_2|675911|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPGMDASRVHPEGETAGSPTPTAAAGGHGLLHLLLLALFPSRVDEAAPEC
AAAAVGFAPAAAAKAAATGPVLMTPLAFTVLGKLGGTLTFACVRRRLYHL
LRRATLSSHYQVTRPYGHSNSGCSHSTTTLRTSFPVLFAQLAAATAAVVA
AISLPSPSLCETAHAGTEERRGERKAMREDGGKGEATSSATCNPSLFEHH
DRVDTKLHRAYPEFLKFHLIHETLRGKEKIDGYEVYKDRRDDSIVAYARL
GKLLSGHPDIIHGGSIAALLDNTMGVAFFAAKRGNGFTANLTINYKRPIT
CGTEVKVLARVEKVEGRKVFLRAEIRDAKDEAILYTEAKSLFITSQSPLL
KGPKKIDIS* back to topmRNA from alignment at scaffold_171:13026..15112- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11940 ID=mRNA_11940|Name=jgi.p|Nanoce1779_2|675911|organism=Nannochloropsis oceanica|type=mRNA|length=2087bp|location=Sequence derived from alignment at scaffold_171:13026..15112- (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGC
GATGATGCTACGGCCGGCAGCCATGAGGTCCAATGCCATCTTTTTCTACG
TGACGGCCCTCCGATGCCTGGTATGGATGCGTCCAGGGTGCATCCGGAGG
GAGAGACCGCCGGATCTCCCACACCAACAGCGGCAGCCGGCGGGCACGGG
CTCCTGCACCTGTTACTGTTAGCGCTTTTCCCTTCCCGAGTTGATGAGGC
TGCGCCGGAGTGCGCCGCGGCTGCTGTAGGATTTGCGCCTGCTGCGGCTG
CCAAAGCCGCCGCGACGGGTGGAGGGCCAAGGGAGGACGCGCTGGAGTTG
GTGCGCTTCATCCTCGTTACTATTTGCCGCGGCTTTCCGTGCTGCACTAG
GTGGAAGCGGAGACAGTAAAACAAGGACAAATGTCAGCGGTCAGTCTGTG
TACCGTCGCTACCGCGCTGCAATGTGGTGCCAGCGTGCCGCACGTCTGTG
GTTAGGTTGCGTGTGTGTAGGTCGAGCACGTTGTGTGAGTCTTGCATCCC
ATCTCATTTCTTCTATGCATGCGTTCGGTGCGTATCGTGATGATGCGGGC
TCGCAATCCATTTTTCAAGCATTGAGTACATACGAGTCCCAATGTTTTAT
ACACAACCACAGGCCCTGTGCTCATGACGCCTTTGGCCTTCACGGTGCTC
GGCAAGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGACGGAGGCTTTA
TCACTTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAGGTCACTCGGC
CTTACGGTCACAGCAATTCCGGCTGTTCACATAGCACTACCACACTTAGA
ACCAGCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCACTGCTGCCGT
CGTCGCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAGACGGCCCACG
CCGGGACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAGGGAGGATGGT
GGAAAAGGCGAGGCCACCTCGTCTGCTACATGCAATCCATCCTTATTCGA
ACATCATGATCGCGTCGACACCAAGCTGCATCGGGCCTATCCTGAATTCC
TGAAGGTTGGTTATTGGCGGGATGGATGTTAATGAAGTGCTCGCCCCTCC
TCCTTTCGTTTCTCCGTTATATGGACTCTGCTCCTTTGGTTAAGCTGGGC
AAGATACGTGCATGGCACGTCATATCTTCGTATTCTCATGCTTCTCAGTG
TTTGACGCTATCATAGCCACTTTTGAAAGAGCATCTTCCCTCCTCCCTTC
TCCCTCCTCATCTTTTGCATCCTCCTACCACTTTCTTCCCCCACCACCCA
GTTCCACCTTATCCACGAGACGCTCCGAGGCAAAGAGAAAATTGATGGCT
ACGAAGTTTACAAAGACAGGCGGGATGATTCAATTGTGGCGTATGCTCGC
CTTGGCAAACTGCTGAGCGGACACCCCGACATAATCCACGGAGGGTCCAT
TGCGGCTTTGCTGGACAATACCATGGGAGTTGCCTTTTTCGCCGCCAAGG
TGAGTGATAATCATTGACAAGGGAGAAAGAGAAGAAGATTTGAACGAAGA
GCTGGGATGCCGTTTACAAAACGGATGCTTTGGATGCGTGAACAAAGTGT
TTGCTTTATTGGACGTGAGAAGTGAGTGCAGCTAGTCGTCTTTTCACCTC
TACCCTCTACGTCTTCGGCTTGCGACCCTCCATCTGCTACTCAAATAACA
GATAATTCGAAGCCTAAGTGCACGTTCTCATATTTTCTATTCATCTTCAC
GATTCATACATAGCGTGGCAATGGTTTTACAGCAAATCTCACCATCAACT
ACAAGCGACCCATCACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTA
GAGAAGGTGGAAGGGCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGC
TAAGGATGAGGCTATCCTCTACACTGAAGCCAAATCCCTCTTCATCACGT
CTCAAAGTCCTTTATTGAAGGGCCCAAAGAAAATTGATATTAGCTAGCTA
TATTGGTAGGAAGATAAGACAAGAAAATTAAAGTATG back to topCoding sequence (CDS) from alignment at scaffold_171:13026..15112- >mRNA_11940 ID=mRNA_11940|Name=jgi.p|Nanoce1779_2|675911|organism=Nannochloropsis oceanica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_171:13026..15112- (Nannochloropsis oceanica)
CGTGGCAATGGTTTTACAGCAAATCTCACCATCAACTACAAGCGACCCAT
CACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTAGAGAAGGTGGAAG
GGCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGCTAAGGATGAGGCT
ATCCTCTACACTGAAGCCAAATCCCTCTTCATCACGTCTCAAAGTCCTTT
ATTGAAGGGCCCAAAGAAAATTGATATTAGCTAGTTCCACCTTATCCACG
AGACGCTCCGAGGCAAAGAGAAAATTGATGGCTACGAAGTTTACAAAGAC
AGGCGGGATGATTCAATTGTGGCGTATGCTCGCCTTGGCAAACTGCTGAG
CGGACACCCCGACATAATCCACGGAGGGTCCATTGCGGCTTTGCTGGACA
ATACCATGGGAGTTGCCTTTTTCGCCGCCAAGGCCCTGTGCTCATGACGC
CTTTGGCCTTCACGGTGCTCGGCAAGCTTGGTGGCACGTTGACTTTTGCT
TGTGTACGACGGAGGCTTTATCACTTGTTACGGCGGGCAACTTTGTCCTC
CCATTATCAGGTCACTCGGCCTTACGGTCACAGCAATTCCGGCTGTTCAC
ATAGCACTACCACACTTAGAACCAGCTTCCCAGTCCTCTTTGCGCAATTG
GCAGCAGCCACTGCTGCCGTCGTCGCTGCCATTTCCCTGCCGTCGCCTAG
TCTATGCGAGACGGCCCACGCCGGGACTGAGGAGAGACGAGGTGAGAGGA
AGGCAATGAGGGAGGATGGTGGAAAAGGCGAGGCCACCTCGTCTGCTACA
TGCAATCCATCCTTATTCGAACATCATGATCGCGTCGACACCAAGCTGCA
TCGGGCCTATCCTGAATTCCTGAAGATGCCTGGTATGGATGCGTCCAGGG
TGCATCCGGAGGGAGAGACCGCCGGATCTCCCACACCAACAGCGGCAGCC
GGCGGGCACGGGCTCCTGCACCTGTTACTGTTAGCGCTTTTCCCTTCCCG
AGTTGATGAGGCTGCGCCGGAGTGCGCCGCGGCTGCTGTAGGATTTGCGC
CTGCTGCGGCTGCCAAAGCCGCCGCGACGGCGTGGCAATGGTTTTACAGC
AAATCTCACCATCAACTACAAGCGACCCATCACGTGTGGCACCGAAGTCA
AAGTTTTAGCTCGAGTAGAGAAGGTGGAAGGGCGCAAGGTCTTCTTGCGG
GCCGAGATTCGAGACGCTAAGGATGAGGCTATCCTCTACACTGAAGCCAA
ATCCCTCTTCATCACGTCTCAAAGTCCTTTATTGAAGGGCCCAAAGAAAA
TTGATATTAGCTAGTTCCACCTTATCCACGAGACGCTCCGAGGCAAAGAG
AAAATTGATGGCTACGAAGTTTACAAAGACAGGCGGGATGATTCAATTGT
GGCGTATGCTCGCCTTGGCAAACTGCTGAGCGGACACCCCGACATAATCC
ACGGAGGGTCCATTGCGGCTTTGCTGGACAATACCATGGGAGTTGCCTTT
TTCGCCGCCAAGGCCCTGTGCTCATGACGCCTTTGGCCTTCACGGTGCTC
GGCAAGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGACGGAGGCTTTA
TCACTTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAGGTCACTCGGC
CTTACGGTCACAGCAATTCCGGCTGTTCACATAGCACTACCACACTTAGA
ACCAGCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCACTGCTGCCGT
CGTCGCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAGACGGCCCACG
CCGGGACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAGGGAGGATGGT
GGAAAAGGCGAGGCCACCTCGTCTGCTACATGCAATCCATCCTTATTCGA
ACATCATGATCGCGTCGACACCAAGCTGCATCGGGCCTATCCTGAATTCC
TGAAGATGCCTGGTATGGATGCGTCCAGGGTGCATCCGGAGGGAGAGACC
GCCGGATCTCCCACACCAACAGCGGCAGCCGGCGGGCACGGGCTCCTGCA
CCTGTTACTGTTAGCGCTTTTCCCTTCCCGAGTTGATGAGGCTGCGCCGG
AGTGCGCCGCGGCTGCTGTAGGATTTGCGCCTGCTGCGGCTGCCAAAGCC
GCCGCGACGGCGTGGCAATGGTTTTACAGCAAATCTCACCATCAACTACA
AGCGACCCATCACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTAGAG
AAGGTGGAAGGGCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGCTAA
GGATGAGGCTATCCTCTACACTGAAGCCAAATCCCTCTTCATCACGTCTC
AAAGTCCTTTATTGAAGGGCCCAAAGAAAATTGATATTAGCTAGTTCCAC
CTTATCCACGAGACGCTCCGAGGCAAAGAGAAAATTGATGGCTACGAAGT
TTACAAAGACAGGCGGGATGATTCAATTGTGGCGTATGCTCGCCTTGGCA
AACTGCTGAGCGGACACCCCGACATAATCCACGGAGGGTCCATTGCGGCT
TTGCTGGACAATACCATGGGAGTTGCCTTTTTCGCCGCCAAGGCCCTGTG
CTCATGACGCCTTTGGCCTTCACGGTGCTCGGCAAGCTTGGTGGCACGTT
GACTTTTGCTTGTGTACGACGGAGGCTTTATCACTTGTTACGGCGGGCAA
CTTTGTCCTCCCATTATCAGGTCACTCGGCCTTACGGTCACAGCAATTCC
GGCTGTTCACATAGCACTACCACACTTAGAACCAGCTTCCCAGTCCTCTT
TGCGCAATTGGCAGCAGCCACTGCTGCCGTCGTCGCTGCCATTTCCCTGC
CGTCGCCTAGTCTATGCGAGACGGCCCACGCCGGGACTGAGGAGAGACGA
GGTGAGAGGAAGGCAATGAGGGAGGATGGTGGAAAAGGCGAGGCCACCTC
GTCTGCTACATGCAATCCATCCTTATTCGAACATCATGATCGCGTCGACA
CCAAGCTGCATCGGGCCTATCCTGAATTCCTGAAGATGCCTGGTATGGAT
GCGTCCAGGGTGCATCCGGAGGGAGAGACCGCCGGATCTCCCACACCAAC
AGCGGCAGCCGGCGGGCACGGGCTCCTGCACCTGTTACTGTTAGCGCTTT
TCCCTTCCCGAGTTGATGAGGCTGCGCCGGAGTGCGCCGCGGCTGCTGTA
GGATTTGCGCCTGCTGCGGCTGCCAAAGCCGCCGCGACGGCGTGGCAATG
GTTTTACAGCAAATCTCACCATCAACTACAAGCGACCCATCACGTGTGGC
ACCGAAGTCAAAGTTTTAGCTCGAGTAGAGAAGGTGGAAGGGCGCAAGGT
CTTCTTGCGGGCCGAGATTCGAGACGCTAAGGATGAGGCTATCCTCTACA
CTGAAGCCAAATCCCTCTTCATCACGTCTCAAAGTCCTTTATTGAAGGGC
CCAAAGAAAATTGATATTAGCTAGTTCCACCTTATCCACGAGACGCTCCG
AGGCAAAGAGAAAATTGATGGCTACGAAGTTTACAAAGACAGGCGGGATG
ATTCAATTGTGGCGTATGCTCGCCTTGGCAAACTGCTGAGCGGACACCCC
GACATAATCCACGGAGGGTCCATTGCGGCTTTGCTGGACAATACCATGGG
AGTTGCCTTTTTCGCCGCCAAGGCCCTGTGCTCATGACGCCTTTGGCCTT
CACGGTGCTCGGCAAGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGAC
GGAGGCTTTATCACTTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAG
GTCACTCGGCCTTACGGTCACAGCAATTCCGGCTGTTCACATAGCACTAC
CACACTTAGAACCAGCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCA
CTGCTGCCGTCGTCGCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAG
ACGGCCCACGCCGGGACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAG
GGAGGATGGTGGAAAAGGCGAGGCCACCTCGTCTGCTACATGCAATCCAT
CCTTATTCGAACATCATGATCGCGTCGACACCAAGCTGCATCGGGCCTAT
CCTGAATTCCTGAAGATGCCTGGTATGGATGCGTCCAGGGTGCATCCGGA
GGGAGAGACCGCCGGATCTCCCACACCAACAGCGGCAGCCGGCGGGCACG
GGCTCCTGCACCTGTTACTGTTAGCGCTTTTCCCTTCCCGAGTTGATGAG
GCTGCGCCGGAGTGCGCCGCGGCTGCTGTAGGATTTGCGCCTGCTGCGGC
TGCCAAAGCCGCCGCGACGG back to top
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